Rh2AG207600

Pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001788
Physical Location & Seq
Reverse (-)
21089827 .. 21090339
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG207600.1

Sequence Viewer

Length: 405 bp
ATGAGGCTTTCTCCAACGTCCTCCACAAATGATAATGAGATAAATGAAAACACGCATATGTCCAATAGCTTGAACCGTCTATCTTCTAGTTCTCCTTCAAAGGTGAACGATCTAAAAGATGACGAGTTTCCGATTATTGAATTCTATAGGCGGAAATGTCAGATAATGTCTTTGAGCAAATTAATTGGCACTACTGGCTATATTACAGCACAAGGTCGTGAAGGTCCAGACGAAACTACTGGTTTTGTATTCAAAGATTGTTATGTATGTGGATCGGGCACTGCATTTCTTGGGAGAGCATACAGAGACTACTCAAGAGTCTTGTTTTCAGGGACGTATATGGAAAATGTTATTACCCCGGAGGGTTGGTCCCTTTGGACACCGCCACAAATTCAACATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

134

Amino Acids

15.08

Weight (kDa)

5.64

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 52 - 127 7.3e-15 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 151, 383
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 2 cut(s) 140, 390
AgsI TTSAA 5 cut(s) 73, 99, 140, 253, 395
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 1 cut(s) 280
ApoI RAATTY 2 cut(s) 140, 390
AseI ATTAAT 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 224, 369
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 2 cut(s) 224, 369
BaeGI GKGCMC 1 cut(s) 281
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 2 cut(s) 224, 369
BmgT120I GGNCC 2 cut(s) 224, 369
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 359
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 357
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bse1I ACTGG 2 cut(s) 199, 244
BseDI CCNNGG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 199, 244
BseSI GKGCMC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 2 cut(s) 346, 355
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 2 cut(s) 346, 355
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 109, 272
BspACI CCGC 2 cut(s) 151, 383
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 1 cut(s) 280
BsrI ACTGG 2 cut(s) 199, 244
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 2 cut(s) 109, 272
Bst4CI ACNGT 1 cut(s) 77
BstKTI GATC 2 cut(s) 112, 275
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 2 cut(s) 109, 272
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 224, 369
CviAII CATG 1 cut(s) 398
CviJI RGCY 3 cut(s) 7, 69, 198
CviKI_1 RGCY 3 cut(s) 7, 69, 198
DpnI GATC 2 cut(s) 111, 274
DpnII GATC 2 cut(s) 109, 272
EciI GGCGGA 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 224, 369
EcoRI GAATTC 1 cut(s) 140
FaeI CATG 1 cut(s) 401
FaqI GGGAC 2 cut(s) 346, 355
FatI CATG 1 cut(s) 397
FauNDI CATATG 1 cut(s) 57
FspBI CTAG 1 cut(s) 87
HapII CCGG 1 cut(s) 359
Hin1II CATG 1 cut(s) 401
HinfI GANTC 1 cut(s) 318
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 132, 162
Hpy188III TCNNGA 3 cut(s) 218, 227, 315
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 105, 215
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 2 cut(s) 17, 335
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpySE526I ACGT 2 cut(s) 17, 335
Hsp92II CATG 1 cut(s) 401
Kzo9I GATC 2 cut(s) 109, 272
LpnPI CCDG 5 cut(s) 180, 225, 240, 315, 372
MaeI CTAG 1 cut(s) 87
MaeII ACGT 2 cut(s) 17, 335
MalI GATC 2 cut(s) 111, 274
MboI GATC 2 cut(s) 109, 272
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 4 cut(s) 140, 179, 183, 390
MlyI GAGTC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 2 cut(s) 31, 355
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 359
NdeI CATATG 1 cut(s) 57
NdeII GATC 2 cut(s) 109, 272
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 1 cut(s) 371
NspI RCATGY 1 cut(s) 401
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PshBI ATTAAT 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 2 cut(s) 224, 369
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 182
Sau3AI GATC 2 cut(s) 109, 272
Sau96I GGNCC 2 cut(s) 224, 369
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 281
SetI ASST 6 cut(s) 20, 71, 105, 217, 226, 338
SfcI CTRYAG 1 cut(s) 145
SinI GGWCC 2 cut(s) 224, 369
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 4 cut(s) 140, 179, 183, 390
SsiI CCGC 2 cut(s) 151, 383
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 2 cut(s) 20, 338
TasI AATT 4 cut(s) 140, 179, 183, 390
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 224, 369
VspI ATTAAT 1 cut(s) 182
XapI RAATTY 2 cut(s) 140, 390
XceI RCATGY 1 cut(s) 401
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.