Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028579.1

Orthogroup ID

OG0001788

Physical Location & Seq

Genomic Coordinates Reverse (-)

81 .. 2548

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028579.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgaagtctcttattcttattatttcagtgatattggctcttttctcttttctgaatggattgaatgcattccgtccactagaccaagtttcaactaccatcgtagttgatcagaatggtaaaggacaatttaccactgttcaacaagccgtcgactctataccaccaaataacccgtggactctaattcacctcaactccggtgtctacaatgaaaaagttgagatcaagaagccatatattattcttgaaggagaccgcgatcagcaaactgtgattcaatatggagatggcggaaatgttgttaccagcgagagaggtctagggttggaaagacagaggctggtgttgaggcctgtccggcggcgctcctgctttgatggcgacttcctgcctcgtcgacgagtggtgctcttggttgtgtatgctttttcatctatctcaagcagcggcgcagacgttggtgaagggtgctcggctatcggcgacgagaaggtgtttagtgaccagatagtggcggcggcaggccatggatcgtatggcactggtcttttctctgaggcgtgtggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

190

Amino Acids

20.62

Weight (kDa)

6.11

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19150 AT2G19150 AT2G47280 AT5G26810
fragaria_vesca	FvH4_1g18321 FvH4_1g18330 FvH4_6g07550 FvH4_6g15430
malus_domestica	MD02G1190500.v1.1 MD12G1205100.v1.1
prunus_persica	Prupe.6G215500_v2.0.a1 Prupe.6G215600_v2.0.a1 Prupe.6G215800_v2.0.a1 Prupe.6G312200_v2.0.a1
pyrus_communis	pycom12g19280
rosa_chinensis	RchiOBHm_Chr2g0109001 RchiOBHm_Chr2g0109011 RchiOBHm_Chr3g0457241
rosa_laevigata	RLG00000017700 RLG00000017701 RLG00000025240 RLG00000025241
rosa_multiflora	Rmu_sc0028579.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134630 Rroxscaffold_2G00134660 Rroxscaffold_6G00422080 Rroxscaffold_6G00422090
rosa_rugosa	Rorug02G0156700 Rorug02G0156800 Rorug02G0156900 Rorug02G0156900 Rorug03G0019600
rosa_samantha	Rh2AG207500 Rh2AG207600 Rh2BG218800 Rh2BG218900 Rh2CG210700 Rh2CG210800 Rh2DG213800 Rh2DG213900 Rh3AG079400 Rh3BG081100 Rh3CG081400 Rh3DG083100
rosa_wichuraiana	Rw0G010980 Rw2G016480 Rw3G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccI	GTMKAC	3 cut(s)	153, 207, 400
AccII	CGCG	1 cut(s)	261
AciI	CCGC	6 cut(s)	259, 294, 364, 450, 518, 521
AclWI	GGATC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	5 cut(s)	64, 93, 143, 251, 281
Alw21I	GWGCWC	2 cut(s)	414, 476
Alw26I	GTCTC	2 cut(s)	12, 249
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	343
AoxI	GGCC	2 cut(s)	353, 526
ApeKI	GCWGC	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	369, 455
AsuHPI	GGTGA	2 cut(s)	182, 476
Bbv12I	GWGCWC	2 cut(s)	414, 476
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	3 cut(s)	107, 284, 374
BceAI	ACGGC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	12, 249
BfaI	CTAG	3 cut(s)	80, 323, 571
BfoI	RGCGCY	1 cut(s)	370
BglI	GCCNNNNNGGC	1 cut(s)	361
BisI	GCNGC	5 cut(s)	365, 448, 451, 519, 522
BlsI	GCNGC	5 cut(s)	366, 449, 452, 520, 523
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpuEI	CTTGAG	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	176, 529
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	550
BseDI	CCNNGG	2 cut(s)	176, 529
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	355, 528
BsiHKAI	GWGCWC	2 cut(s)	414, 476
BsiSI	CCGG	2 cut(s)	201, 361
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	12, 249
BsmI	GAATGC	2 cut(s)	68, 70
BsnI	GGCC	2 cut(s)	355, 528
Bso31I	GGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	414, 476
Bsp143I	GATC	4 cut(s)	109, 225, 262, 533
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	6 cut(s)	259, 294, 364, 450, 518, 521
BspANI	GGCC	2 cut(s)	355, 528
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	261
BspPI	GGATC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	2 cut(s)	176, 529
BssMI	GATC	4 cut(s)	109, 225, 262, 533
BssT1I	CCWWGG	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	139, 274
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	2 cut(s)	176, 529
BstFNI	CGCG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	369, 455
BstKTI	GATC	4 cut(s)	112, 228, 265, 536
BstMAI	GTCTC	2 cut(s)	12, 249
BstMBI	GATC	4 cut(s)	109, 225, 262, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 381
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	355, 528
BtgI	CCRYGG	2 cut(s)	176, 529
BtsIMutI	CAGTG	3 cut(s)	33, 135, 543
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	343
CfoI	GCGC	2 cut(s)	369, 455
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	8 cut(s)	38, 149, 235, 343, 355, 479, 528, 570
CviKI_1	RGCY	8 cut(s)	38, 149, 235, 343, 355, 479, 528, 570
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	4 cut(s)	111, 227, 264, 535
DpnII	GATC	4 cut(s)	109, 225, 262, 533
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	529
Eco147I	AGGCCT	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	1 cut(s)	533
FaiI	YATR	7 cut(s)	161, 238, 240, 285, 426, 531, 540
FatI	CATG	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	3 cut(s)	153, 207, 400
Fnu4HI	GCNGC	5 cut(s)	365, 448, 451, 519, 522
Fsp4HI	GCNGC	5 cut(s)	365, 448, 451, 519, 522
FspBI	CTAG	3 cut(s)	80, 323, 571
GlaI	GCGC	2 cut(s)	368, 454
GluI	GCNGC	5 cut(s)	365, 448, 451, 519, 522
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	355, 528
HapII	CCGG	2 cut(s)	201, 361
HhaI	GCGC	2 cut(s)	369, 455
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	2 cut(s)	367, 453
HinP1I	GCGC	2 cut(s)	367, 453
HincII	GTYRAC	2 cut(s)	154, 401
HindII	GTYRAC	2 cut(s)	154, 401
HinfI	GANTC	3 cut(s)	155, 181, 277
HpaII	CCGG	2 cut(s)	201, 361
HphI	GGTGA	2 cut(s)	182, 476
Hpy166II	GTNNAC	5 cut(s)	77, 154, 180, 208, 401
Hpy188I	TCNGA	3 cut(s)	54, 114, 559
Hpy188III	TCNNGA	2 cut(s)	229, 248
Hpy8I	GTNNAC	5 cut(s)	77, 154, 180, 208, 401
Hpy99I	CGWCG	4 cut(s)	155, 402, 405, 491
HpyAV	CCTTC	3 cut(s)	245, 461, 487
HpyCH4III	ACNGT	2 cut(s)	139, 274
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 381
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	2 cut(s)	367, 453
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 225, 262, 533
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	1 cut(s)	459
MaeI	CTAG	3 cut(s)	80, 323, 571
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	304, 503
MalI	GATC	4 cut(s)	111, 227, 264, 535
MboI	GATC	4 cut(s)	109, 225, 262, 533
MhlI	GDGCHC	2 cut(s)	414, 476
MluCI	AATT	2 cut(s)	128, 186
MlyI	GAGTC	2 cut(s)	149, 175
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	6 cut(s)	203, 311, 333, 345, 405, 553
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	450
MspI	CCGG	2 cut(s)	201, 361
Mva1269I	GAATGC	2 cut(s)	68, 70
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	361, 381
NcoI	CCATGG	1 cut(s)	529
NdeII	GATC	4 cut(s)	109, 225, 262, 533
NlaIII	CATG	1 cut(s)	533
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	503
NsiI	ATGCAT	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	355
PctI	GAATGC	2 cut(s)	68, 70
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	5 cut(s)	366, 449, 452, 520, 523
PleI	GAGTC	2 cut(s)	149, 175
PpsI	GAGTC	2 cut(s)	149, 175
PstNI	CAGNNNCTG	1 cut(s)	343
SalI	GTCGAC	2 cut(s)	152, 399
SatI	GCNGC	5 cut(s)	365, 448, 451, 519, 522
Sau3AI	GATC	4 cut(s)	109, 225, 262, 533
SchI	GAGTC	2 cut(s)	149, 175
SduI	GDGCHC	2 cut(s)	414, 476
SetI	ASST	4 cut(s)	195, 322, 462, 498
SgrDI	CGTCGACG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	2 cut(s)	128, 186
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	6 cut(s)	259, 294, 364, 450, 518, 521
SspMI	CTAG	3 cut(s)	80, 323, 571
StuI	AGGCCT	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	139, 274
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	153, 400
TasI	AATT	2 cut(s)	128, 186
TauI	GCSGC	4 cut(s)	367, 453, 521, 524
TfiI	GAWTC	1 cut(s)	277
TscAI	CASTG	3 cut(s)	33, 142, 550
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	3 cut(s)	17, 228, 423
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	3 cut(s)	33, 142, 550
Van91I	CCANNNNNTGG	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	2 cut(s)	174, 536
XmiI	GTMKAC	3 cut(s)	153, 207, 400
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	3 cut(s)	80, 323, 571
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.