Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001788

Physical Location & Seq

Genomic Coordinates Forward (+)

22302656 .. 22304206

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGTCGCTTATATCAATAATATTTGCTCTCTTCTTTTTATTGGGTGCATCAGATGCACTTTCAAGAACCATCATAGTCGATAAGAATGGTCAAGGAAAATTTACAACAGTGCAGCAAGCCATTGATTCCATACCAGAAAATAACTCATTGTGGACGCGAATTCTTATTAAGCATGGTGTCTACACGGAAAAAGTTGTGATCCCTAAGGAGAAACCATATATTATTCTTGAAGGAGAGGCTAACCAGCTTACCTCGATTGAATTTGGGGAAGGTGGCAATGTTGTTGAAAGCCCTACATTTAAACTATTTGCAGATAATTTTGTAGCTCGGAATATAATATTCAAGAATACATACAACAATGATCTTATCAAACTTGATGACAATGGGAAAAAAACTACTTGGGCTCCTGCGGCTTTCATTGGTGGAGACAAAGCAAGTTTTCGTAACTGCGGTTTCATTGGCGTGCAAGATACATTGAGTGATGCCATAGGCCGGCACCATTTCTATAATTGCACTATTGTTGGAGCTATAGACTTTATTTTCAGCAATGGACAGTCAATTTATGAGAAATGCCTGATAAAATCAATTTCAGACAGAATAGGCCTACCTGGTTATATTACAGCCCAAGGTCGTAATGACCCAAATGACACTTCTGGTTTTGTATTCAAAGATTGCCATGTATCAAGCACAGGCCATACTTTGCTAGGAAGACCATACAGACCTTATGCAAGAGTATTGTTTGTCTCCACATTTATGGAAAATGTTATTTCCCCAGAGGGCTGGACCTCAGCATGGCATGCTGGTTCTGAGAACAAAATCACATTCTCGGAGGTGAATTGCACAGGGCCTGGCGCAGATGTTTCCCGTCGTGTCTCATGGGCGAAGAAGTTAACAGATGAACAAGTAGTATTTTTTACAAATACAGCTTCTTTCCTAGACCAAGATGGATGGTTGGCAAAACAACCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

325

Amino Acids

35.88

Weight (kDa)

6.09

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19150 AT2G19150 AT2G47280 AT5G26810
fragaria_vesca	FvH4_1g18321 FvH4_1g18330 FvH4_6g07550 FvH4_6g15430
malus_domestica	MD02G1190500.v1.1 MD12G1205100.v1.1
prunus_persica	Prupe.6G215500_v2.0.a1 Prupe.6G215600_v2.0.a1 Prupe.6G215800_v2.0.a1 Prupe.6G312200_v2.0.a1
pyrus_communis	pycom12g19280
rosa_chinensis	RchiOBHm_Chr2g0109001 RchiOBHm_Chr2g0109011 RchiOBHm_Chr3g0457241
rosa_laevigata	RLG00000017700 RLG00000017701 RLG00000025240 RLG00000025241
rosa_multiflora	Rmu_sc0028579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134630 Rroxscaffold_2G00134660 Rroxscaffold_6G00422080 Rroxscaffold_6G00422090
rosa_rugosa	Rorug02G0156700 Rorug02G0156800 Rorug02G0156900 Rorug02G0156900 Rorug03G0019600
rosa_samantha	Rh2AG207500 Rh2AG207600 Rh2BG218800 Rh2BG218900 Rh2CG210700 Rh2CG210800 Rh2DG213800 Rh2DG213900 Rh3AG079400 Rh3BG081100 Rh3CG081400 Rh3DG083100
rosa_wichuraiana	Rw0G010980 Rw2G016480 Rw3G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	413, 453
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	3 cut(s)	101, 162, 263
AfiI	CCNNNNNNNGG	2 cut(s)	495, 795
AgsI	TTSAA	6 cut(s)	66, 233, 263, 290, 346, 670
AjnI	CCWGG	2 cut(s)	610, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
AluBI	AGCT	4 cut(s)	250, 329, 530, 929
AluI	AGCT	4 cut(s)	250, 329, 530, 929
Alw26I	GTCTC	3 cut(s)	423, 751, 880
AlwI	GGATC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	4 cut(s)	493, 604, 694, 848
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	3 cut(s)	101, 162, 263
AspLEI	GCGC	1 cut(s)	857
AspS9I	GGNCC	2 cut(s)	786, 848
AsuHPI	GGTGA	1 cut(s)	847
AvaII	GGWCC	1 cut(s)	786
AxyI	CCTNAGG	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	718
BbvCI	CCTCAGC	1 cut(s)	790
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	3 cut(s)	80, 941, 945
BciT130I	CCWGG	2 cut(s)	612, 852
BcoDI	GTCTC	3 cut(s)	423, 751, 880
BfaI	CTAG	2 cut(s)	707, 938
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	2 cut(s)	116, 414
BlsI	GCNGC	2 cut(s)	117, 415
Bme1390I	CCNGG	2 cut(s)	612, 852
Bme18I	GGWCC	1 cut(s)	786
BmgT120I	GGNCC	2 cut(s)	786, 848
BmiI	GGNNCC	2 cut(s)	408, 500
BmrFI	CCNGG	2 cut(s)	612, 852
BmsI	GCATC	3 cut(s)	46, 59, 475
BpiI	GAAGAC	1 cut(s)	718
Bpu10I	CCTNAGC	1 cut(s)	790
BsaJI	CCNNGG	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 795
Bse118I	RCCGGY	1 cut(s)	495
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	2 cut(s)	286, 556
BseBI	CCWGG	2 cut(s)	612, 852
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	1 cut(s)	956
BseLI	CCNNNNNNNGG	2 cut(s)	495, 795
BseMI	GCAATG	2 cut(s)	286, 556
BseMII	CTCAG	2 cut(s)	801, 804
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	495, 606, 696, 850
BshNI	GGYRCC	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	496
BslI	CCNNNNNNNGG	2 cut(s)	495, 795
BsmAI	GTCTC	3 cut(s)	423, 751, 880
BsnI	GGCC	4 cut(s)	495, 606, 696, 850
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	201, 364
BspACI	CCGC	2 cut(s)	413, 453
BspANI	GGCC	4 cut(s)	495, 606, 696, 850
BspCNI	CTCAG	2 cut(s)	802, 803
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	408, 500
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	286, 556
BsrFI	RCCGGY	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	2 cut(s)	201, 364
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	612, 852
Bst4CI	ACNGT	2 cut(s)	112, 558
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	2 cut(s)	56, 800
BstC8I	GCNNGC	4 cut(s)	120, 467, 497, 801
BstDEI	CTNAG	3 cut(s)	207, 790, 810
BstF5I	GGATG	1 cut(s)	956
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	857
BstKTI	GATC	2 cut(s)	204, 367
BstMAI	GTCTC	3 cut(s)	423, 751, 880
BstMBI	GATC	2 cut(s)	201, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 413, 800
BstNI	CCWGG	2 cut(s)	612, 852
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	610, 850
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	718
BstXI	CCANNNNNNTGG	2 cut(s)	757, 783
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	4 cut(s)	495, 606, 696, 850
BtsCI	GGATG	1 cut(s)	956
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	4 cut(s)	120, 467, 497, 801
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	1 cut(s)	857
Cfr10I	RCCGGY	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	786, 848
CseI	GACGC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	610
CviAII	CATG	5 cut(s)	176, 680, 795, 800, 879
DdeI	CTNAG	3 cut(s)	207, 790, 810
DpnI	GATC	2 cut(s)	203, 366
DpnII	GATC	2 cut(s)	201, 364
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	628
Eco147I	AGGCCT	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	786
Eco81I	CCTNAGG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	610, 850
EcoT14I	CCWWGG	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	5 cut(s)	179, 683, 798, 803, 882
FatI	CATG	5 cut(s)	175, 679, 794, 799, 878
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	116, 414
FokI	GGATG	1 cut(s)	963
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	116, 414
FspBI	CTAG	2 cut(s)	707, 938
GlaI	GCGC	1 cut(s)	856
GluI	GCNGC	2 cut(s)	116, 414
HaeIII	GGCC	4 cut(s)	495, 606, 696, 850
HapII	CCGG	1 cut(s)	496
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	857
Hin1II	CATG	5 cut(s)	179, 683, 798, 803, 882
Hin6I	GCGC	1 cut(s)	855
HinP1I	GCGC	1 cut(s)	855
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HinfI	GANTC	2 cut(s)	5, 128
HpaI	GTTAAC	1 cut(s)	894
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	1 cut(s)	847
Hpy166II	GTNNAC	3 cut(s)	156, 184, 894
Hpy188I	TCNGA	5 cut(s)	55, 333, 595, 811, 832
Hpy188III	TCNNGA	3 cut(s)	66, 230, 346
Hpy8I	GTNNAC	3 cut(s)	156, 184, 894
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	2 cut(s)	227, 266
HpyCH4III	ACNGT	2 cut(s)	112, 558
HpyCH4V	TGCA	8 cut(s)	50, 59, 115, 314, 469, 516, 731, 843
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 413, 800
HpyF3I	CTNAG	3 cut(s)	207, 790, 810
Hsp92II	CATG	5 cut(s)	179, 683, 798, 803, 882
HspAI	GCGC	1 cut(s)	855
KroI	GCCGGC	1 cut(s)	495
KroNI	GCCGGC	1 cut(s)	497
KspAI	GTTAAC	1 cut(s)	894
Kzo9I	GATC	2 cut(s)	201, 364
LmnI	GCTCC	2 cut(s)	412, 527
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	3 cut(s)	46, 59, 475
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	2 cut(s)	707, 938
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	2 cut(s)	203, 366
MboI	GATC	2 cut(s)	201, 364
MboII	GAAGA	3 cut(s)	25, 723, 898
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	9 cut(s)	101, 162, 263, 319, 511, 561, 588, 838, 970
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	5 cut(s)	232, 265, 772, 799, 826
MroNI	GCCGGC	1 cut(s)	495
MseI	TTAA	4 cut(s)	171, 303, 893, 973
MslI	CAYNNNNRTG	2 cut(s)	464, 755
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	2 cut(s)	612, 852
MvaI	CCWGG	2 cut(s)	612, 852
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	56, 413, 800
NaeI	GCCGGC	1 cut(s)	497
NdeII	GATC	2 cut(s)	201, 364
NgoMIV	GCCGGC	1 cut(s)	495
NlaIII	CATG	5 cut(s)	179, 683, 798, 803, 882
NlaIV	GGNNCC	2 cut(s)	408, 500
NspI	RCATGY	1 cut(s)	803
PaeI	GCATGC	1 cut(s)	803
PceI	AGGCCT	1 cut(s)	606
PdiI	GCCGGC	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	117, 415
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	610, 850
PspGI	CCWGG	2 cut(s)	610, 850
PspN4I	GGNNCC	2 cut(s)	408, 500
PspPI	GGNCC	2 cut(s)	786, 848
PstNI	CAGNNNCTG	1 cut(s)	851
RseI	CAYNNNNRTG	2 cut(s)	464, 755
SaqAI	TTAA	4 cut(s)	171, 303, 893, 973
SatI	GCNGC	2 cut(s)	116, 414
Sau3AI	GATC	2 cut(s)	201, 364
Sau96I	GGNCC	2 cut(s)	786, 848
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	612, 852
SduI	GDGCHC	1 cut(s)	409
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	3 cut(s)	46, 59, 475
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	786
SmiMI	CAYNNNNRTG	2 cut(s)	464, 755
SphI	GCATGC	1 cut(s)	803
Sse9I	AATT	9 cut(s)	101, 162, 263, 319, 511, 561, 588, 838, 970
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	2 cut(s)	413, 453
SspI	AATATT	2 cut(s)	24, 342
SspMI	CTAG	2 cut(s)	707, 938
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	610, 850
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	112, 558
TaqI	TCGA	2 cut(s)	81, 257
TasI	AATT	9 cut(s)	101, 162, 263, 319, 511, 561, 588, 838, 970
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	4 cut(s)	171, 303, 893, 973
Tru9I	TTAA	4 cut(s)	171, 303, 893, 973
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	409, 448, 915
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	786
XapI	RAATTY	3 cut(s)	101, 162, 263
XceI	RCATGY	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	2 cut(s)	707, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.