Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001788

Physical Location & Seq

Genomic Coordinates Forward (+)

72166051 .. 72166847

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAATTTGATCTAAATGATGAGGTATCACGTACCATTATAGTGGATATGAAGGGTCGAGGAGATTTTAGAACAGTTCAAGAAGCCATTGATTCCATACCCTCAAATAACTCTTGGTGGATTCGAATCCAACTTAACAAAGGTCTCTACTTTGAAAAAGTGCTGATTCCTGAAGACAAACCATACATTATTCTTGAAGGTCAACCTAAATATCTCACTGCAATAGAATTTGGAGACCTTGGCAGTGTTGCAAAGAGTCCTACATTTACGTTACTTGCAGATAATTTCGTAGCTCGGAATATACTATTCAAGGTTAAAGGATCTAGTGTAGATCCTGAACTTGCCATTAATTCATATGACCATCTTATCGAAGTGGATCCTAATAACCGGAGAACTACTTGGGCAGTTGCGGCTAAAATTGTTGGAGACAAAGCAAGTTTTTATCATTGTGGTTTCATTAGCTTGCAAGATACAGTGTGGGATGCCAAAGGTCGTCACTATTTCTATGATTGCGATGTTCGTGGTGCTATAGACTTTATTTGGGGCAATGGCCAGTCAATTTATGAGGTTAAGTTTTGTTGCCATATTCCATCAATAAACCTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

202

Amino Acids

22.96

Weight (kDa)

5.57

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	13 - 105	2.1e-11	Pectinesterase
Pectinesterase	PF01095	134 - 189	5.2e-12	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19150 AT2G19150 AT2G47280 AT5G26810
fragaria_vesca	FvH4_1g18321 FvH4_1g18330 FvH4_6g07550 FvH4_6g15430
malus_domestica	MD02G1190500.v1.1 MD12G1205100.v1.1
prunus_persica	Prupe.6G215500_v2.0.a1 Prupe.6G215600_v2.0.a1 Prupe.6G215800_v2.0.a1 Prupe.6G312200_v2.0.a1
pyrus_communis	pycom12g19280
rosa_chinensis	RchiOBHm_Chr2g0109001 RchiOBHm_Chr2g0109011 RchiOBHm_Chr3g0457241
rosa_laevigata	RLG00000017700 RLG00000017701 RLG00000025240 RLG00000025241
rosa_multiflora	Rmu_sc0028579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134630 Rroxscaffold_2G00134660 Rroxscaffold_6G00422080 Rroxscaffold_6G00422090
rosa_rugosa	Rorug02G0156700 Rorug02G0156800 Rorug02G0156900 Rorug02G0156900 Rorug03G0019600
rosa_samantha	Rh2AG207500 Rh2AG207600 Rh2BG218800 Rh2BG218900 Rh2CG210700 Rh2CG210800 Rh2DG213800 Rh2DG213900 Rh3AG079400 Rh3BG081100 Rh3CG081400 Rh3DG083100
rosa_wichuraiana	Rw0G010980 Rw2G016480 Rw3G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	4 cut(s)	326, 328, 371, 384
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	2 cut(s)	5, 227
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	80, 155, 197, 310
AluBI	AGCT	2 cut(s)	293, 462
AluI	AGCT	2 cut(s)	293, 462
Alw26I	GTCTC	3 cut(s)	149, 228, 420
AlwI	GGATC	4 cut(s)	326, 328, 371, 384
AoxI	GGCC	1 cut(s)	550
ApoI	RAATTY	2 cut(s)	5, 227
AseI	ATTAAT	1 cut(s)	348
AsuII	TTCGAA	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	180
BccI	CCATC	2 cut(s)	369, 598
BcoDI	GTCTC	3 cut(s)	149, 228, 420
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	378
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	125
BsaI	GGTCTC	2 cut(s)	149, 228
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	553
Bse8I	GATNNNNATC	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	553
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	388
BsmAI	GTCTC	3 cut(s)	149, 228, 420
BsnI	GGCC	1 cut(s)	552
Bso31I	GGTCTC	2 cut(s)	149, 228
Bsp119I	TTCGAA	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	10, 320, 331, 376
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	4 cut(s)	326, 328, 371, 384
BspT104I	TTCGAA	1 cut(s)	124
BspTNI	GGTCTC	2 cut(s)	149, 228
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	4 cut(s)	10, 320, 331, 376
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	76, 475
BstBAI	YACGTR	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	4 cut(s)	13, 323, 334, 379
BstMAI	GTCTC	3 cut(s)	149, 228, 420
BstMBI	GATC	4 cut(s)	10, 320, 331, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	528
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	3 cut(s)	320, 331, 376
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	3 cut(s)	320, 331, 376
BsuRI	GGCC	1 cut(s)	552
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	2 cut(s)	216, 250
BtsIMutI	CAGTG	3 cut(s)	216, 250, 480
Cac8I	GCNNGC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	33
CviJI	RGCY	5 cut(s)	86, 293, 413, 462, 552
CviKI_1	RGCY	5 cut(s)	86, 293, 413, 462, 552
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	4 cut(s)	12, 322, 333, 378
DpnII	GATC	4 cut(s)	10, 320, 331, 376
EaeI	YGGCCR	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	238
Eco31I	GGTCTC	2 cut(s)	149, 228
Eco57I	CTGAAG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	5 cut(s)	92, 121, 126, 166, 256
HpaII	CCGG	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	4 cut(s)	80, 170, 194, 335
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	46, 191
HpyCH4III	ACNGT	2 cut(s)	76, 475
HpyCH4IV	ACGT	2 cut(s)	31, 269
HpyCH4V	TGCA	4 cut(s)	221, 251, 278, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	2 cut(s)	31, 269
Kzo9I	GATC	4 cut(s)	10, 320, 331, 376
LpnPI	CCDG	4 cut(s)	183, 348, 401, 566
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	31, 269
MaeIII	GTNAC	2 cut(s)	270, 494
MalI	GATC	4 cut(s)	12, 322, 333, 378
MboI	GATC	4 cut(s)	10, 320, 331, 376
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	3 cut(s)	320, 331, 376
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	6 cut(s)	5, 227, 283, 349, 417, 558
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	2 cut(s)	154, 403
MnlI	CCTC	4 cut(s)	16, 53, 112, 559
Mox20I	TGGCCA	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	4 cut(s)	135, 315, 348, 570
MslI	CAYNNNNRTG	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	552
MspI	CCGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	4 cut(s)	10, 320, 331, 376
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	124
PfeI	GAWTC	4 cut(s)	92, 121, 126, 166
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	378
PsuI	RGATCY	3 cut(s)	320, 331, 376
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	135, 315, 348, 570
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	4 cut(s)	10, 320, 331, 376
SchI	GAGTC	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	528
SfuI	TTCGAA	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	6 cut(s)	5, 227, 283, 349, 417, 558
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	76, 475
TaiI	ACGT	2 cut(s)	34, 272
TaqI	TCGA	3 cut(s)	58, 124, 369
TasI	AATT	6 cut(s)	5, 227, 283, 349, 417, 558
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	4 cut(s)	92, 121, 126, 166
Tru1I	TTAA	4 cut(s)	135, 315, 348, 570
Tru9I	TTAA	4 cut(s)	135, 315, 348, 570
TscAI	CASTG	3 cut(s)	223, 250, 480
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	4 cut(s)	17, 65, 342, 445
TspRI	CASTG	3 cut(s)	223, 250, 480
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	2 cut(s)	5, 227
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.