Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001788

Physical Location & Seq

Genomic Coordinates Forward (+)

13970305 .. 13970775

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0156800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAAACGAAGCTTCGAAGATGAGACCTACCTGCACTATGCCGCAGCTCGAGCTCGACCATATATTCCAAGAACCCAATACAAAGAAGAATGTAATGCTCACGAGGAGTATTAGTACTACTCTTGCTTCTTTGTTTTCTCCTCCTAGAAACTATGACTTGCGCAGTACGAGTTGTCGACGCGTTCAACCCATAAGTACAGATCAATTCCTCAGAACTTACACCTTCACCAAGAAAGAGGCAAATCATCGGCAGCTCAAGAGGAGTAATAGTTTCAATTGCTCTAATTTTCCAAACAATGACATGCGCTCTAAAAGTAGGTCTCAATTCCTCAGGAGTTACACCTTCACTACAAAAGACACCAAGAAAGAGACCGTCGCAAGGAAACTAGCCAAGTGGTTTAAGACCAACATGCTCAACATGAACAATAAGAGTTTGAGAACTAAATCCAAGTCTGCAGTGTACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

156

Amino Acids

18.39

Weight (kDa)

10.38

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19150 AT2G19150 AT2G47280 AT5G26810
fragaria_vesca	FvH4_1g18321 FvH4_1g18330 FvH4_6g07550 FvH4_6g15430
malus_domestica	MD02G1190500.v1.1 MD12G1205100.v1.1
prunus_persica	Prupe.6G215500_v2.0.a1 Prupe.6G215600_v2.0.a1 Prupe.6G215800_v2.0.a1 Prupe.6G312200_v2.0.a1
pyrus_communis	pycom12g19280
rosa_chinensis	RchiOBHm_Chr2g0109001 RchiOBHm_Chr2g0109011 RchiOBHm_Chr3g0457241
rosa_laevigata	RLG00000017700 RLG00000017701 RLG00000025240 RLG00000025241
rosa_multiflora	Rmu_sc0028579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134630 Rroxscaffold_2G00134660 Rroxscaffold_6G00422080 Rroxscaffold_6G00422090
rosa_rugosa	Rorug02G0156700 Rorug02G0156800 Rorug02G0156900 Rorug02G0156900 Rorug03G0019600
rosa_samantha	Rh2AG207500 Rh2AG207600 Rh2BG218800 Rh2BG218900 Rh2CG210700 Rh2CG210800 Rh2DG213800 Rh2DG213900 Rh3AG079400 Rh3BG081100 Rh3CG081400 Rh3DG083100
rosa_wichuraiana	Rw0G010980 Rw2G016480 Rw3G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	183
AciI	CCGC	1 cut(s)	44
AfaI	GTAC	4 cut(s)	118, 169, 199, 464
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	188, 277
AluBI	AGCT	4 cut(s)	14, 49, 55, 256
AluI	AGCT	4 cut(s)	14, 49, 55, 256
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	3 cut(s)	19, 327, 365
Ama87I	CYCGRG	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	46, 253
AspLEI	GCGC	2 cut(s)	165, 309
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	58, 265
BcoDI	GTCTC	3 cut(s)	19, 327, 365
BfaI	CTAG	2 cut(s)	147, 389
BfmI	CTRYAG	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	44, 47, 254
BlsI	GCNGC	3 cut(s)	45, 48, 255
BmcAI	AGTACT	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	50
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	242
BsaI	GGTCTC	3 cut(s)	19, 327, 365
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse21I	CCTNAGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	226, 346
BseRI	GAGGAG	3 cut(s)	121, 132, 277
BseXI	GCAGC	2 cut(s)	58, 265
BsgI	GTGCAG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	3 cut(s)	19, 327, 365
Bso31I	GGTCTC	3 cut(s)	19, 327, 365
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	225, 345
BspFNI	CGCG	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	3 cut(s)	19, 327, 365
BssMI	GATC	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	212, 332
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	165, 309
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	3 cut(s)	19, 327, 365
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNSI	RCATGY	2 cut(s)	307, 415
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	58, 265
Bsu36I	CCTNAGG	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	41
CfoI	GCGC	2 cut(s)	165, 309
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	4 cut(s)	117, 168, 198, 463
CviAII	CATG	3 cut(s)	304, 412, 421
CviJI	RGCY	5 cut(s)	14, 49, 55, 256, 392
CviKI_1	RGCY	5 cut(s)	14, 49, 55, 256, 392
CviQI	GTAC	4 cut(s)	117, 168, 198, 463
DdeI	CTNAG	2 cut(s)	212, 332
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	3 cut(s)	19, 327, 365
Eco53kI	GAGCTC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	3 cut(s)	307, 415, 424
FaiI	YATR	8 cut(s)	41, 63, 65, 156, 194, 305, 413, 422
FatI	CATG	3 cut(s)	303, 411, 420
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	44, 47, 254
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	44, 47, 254
FspBI	CTAG	2 cut(s)	147, 389
FspI	TGCGCA	1 cut(s)	164
GlaI	GCGC	2 cut(s)	164, 308
GluI	GCNGC	3 cut(s)	44, 47, 254
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	165, 309
Hin1II	CATG	3 cut(s)	307, 415, 424
Hin6I	GCGC	2 cut(s)	163, 307
HinP1I	GCGC	2 cut(s)	163, 307
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	179, 463
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	3 cut(s)	103, 259, 334
Hpy8I	GTNNAC	2 cut(s)	179, 463
Hpy99I	CGWCG	2 cut(s)	183, 380
HpyAV	CCTTC	2 cut(s)	235, 355
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	36, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	212, 332
Hsp92II	CATG	3 cut(s)	307, 415, 424
HspAI	GCGC	2 cut(s)	163, 307
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	2 cut(s)	46, 319
Lsp1109I	GCAGC	2 cut(s)	58, 265
MaeI	CTAG	2 cut(s)	147, 389
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	31, 100
MfeI	CAATTG	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	4 cut(s)	206, 277, 286, 326
MluI	ACGCGT	1 cut(s)	181
MnlI	CCTC	6 cut(s)	99, 153, 221, 232, 255, 341
MseI	TTAA	2 cut(s)	402, 469
MunI	CAATTG	1 cut(s)	277
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	307, 415, 424
NsbI	TGCGCA	1 cut(s)	164
NspI	RCATGY	2 cut(s)	307, 415
NspV	TTCGAA	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	45, 48, 255
Psp124BI	GAGCTC	1 cut(s)	57
PspXI	VCTCGAGB	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	460
RsaI	GTAC	4 cut(s)	118, 169, 199, 464
RsaNI	GTAC	4 cut(s)	117, 168, 198, 463
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	402, 469
SatI	GCNGC	3 cut(s)	44, 47, 254
Sau3AI	GATC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	9 cut(s)	16, 31, 35, 51, 57, 227, 258, 323, 347
SfcI	CTRYAG	1 cut(s)	456
Sfr274I	CTCGAG	1 cut(s)	50
SfuI	TTCGAA	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	50, 257
SmoI	CTYRAG	2 cut(s)	50, 257
Sse9I	AATT	4 cut(s)	206, 277, 286, 326
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	147, 389
SstI	GAGCTC	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	4 cut(s)	17, 51, 57, 178
TasI	AATT	4 cut(s)	206, 277, 286, 326
TatI	WGTACW	3 cut(s)	116, 197, 462
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	402, 469
Tru9I	TTAA	2 cut(s)	402, 469
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	2 cut(s)	46, 253
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	465
XceI	RCATGY	2 cut(s)	307, 415
XhoI	CTCGAG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	2 cut(s)	147, 389
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.