RLG00000025240

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001788
Physical Location & Seq
Forward (+)
43284130 .. 43285974
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025240

Sequence Viewer

Length: 1014 bp
ATGAAGTCTCTTATTCTTATTATTTTAGTGATATTGGCTCTTTTTTCTTTTCTGAATGGATTGGATGCAAGGAAACATGCAAGGAAACTTGCTCCACTAGACCAAGTTTCAACTACCATTGTAGTTGATCAGAATGGTAAAGGACAATTTACCACTGTTCAACAAGCCGTCGACTCTATACCACCAAATAACCCAGCGTGGACTCTAATTCACCTCAACTCTGGTGTCTACAATGAAAAAGTTGAGATCAAGAAACCATATATTATTCTTGAAGGAGACCTCGATCAACAAACTGTGATTCAATTTGGAGATGGCAGAAGTGTTGTTACCAGTCCTACATTTAAGTTGAATGCGGATAATTTTGTGGCACGATATATCGTATTTAAGAATACCTATGATAATCTTCCTTCTAAATTAGACGCCAACGGGGTCAACACTACTTGGGCACCCGCAGCTGCAATTGCCGGAGACAGAGCAAGTTTTTACCATTGCAGCTTCATTAGCTTGCAGGACACATTGACTGATGCCAAAGGTCGTCATTACTTCTATGACTGCCAAATTTCCGGCGCCATAGACTTCATTTGGGGAAATGCACAATCAATTTACGAGAATTGCCAGATCAATTCATTGGCATCAAAAATAGCTCCACGGGTAGGTTTTATTACAGCACAGGCTCGTGAAAGTCCAGAGGAAAGTACTGGTTTTGTATTCAAAAATTGTCGTGTGACTGGATCTGGTCCTATACATCTAGGAAGAGCTCATACAAACTACGCAAGAGTATTGTTTGCTGGGACAACAATGGACAATGTTATTACGCCAGAAGGTTGGGACGGGTCACGGTTTAAGCGCTCCGAGAATTTAATCTCCTTCTCGGAGGCCAATTGCAGGGGACCTGGAGCAAACATGTCGAAACGTGTAAACTGGGAGAAGAAACTATCAGATCAAGAAGTAAATGATTTGAGTAGTTTATCTTACATAAATCAAGATGGATGGATAGAGAAGCAACCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

338

Amino Acids

37.39

Weight (kDa)

7.64

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 40 - 327 1.5e-55 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 445, 566
AccI GTMKAC 2 cut(s) 171, 228
AciI CCGC 2 cut(s) 353, 450
AclWI GGATC 1 cut(s) 739
AcsI RAATTY 2 cut(s) 558, 856
AcyI GRCGYC 2 cut(s) 420, 567
AfaI GTAC 1 cut(s) 697
AfeI AGCGCT 1 cut(s) 848
AfiI CCNNNNNNNGG 2 cut(s) 653, 885
AflIII ACRYGT 2 cut(s) 903, 913
AgsI TTSAA 6 cut(s) 111, 161, 272, 302, 349, 712
AjnI CCWGG 1 cut(s) 892
AluBI AGCT 5 cut(s) 455, 495, 504, 644, 758
AluI AGCT 5 cut(s) 455, 495, 504, 644, 758
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 3 cut(s) 12, 270, 462
AlwI GGATC 1 cut(s) 739
Aor51HI AGCGCT 1 cut(s) 848
AoxI GGCC 1 cut(s) 876
ApeKI GCWGC 3 cut(s) 452, 455, 492
ApoI RAATTY 2 cut(s) 558, 856
AspLEI GCGC 2 cut(s) 569, 849
AspS9I GGNCC 2 cut(s) 737, 890
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 737, 890
BaeGI GKGCMC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 445, 566
BanII GRGCYC 1 cut(s) 760
BarI GAAGNNNNNNTAC 4 cut(s) 310, 342, 745, 777
BauI CACGAG 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 3 cut(s) 442, 464, 504
BccI CCATC 3 cut(s) 305, 980, 984
BceAI ACGGC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 888, 922
BciT130I CCWGG 1 cut(s) 894
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 3 cut(s) 12, 270, 462
BfaI CTAG 3 cut(s) 98, 749, 1008
BfoI RGCGCY 2 cut(s) 570, 850
BisI GCNGC 3 cut(s) 453, 456, 493
BlsI GCNGC 3 cut(s) 454, 457, 494
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 1 cut(s) 894
Bme18I GGWCC 2 cut(s) 737, 890
BmgT120I GGNCC 2 cut(s) 737, 890
BmiI GGNNCC 3 cut(s) 447, 568, 891
BmrFI CCNGG 1 cut(s) 894
BmrI ACTGGG 1 cut(s) 931
BmsI GCATC 3 cut(s) 55, 514, 641
BmuI ACTGGG 1 cut(s) 931
BpmI CTGGAG 1 cut(s) 915
BsaHI GRCGYC 2 cut(s) 420, 567
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 647
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 885
Bse1I ACTGG 4 cut(s) 330, 703, 733, 926
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 894
BseDI CCNNGG 1 cut(s) 647
BseGI GGATG 2 cut(s) 70, 995
BseLI CCNNNNNNNGG 2 cut(s) 653, 885
BseMI GCAATG 1 cut(s) 487
BseNI ACTGG 4 cut(s) 330, 703, 733, 926
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 3 cut(s) 442, 464, 504
BseYI CCCAGC 2 cut(s) 193, 788
BshFI GGCC 1 cut(s) 878
BshNI GGYRCC 2 cut(s) 445, 566
BsiHKAI GWGCWC 1 cut(s) 760
BsiSI CCGG 2 cut(s) 465, 564
BslFI GGGAC 3 cut(s) 805, 842, 903
BslI CCNNNNNNNGG 2 cut(s) 653, 885
BsmAI GTCTC 3 cut(s) 12, 270, 462
BsmFI GGGAC 3 cut(s) 805, 842, 903
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 878
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 448, 760
Bsp143I GATC 6 cut(s) 127, 246, 283, 618, 731, 940
BspACI CCGC 2 cut(s) 353, 450
BspANI GGCC 1 cut(s) 878
BspLI GGNNCC 3 cut(s) 447, 568, 891
BspPI GGATC 1 cut(s) 739
BspQI GCTCTTC 1 cut(s) 748
BspT107I GGYRCC 2 cut(s) 445, 566
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 4 cut(s) 330, 703, 733, 926
BssECI CCNNGG 1 cut(s) 647
BssMI GATC 6 cut(s) 127, 246, 283, 618, 731, 940
BssNI GRCGYC 2 cut(s) 420, 567
BssSI CACGAG 1 cut(s) 675
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 894
Bst4CI ACNGT 3 cut(s) 157, 295, 840
Bst6I CTCTTC 1 cut(s) 748
BstACI GRCGYC 2 cut(s) 420, 567
BstC8I GCNNGC 1 cut(s) 506
BstDSI CCRYGG 1 cut(s) 647
BstF5I GGATG 2 cut(s) 70, 995
BstH2I RGCGCY 2 cut(s) 570, 850
BstHHI GCGC 2 cut(s) 569, 849
BstKTI GATC 6 cut(s) 130, 249, 286, 621, 734, 943
BstMAI GTCTC 3 cut(s) 12, 270, 462
BstMBI GATC 6 cut(s) 127, 246, 283, 618, 731, 940
BstMWI GCNNNNNNNGC 3 cut(s) 452, 461, 501
BstNI CCWGG 1 cut(s) 894
BstNSI RCATGY 2 cut(s) 80, 907
BstSCI CCNGG 1 cut(s) 892
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 3 cut(s) 442, 464, 504
BstX2I RGATCY 1 cut(s) 731
BstXI CCANNNNNNTGG 1 cut(s) 825
BstYI RGATCY 1 cut(s) 731
BsuRI GGCC 1 cut(s) 878
BtgI CCRYGG 1 cut(s) 647
BtsCI GGATG 2 cut(s) 70, 995
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 506
CfoI GCGC 2 cut(s) 569, 849
Cfr13I GGNCC 2 cut(s) 737, 890
CseI GACGC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 696
CviAII CATG 2 cut(s) 77, 904
CviJI RGCY 9 cut(s) 38, 167, 455, 495, 504, 644, 674, 758, 878
CviKI_1 RGCY 9 cut(s) 38, 167, 455, 495, 504, 644, 674, 758, 878
CviQI GTAC 1 cut(s) 696
DinI GGCGCC 1 cut(s) 568
DpnI GATC 6 cut(s) 129, 248, 285, 620, 733, 942
DpnII GATC 6 cut(s) 127, 246, 283, 618, 731, 940
Eam1104I CTCTTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 748
Ecl136II GAGCTC 1 cut(s) 758
Eco24I GRGCYC 1 cut(s) 760
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 737, 890
Eco47III AGCGCT 1 cut(s) 848
Eco53kI GAGCTC 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 892
EcoT38I GRGCYC 1 cut(s) 760
EgeI GGCGCC 1 cut(s) 568
EheI GGCGCC 1 cut(s) 568
FaeI CATG 2 cut(s) 80, 907
FaqI GGGAC 3 cut(s) 805, 842, 903
FatI CATG 2 cut(s) 76, 903
FauI CCCGC 1 cut(s) 457
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 2 cut(s) 171, 228
Fnu4HI GCNGC 3 cut(s) 453, 456, 493
FokI GGATG 2 cut(s) 77, 1002
FriOI GRGCYC 1 cut(s) 760
Fsp4HI GCNGC 3 cut(s) 453, 456, 493
FspBI CTAG 3 cut(s) 98, 749, 1008
GlaI GCGC 2 cut(s) 568, 848
GluI GCNGC 3 cut(s) 453, 456, 493
GsaI CCCAGC 2 cut(s) 197, 792
GsuI CTGGAG 1 cut(s) 915
HaeII RGCGCY 2 cut(s) 570, 850
HaeIII GGCC 1 cut(s) 878
HapII CCGG 2 cut(s) 465, 564
HgaI GACGC 1 cut(s) 428
HhaI GCGC 2 cut(s) 569, 849
Hin1I GRCGYC 2 cut(s) 420, 567
Hin1II CATG 2 cut(s) 80, 907
Hin6I GCGC 2 cut(s) 567, 847
HinP1I GCGC 2 cut(s) 567, 847
HincII GTYRAC 2 cut(s) 172, 433
HindII GTYRAC 2 cut(s) 172, 433
HinfI GANTC 3 cut(s) 173, 202, 298
HpaII CCGG 2 cut(s) 465, 564
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 5 cut(s) 172, 201, 229, 433, 919
Hpy188I TCNGA 5 cut(s) 54, 132, 853, 874, 940
Hpy188III TCNNGA 6 cut(s) 250, 269, 677, 686, 944, 983
Hpy8I GTNNAC 5 cut(s) 172, 201, 229, 433, 919
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 4 cut(s) 266, 417, 815, 877
HpyCH4III ACNGT 3 cut(s) 157, 295, 840
HpyCH4IV ACGT 1 cut(s) 913
HpyCH4V TGCA 7 cut(s) 68, 80, 458, 492, 508, 593, 885
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 461, 501
HpySE526I ACGT 1 cut(s) 913
Hsp92I GRCGYC 2 cut(s) 420, 567
Hsp92II CATG 2 cut(s) 80, 907
HspAI GCGC 2 cut(s) 567, 847
KasI GGCGCC 1 cut(s) 566
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 6 cut(s) 127, 246, 283, 618, 731, 940
LguI GCTCTTC 1 cut(s) 748
LmnI GCTCC 4 cut(s) 97, 649, 854, 896
Lsp1109I GCAGC 3 cut(s) 442, 464, 504
LweI GCATC 3 cut(s) 55, 514, 641
MaeI CTAG 3 cut(s) 98, 749, 1008
MaeII ACGT 1 cut(s) 913
MaeIII GTNAC 3 cut(s) 325, 724, 834
MalI GATC 6 cut(s) 129, 248, 285, 620, 733, 942
MboI GATC 6 cut(s) 127, 246, 283, 618, 731, 940
MboII GAAGA 3 cut(s) 395, 765, 940
MfeI CAATTG 2 cut(s) 459, 880
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 2 cut(s) 448, 760
Mly113I GGCGCC 1 cut(s) 567
MlyI GAGTC 2 cut(s) 167, 196
MnlI CCTC 4 cut(s) 224, 290, 682, 868
MseI TTAA 4 cut(s) 342, 384, 843, 860
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 2 cut(s) 465, 564
MspR9I CCNGG 1 cut(s) 894
MunI CAATTG 2 cut(s) 459, 880
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 894
MwoI GCNNNNNNNGC 3 cut(s) 452, 461, 501
NarI GGCGCC 1 cut(s) 567
NdeII GATC 6 cut(s) 127, 246, 283, 618, 731, 940
NlaIII CATG 2 cut(s) 80, 907
NlaIV GGNNCC 3 cut(s) 447, 568, 891
NmuCI GTSAC 2 cut(s) 724, 834
NspI RCATGY 2 cut(s) 80, 907
PciI ACATGT 1 cut(s) 903
PciSI GCTCTTC 1 cut(s) 748
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 454, 457, 494
PleI GAGTC 2 cut(s) 167, 196
PluTI GGCGCC 1 cut(s) 570
PpsI GAGTC 2 cut(s) 167, 196
PpuMI RGGWCCY 1 cut(s) 890
PscI ACATGT 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 890
Psp6I CCWGG 1 cut(s) 892
PspFI CCCAGC 2 cut(s) 193, 788
PspGI CCWGG 1 cut(s) 892
PspN4I GGNNCC 3 cut(s) 447, 568, 891
PspPI GGNCC 2 cut(s) 737, 890
PspPPI RGGWCCY 1 cut(s) 890
PsuI RGATCY 1 cut(s) 731
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 697
RsaNI GTAC 1 cut(s) 696
SacI GAGCTC 1 cut(s) 760
SalI GTCGAC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 748
SaqAI TTAA 4 cut(s) 342, 384, 843, 860
SatI GCNGC 3 cut(s) 453, 456, 493
Sau3AI GATC 6 cut(s) 127, 246, 283, 618, 731, 940
Sau96I GGNCC 2 cut(s) 737, 890
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 2 cut(s) 167, 196
ScrFI CCNGG 1 cut(s) 894
SduI GDGCHC 2 cut(s) 448, 760
SfaNI GCATC 3 cut(s) 55, 514, 641
SfoI GGCGCC 1 cut(s) 568
SinI GGWCC 2 cut(s) 737, 890
SsiI CCGC 2 cut(s) 353, 450
SspDI GGCGCC 1 cut(s) 566
SspMI CTAG 3 cut(s) 98, 749, 1008
SstI GAGCTC 1 cut(s) 760
StyD4I CCNGG 1 cut(s) 892
TaaI ACNGT 3 cut(s) 157, 295, 840
TaiI ACGT 1 cut(s) 916
TaqI TCGA 3 cut(s) 171, 282, 908
TatI WGTACW 1 cut(s) 695
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 4 cut(s) 342, 384, 843, 860
Tru9I TTAA 4 cut(s) 342, 384, 843, 860
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 724, 834
TseI GCWGC 3 cut(s) 452, 455, 492
Tsp45I GTSAC 2 cut(s) 724, 834
TspDTI ATGAA 5 cut(s) 17, 249, 487, 568, 615
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 737, 890
XapI RAATTY 2 cut(s) 558, 856
XceI RCATGY 2 cut(s) 80, 907
XmiI GTMKAC 2 cut(s) 171, 228
XspI CTAG 3 cut(s) 98, 749, 1008
ZrmI AGTACT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.