Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013379

Physical Location & Seq

Genomic Coordinates Reverse (-)

29027876 .. 29028767

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1301900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGAAATTTGGGTCTTGACAAGGATGGGTTTACCATCTCTGCTGTGATCACGGGCTGTGGCGATGATGTCGGTTTGCTTAGGCAACTGCATTCCGTGGTCGTGTCAGGTGGCTTTGATTCATATGTTTCGGTAAACAATTCTCTTGCAACTTACTACAGTAGAAATGGGTTTTTGGAAGAGGCGAAGTGGGTGTACTTGGTGATGGGAGAGGTGAGAGATGAAGCGTCTTGGAATTCGATGATTGTGGCGTATGGCCAGCACCGCCAAGGACTGAAAGCGCTGGGATTGTTTCAGGAAATGGTTCGGAGGGGGTTCAATGTCGACATGTTTACATTGGTAAGTGTTTTGACTGCATTTACGTGTGTGGAGGACTTGTTGGGTGGACTTCAGTTTCATGCTAAGTTGATCAAAACTGGTTTCCACCAGAATTCGCATGTTGGGAGTGGCTTGATTGATTTATATTCAAGGTGTGCTGGTGGCATGTCGGAATGCTGGAAAGTGTCTCAAGAGATCCCTTTTCCGGATTTGGTTCTTTGGAACACGATGATTTCTGGGTATTCTCAAAATGATGAGTACTCTGAAGATGCTCTTCATTGTTCCCGGCAAATGCAATGCCAACAATTAGAAAGCATATGCGAGATAAGAGGAGTGAAGAAGAAACCAGGTTGTGGTTGGATCGAGGTGAATACGAGGGTACATGTTTTTGTGGCTGAAGAGATTTACCACCCGATGATCAAAGAAATTCACGAATACTTGGAGGAGATGTCAAGGAAGAAGAAGCGAGCGGGCTATGTGCCTGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

270

Amino Acids

30.34

Weight (kDa)

5.85

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 120	1.4e-08	PPR repeat family
PPR	PF01535	77 - 106	3.5e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49710
fragaria_vesca	FvH4_1g18370
malus_domestica	MD15G1301900.v1.1
prunus_persica	Prupe.6G215200_v2.0.a1
pyrus_communis	pycom02g15520 pycom15g26470
rosa_chinensis	RchiOBHm_Chr2g0109081
rosa_laevigata	RLG00000017704
rosa_multiflora	Rmu_co8217570.1_g000001 Rmu_co8359919.1_g000001 Rmu_sc0003725.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134590
rosa_rugosa	Rorug02G0157000
rosa_samantha	Rh2AG207900 Rh2CG211300 Rh2DG214300
rosa_wichuraiana	Rw0G004070 Rw2G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccBSI	CCGCTC	1 cut(s)	788
AccI	GTMKAC	1 cut(s)	324
AccIII	TCCGGA	1 cut(s)	523
AciI	CCGC	2 cut(s)	265, 788
AclWI	GGATC	2 cut(s)	508, 686
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	4 cut(s)	7, 235, 430, 744
AcuI	CTGAAG	3 cut(s)	374, 603, 735
AfaI	GTAC	3 cut(s)	197, 578, 699
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	523, 671
AflIII	ACRYGT	3 cut(s)	327, 362, 700
AgsI	TTSAA	2 cut(s)	319, 468
AjnI	CCWGG	1 cut(s)	664
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	2 cut(s)	508, 686
Aor13HI	TCCGGA	1 cut(s)	523
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	4 cut(s)	7, 235, 430, 744
Asp700I	GAANNNNTTC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	3 cut(s)	214, 226, 697
BalI	TGGCCA	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	179, 211
BccI	CCATC	3 cut(s)	20, 44, 199
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	3 cut(s)	48, 408, 735
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	284
BmcAI	AGTACT	1 cut(s)	578
Bme1390I	CCNGG	2 cut(s)	604, 666
BmrFI	CCNGG	2 cut(s)	604, 666
BmsI	GCATC	1 cut(s)	577
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	604
BsaAI	YACGTR	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	96, 268
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 752, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 671
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	620
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	96, 268
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	523, 671
BseMI	GCAATG	1 cut(s)	620
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	663, 776
BseYI	CCCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	524, 604
BslI	CCNNNNNNNGG	2 cut(s)	523, 671
BsmAI	GTCTC	1 cut(s)	510
BsmI	GAATGC	2 cut(s)	91, 497
BsnI	GGCC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	5 cut(s)	48, 408, 513, 678, 735
BspACI	CCGC	2 cut(s)	265, 788
BspANI	GGCC	1 cut(s)	258
BspEI	TCCGGA	1 cut(s)	523
BspPI	GGATC	2 cut(s)	508, 686
BspQI	GCTCTTC	1 cut(s)	597
BsrBI	CCGCTC	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	96, 268
BssMI	GATC	5 cut(s)	48, 408, 513, 678, 735
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	3 cut(s)	174, 597, 711
BstBAI	YACGTR	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	260, 786, 790
BstDEI	CTNAG	2 cut(s)	80, 402
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	5 cut(s)	51, 411, 516, 681, 738
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	5 cut(s)	48, 408, 513, 678, 735
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	4 cut(s)	331, 440, 487, 704
BstSCI	CCNGG	2 cut(s)	602, 664
BstSFI	CTRYAG	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	260, 786, 790
CfoI	GCGC	1 cut(s)	283
CseI	GACGC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	3 cut(s)	196, 577, 698
CviAII	CATG	5 cut(s)	328, 398, 437, 484, 701
CviJI	RGCY	6 cut(s)	57, 114, 258, 450, 713, 792
CviKI_1	RGCY	6 cut(s)	57, 114, 258, 450, 713, 792
CviQI	GTAC	3 cut(s)	196, 577, 698
DdeI	CTNAG	2 cut(s)	80, 402
DpnI	GATC	5 cut(s)	50, 410, 515, 680, 737
DpnII	GATC	5 cut(s)	48, 408, 513, 678, 735
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	3 cut(s)	174, 597, 711
EarI	CTCTTC	3 cut(s)	174, 597, 711
Eco130I	CCWWGG	1 cut(s)	268
Eco47III	AGCGCT	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	374, 603, 735
EcoRI	GAATTC	2 cut(s)	235, 430
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	5 cut(s)	331, 401, 440, 487, 704
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FatI	CATG	5 cut(s)	327, 397, 436, 483, 700
FauI	CCCGC	1 cut(s)	781
FauNDI	CATATG	2 cut(s)	124, 635
FbaI	TGATCA	3 cut(s)	48, 408, 735
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	524, 604
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	331, 401, 440, 487, 704
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	2 cut(s)	524, 604
HphI	GGTGA	3 cut(s)	214, 226, 697
Hpy166II	GTNNAC	6 cut(s)	33, 136, 196, 325, 333, 386
Hpy188I	TCNGA	3 cut(s)	309, 490, 583
Hpy188III	TCNNGA	5 cut(s)	17, 296, 509, 524, 749
Hpy8I	GTNNAC	6 cut(s)	33, 136, 196, 325, 333, 386
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	4 cut(s)	91, 149, 356, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	80, 402
HpySE526I	ACGT	1 cut(s)	362
Hsp92II	CATG	5 cut(s)	331, 401, 440, 487, 704
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	523
Ksp22I	TGATCA	3 cut(s)	48, 408, 735
Kzo9I	GATC	5 cut(s)	48, 408, 513, 678, 735
LguI	GCTCTTC	1 cut(s)	597
LweI	GCATC	1 cut(s)	577
MabI	ACCWGGT	1 cut(s)	664
MaeII	ACGT	1 cut(s)	362
MalI	GATC	5 cut(s)	50, 410, 515, 680, 737
MbiI	CCGCTC	1 cut(s)	788
MboI	GATC	5 cut(s)	48, 408, 513, 678, 735
MboII	GAAGA	8 cut(s)	191, 584, 596, 667, 670, 728, 787, 790
MflI	RGATCY	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	6 cut(s)	7, 139, 235, 430, 623, 744
MluNI	TGGCCA	1 cut(s)	258
MmeI	TCCRAC	2 cut(s)	468, 656
MnlI	CCTC	8 cut(s)	175, 205, 303, 364, 641, 676, 687, 754
Mox20I	TGGCCA	1 cut(s)	258
MroI	TCCGGA	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	361
Msp20I	TGGCCA	1 cut(s)	258
MspI	CCGG	2 cut(s)	524, 604
MspR9I	CCNGG	2 cut(s)	604, 666
Mva1269I	GAATGC	2 cut(s)	91, 497
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	604
NdeI	CATATG	2 cut(s)	124, 635
NdeII	GATC	5 cut(s)	48, 408, 513, 678, 735
NlaIII	CATG	5 cut(s)	331, 401, 440, 487, 704
NspI	RCATGY	4 cut(s)	331, 440, 487, 704
PciI	ACATGT	2 cut(s)	327, 700
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	2 cut(s)	91, 497
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	671
Ppu21I	YACGTR	1 cut(s)	363
PscI	ACATGT	2 cut(s)	327, 700
Psp6I	CCWGG	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	3 cut(s)	197, 578, 699
RsaNI	GTAC	3 cut(s)	196, 577, 698
RseI	CAYNNNNRTG	1 cut(s)	361
SalI	GTCGAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	597
Sau3AI	GATC	5 cut(s)	48, 408, 513, 678, 735
ScaI	AGTACT	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	604, 666
SetI	ASST	6 cut(s)	112, 216, 365, 473, 670, 687
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	6 cut(s)	7, 139, 235, 430, 623, 744
SsiI	CCGC	2 cut(s)	265, 788
StyD4I	CCNGG	2 cut(s)	602, 664
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	3 cut(s)	239, 324, 681
TasI	AATT	6 cut(s)	7, 139, 235, 430, 623, 744
TatI	WGTACW	2 cut(s)	195, 576
TfiI	GAWTC	1 cut(s)	119
TspDTI	ATGAA	4 cut(s)	111, 237, 386, 584
TspGWI	ACGGA	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	671
XapI	RAATTY	4 cut(s)	7, 235, 430, 744
XceI	RCATGY	4 cut(s)	331, 440, 487, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.