Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013379

Physical Location & Seq

Genomic Coordinates Reverse (-)

21126436 .. 21128860

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAACCAAATCCAATGGACCTTGCAAACCTTCCGCAACGTTTTAAAGACATGCATAGCCGAAAGAGACCTCTTCACAGGCAAAGCCCTCCATGCACTCTACTTCAAGTCCCTCCTTCCTTCGTCCACCTACATTTCCAACCACTTCATCCTCCTCTACTCCAAATGCGGCCGTCTCATCTCCGCCCGGAACGCCTTTTCCGCCACCCAAGACCCCAATGTCTTCTCCTTCAACGCCATCATGGCCGCCTACGCCAAAGAATCGCAGACCCGAATTGCACACAACTTGTTCGATGAAATTCCCCAACCGGACTTGGTCTCTTACAACACCCTCATTTCGGCTTATGCTGAAAAGGGAGAGACTGAGCAGGCATTGGGGTTGTTTAGTGGGATGAGAGAAGTGGGTCTTGATGCAGATGGGTTTACTATCTCGGCGGTGATCACGGGTTGTTGTGATGATGTTGGTTTGATTAGGGAGTTGCATTCGTTGATAGTTAAAGGTGGGTTTGATTCGTATGTTTCGGTGAACAATGCGTTGTTGACTTACTATAGTAAGAATGGGTTGTTGGAGGAGGCGAAGAGGGTGTTTAATGTGATGGGAGAAATGAGAGATGAAGTGACATGGAATTCGATGATTGTGGCGTATGGGCAGCACCGAAAAGGGTTGAAGGCGCTGGGGTTGTTTCAAGACATGGTGAGGAGGGGGTTTGATGTGGACATGTTTACATTGGCTAGTGTGTTGACTGCGTTTACTTGCGTGGAGGACTTGTTGGGTGGGCTTCAGTTTCATGCTAAGTTGATCAAAACCGGTTTCCACCAGAATTCTCATGTTGGGAGTGGGCTGATTGATTTGTATTCGAAGTGTGTTGGTGGCATGTCAGAGTGCAGGAAAGTATTTGAAGAGATTCCTGCTCCGGATTTGGTTCTCTGGAACACAATGATTTCTGGATACTCTCAAAATGACGAGTTCTCTGAAGATGCTATTAATTGTTTGCGGCAGATGCAACGTGTTGGTTACTACCCTGATGATTGCAGCTTCGTCTGTGTGATTAGTGCATGCTCTAATTTGTCGTCACCCTTCCAGGGGAAGCAGATACATGCCTTGGCAATCAAATCTGAGATCCCTTCGAATAGGATTTCAGTGAATAATGCTCTAGTTGCAATTTTTTACCAGATAATGTCAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

396

Amino Acids

44.06

Weight (kDa)

5.88

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	102 - 132	1.5e-06	PPR repeat
PPR_2	PF13041	103 - 152	8.3e-13	PPR repeat family
PPR	PF01535	106 - 135	4.3e-07	PPR repeat
PPR_2	PF13041	204 - 250	1.7e-09	PPR repeat family
PPR	PF01535	206 - 236	2.5e-08	PPR repeat
PPR_2	PF13041	305 - 355	7.5e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49710
fragaria_vesca	FvH4_1g18370
malus_domestica	MD15G1301900.v1.1
prunus_persica	Prupe.6G215200_v2.0.a1
pyrus_communis	pycom02g15520 pycom15g26470
rosa_chinensis	RchiOBHm_Chr2g0109081
rosa_laevigata	RLG00000017704
rosa_multiflora	Rmu_co8217570.1_g000001 Rmu_co8359919.1_g000001 Rmu_sc0003725.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134590
rosa_rugosa	Rorug02G0157000
rosa_samantha	Rh2AG207900 Rh2CG211300 Rh2DG214300
rosa_wichuraiana	Rw0G004070 Rw2G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	7 cut(s)	34, 168, 183, 201, 246, 434, 994
AclI	AACGTT	1 cut(s)	39
AclWI	GGATC	1 cut(s)	1114
AcoI	YGGCCR	2 cut(s)	169, 243
AcsI	RAATTY	3 cut(s)	297, 625, 820
AcuI	CTGAAG	2 cut(s)	764, 993
AfiI	CCNNNNNNNGG	3 cut(s)	337, 1082, 1083
AflIII	ACRYGT	2 cut(s)	717, 1006
AgeI	ACCGGT	1 cut(s)	806
AgsI	TTSAA	5 cut(s)	106, 232, 667, 686, 899
AjnI	CCWGG	1 cut(s)	1080
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	1 cut(s)	1035
AluI	AGCT	1 cut(s)	1035
Alw26I	GTCTC	4 cut(s)	60, 179, 322, 353
AlwI	GGATC	1 cut(s)	1114
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	2 cut(s)	169, 243
ApeKI	GCWGC	2 cut(s)	649, 1032
ApoI	RAATTY	3 cut(s)	297, 625, 820
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
AseI	ATTAAT	1 cut(s)	984
AsiGI	ACCGGT	1 cut(s)	806
Asp700I	GAANNNNTTC	1 cut(s)	903
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	4 cut(s)	448, 535, 706, 1065
AsuII	TTCGAA	2 cut(s)	857, 1127
AvaII	GGWCC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	661, 1044
BccI	CCATC	3 cut(s)	245, 410, 589
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	1082
BciVI	GTATCC	1 cut(s)	941
BclI	TGATCA	2 cut(s)	438, 798
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	4 cut(s)	60, 179, 322, 353
BfaI	CTAG	2 cut(s)	732, 1154
BfmI	CTRYAG	1 cut(s)	547
BfoI	RGCGCY	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	941
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	169, 246, 650, 995, 1033
BlsI	GCNGC	5 cut(s)	170, 247, 651, 996, 1034
Bme1390I	CCNGG	2 cut(s)	187, 1082
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	187, 1082
BmsI	GCATC	3 cut(s)	400, 967, 990
BpiI	GAAGAC	1 cut(s)	214
Bpu14I	TTCGAA	2 cut(s)	857, 1127
BpuMI	CCSGG	1 cut(s)	187
BsaI	GGTCTC	2 cut(s)	60, 322
BsaJI	CCNNGG	2 cut(s)	1081, 1101
BsaWI	WCCGGW	3 cut(s)	307, 806, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 1082, 1083
Bse118I	RCCGGY	1 cut(s)	806
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	1 cut(s)	1082
BseDI	CCNNGG	2 cut(s)	1081, 1101
BseGI	GGATG	2 cut(s)	147, 396
BseLI	CCNNNNNNNGG	3 cut(s)	337, 1082, 1083
BseMII	CTCAG	2 cut(s)	354, 1107
BseRI	GAGGAG	3 cut(s)	143, 584, 712
BseX3I	CGGCCG	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	661, 1044
BseYI	CCCAGC	1 cut(s)	673
BsgI	GTGCAG	1 cut(s)	904
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	171, 245
BshTI	ACCGGT	1 cut(s)	806
BsiEI	CGRYCG	1 cut(s)	172
BsiSI	CCGG	4 cut(s)	187, 308, 807, 914
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	337, 1082, 1083
BsmAI	GTCTC	4 cut(s)	60, 179, 322, 353
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	171, 245
Bso31I	GGTCTC	2 cut(s)	60, 322
Bsp119I	TTCGAA	2 cut(s)	857, 1127
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	3 cut(s)	438, 798, 1119
BspACI	CCGC	7 cut(s)	34, 168, 183, 201, 246, 434, 994
BspANI	GGCC	2 cut(s)	171, 245
BspCNI	CTCAG	2 cut(s)	355, 1108
BspEI	TCCGGA	1 cut(s)	913
BspPI	GGATC	1 cut(s)	1114
BspT104I	TTCGAA	2 cut(s)	857, 1127
BspTNI	GGTCTC	2 cut(s)	60, 322
BsrFI	RCCGGY	1 cut(s)	806
BssAI	RCCGGY	1 cut(s)	806
BssECI	CCNNGG	2 cut(s)	1081, 1101
BssMI	GATC	3 cut(s)	438, 798, 1119
BssT1I	CCWWGG	1 cut(s)	1101
Bst2UI	CCWGG	1 cut(s)	1082
Bst6I	CTCTTC	3 cut(s)	77, 572, 894
BstBI	TTCGAA	2 cut(s)	857, 1127
BstC8I	GCNNGC	2 cut(s)	369, 1057
BstDEI	CTNAG	3 cut(s)	363, 792, 1116
BstF5I	GGATG	2 cut(s)	147, 396
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	3 cut(s)	441, 801, 1122
BstMAI	GTCTC	4 cut(s)	60, 179, 322, 353
BstMBI	GATC	3 cut(s)	438, 798, 1119
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 191, 200, 242, 251, 1000, 1157
BstNI	CCWGG	1 cut(s)	1082
BstNSI	RCATGY	5 cut(s)	54, 721, 877, 1059, 1100
BstSCI	CCNGG	2 cut(s)	185, 1080
BstSFI	CTRYAG	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	661, 1044
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	1119
BstYI	RGATCY	1 cut(s)	1119
BstZI	CGGCCG	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	941
BsuRI	GGCC	2 cut(s)	171, 245
BtsCI	GGATG	2 cut(s)	147, 396
BtsIMutI	CAGTG	1 cut(s)	1146
Cac8I	GCNNGC	2 cut(s)	369, 1057
CfoI	GCGC	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	806
Cfr13I	GGNCC	1 cut(s)	18
CspAI	ACCGGT	1 cut(s)	806
CviJI	RGCY	9 cut(s)	59, 86, 171, 245, 341, 731, 778, 841, 1035
CviKI_1	RGCY	9 cut(s)	59, 86, 171, 245, 341, 731, 778, 841, 1035
DdeI	CTNAG	3 cut(s)	363, 792, 1116
DpnI	GATC	3 cut(s)	440, 800, 1121
DpnII	GATC	3 cut(s)	438, 798, 1119
DraI	TTTAAA	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	169, 243
EagI	CGGCCG	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	77, 572, 894
EarI	CTCTTC	3 cut(s)	77, 572, 894
EciI	GGCGGA	2 cut(s)	172, 190
EclXI	CGGCCG	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	1101
Eco31I	GGTCTC	2 cut(s)	60, 322
Eco47I	GGWCC	1 cut(s)	18
Eco52I	CGGCCG	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	764, 993
EcoRI	GAATTC	2 cut(s)	625, 820
EcoRII	CCWGG	1 cut(s)	1080
EcoT14I	CCWWGG	1 cut(s)	1101
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	1101
Esp3I	CGTCTC	1 cut(s)	179
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	94
FbaI	TGATCA	2 cut(s)	438, 798
Fnu4HI	GCNGC	5 cut(s)	169, 246, 650, 995, 1033
FokI	GGATG	2 cut(s)	134, 403
Fsp4HI	GCNGC	5 cut(s)	169, 246, 650, 995, 1033
FspBI	CTAG	2 cut(s)	732, 1154
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	5 cut(s)	169, 246, 650, 995, 1033
GsaI	CCCAGC	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	2 cut(s)	171, 245
HapII	CCGG	4 cut(s)	187, 308, 807, 914
HhaI	GCGC	1 cut(s)	673
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	2 cut(s)	540, 741
HindII	GTYRAC	2 cut(s)	540, 741
HinfI	GANTC	3 cut(s)	260, 509, 904
HpaII	CCGG	4 cut(s)	187, 308, 807, 914
HphI	GGTGA	4 cut(s)	448, 535, 706, 1065
Hpy166II	GTNNAC	8 cut(s)	126, 423, 526, 540, 715, 723, 741, 750
Hpy188I	TCNGA	3 cut(s)	880, 973, 1117
Hpy188III	TCNNGA	5 cut(s)	407, 686, 914, 928, 945
Hpy8I	GTNNAC	8 cut(s)	126, 423, 526, 540, 715, 723, 741, 750
HpyAV	CCTTC	7 cut(s)	40, 125, 129, 238, 661, 1087, 1134
HpyCH4IV	ACGT	2 cut(s)	39, 1006
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 191, 200, 242, 251, 1000, 1157
HpyF3I	CTNAG	3 cut(s)	363, 792, 1116
HpySE526I	ACGT	2 cut(s)	39, 1006
HspAI	GCGC	1 cut(s)	671
Kpn2I	TCCGGA	1 cut(s)	913
Ksp22I	TGATCA	2 cut(s)	438, 798
Kzo9I	GATC	3 cut(s)	438, 798, 1119
LmnI	GCTCC	1 cut(s)	916
Lsp1109I	GCAGC	2 cut(s)	661, 1044
LweI	GCATC	3 cut(s)	400, 967, 990
MaeI	CTAG	2 cut(s)	732, 1154
MaeII	ACGT	2 cut(s)	39, 1006
MaeIII	GTNAC	3 cut(s)	616, 1013, 1071
MalI	GATC	3 cut(s)	440, 800, 1121
MboI	GATC	3 cut(s)	438, 798, 1119
MboII	GAAGA	5 cut(s)	64, 214, 589, 911, 986
MflI	RGATCY	1 cut(s)	1119
MluCI	AATT	7 cut(s)	273, 297, 625, 820, 985, 1063, 1161
MmeI	TCCRAC	2 cut(s)	162, 546
Mph1103I	ATGCAT	1 cut(s)	56
MroI	TCCGGA	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	903
MseI	TTAA	4 cut(s)	44, 495, 588, 984
MspI	CCGG	4 cut(s)	187, 308, 807, 914
MspR9I	CCNGG	2 cut(s)	187, 1082
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	7 cut(s)	92, 191, 200, 242, 251, 1000, 1157
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	438, 798, 1119
NmeAIII	GCCGAG	1 cut(s)	410
NmuCI	GTSAC	2 cut(s)	616, 1071
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	5 cut(s)	54, 721, 877, 1059, 1100
NspV	TTCGAA	2 cut(s)	857, 1127
PaeI	GCATGC	1 cut(s)	1059
PciI	ACATGT	1 cut(s)	717
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	903
PfeI	GAWTC	3 cut(s)	260, 509, 904
PflFI	GACNNNGTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	806
PkrI	GCNGC	5 cut(s)	170, 247, 651, 996, 1034
PscI	ACATGT	1 cut(s)	717
PshBI	ATTAAT	1 cut(s)	984
Psp1406I	AACGTT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	1080
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	1080
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	1119
PsyI	GACNNNGTC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	44, 495, 588, 984
SatI	GCNGC	5 cut(s)	169, 246, 650, 995, 1033
Sau3AI	GATC	3 cut(s)	438, 798, 1119
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	187, 1082
SetI	ASST	8 cut(s)	23, 32, 42, 72, 131, 502, 1009, 1037
SfaNI	GCATC	3 cut(s)	400, 967, 990
SfcI	CTRYAG	1 cut(s)	547
SfuI	TTCGAA	2 cut(s)	857, 1127
SinI	GGWCC	1 cut(s)	18
SphI	GCATGC	1 cut(s)	1059
Sse9I	AATT	7 cut(s)	273, 297, 625, 820, 985, 1063, 1161
SsiI	CCGC	7 cut(s)	34, 168, 183, 201, 246, 434, 994
SspMI	CTAG	2 cut(s)	732, 1154
StyD4I	CCNGG	2 cut(s)	185, 1080
StyI	CCWWGG	1 cut(s)	1101
TaiI	ACGT	2 cut(s)	42, 1009
TaqI	TCGA	4 cut(s)	291, 629, 857, 1127
TasI	AATT	7 cut(s)	273, 297, 625, 820, 985, 1063, 1161
TauI	GCSGC	3 cut(s)	171, 248, 997
TfiI	GAWTC	3 cut(s)	260, 509, 904
Tru1I	TTAA	4 cut(s)	44, 495, 588, 984
Tru9I	TTAA	4 cut(s)	44, 495, 588, 984
TscAI	CASTG	1 cut(s)	1146
TseFI	GTSAC	2 cut(s)	616, 1071
TseI	GCWGC	2 cut(s)	649, 1032
Tsp45I	GTSAC	2 cut(s)	616, 1071
TspDTI	ATGAA	5 cut(s)	17, 136, 309, 627, 776
TspRI	CASTG	1 cut(s)	1146
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	18
VspI	ATTAAT	1 cut(s)	984
XapI	RAATTY	3 cut(s)	297, 625, 820
XceI	RCATGY	5 cut(s)	54, 721, 877, 1059, 1100
XmnI	GAANNNNTTC	1 cut(s)	903
XspI	CTAG	2 cut(s)	732, 1154
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.