Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8217570.1

Orthogroup ID

OG0013379

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 735

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8217570.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

tacatttccaaccacttcatcctcctctactccaaatgcggccgtctcatctccgcccggaacgccttttccgccacccaagaccccaatgtcttctccttcaacgccatcatggccgcctacgccaaagaatcgcagacccgaattgcacacaacttgttcgatgaaattccccaaccggacttggtctcttacaacaccctcatttcggcttatgctgaaaagggagagactgagcaggcattggggttgtttagtgggatgagagaagtgggtcttgatgctgatgggtttactatctcggcggtgatcacgggttgttgtgatgatgttggtttgatcagggagttgcattcgttgataattaaaggtgggtttgattcgtatgtttcggtgaacaatgcgttgttgacttactatagtaagaatgggttgttggaggaggcgaagagggtgtttaatgtgatgggagaaatgagagatgaagtgacatggaattcgatgattgtggcgtatgggcagcaccgacaagggttgaaggcgctggggttgtttcaagacatggtgaggagggggtttgatgtggacatgtttacattggctagtgtgttgactgcgtttacttgcgtggaggacttgttgggtgggcttcagtttcatgctaagttgatcaaaaccggtttccaccagaattctcatgttgggagtgggctgattgatttgtattcgaagtgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

245

Amino Acids

27.08

Weight (kDa)

5.62

Isoelectric Point (pI)

23.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49710
fragaria_vesca	FvH4_1g18370
malus_domestica	MD15G1301900.v1.1
prunus_persica	Prupe.6G215200_v2.0.a1
pyrus_communis	pycom02g15520 pycom15g26470
rosa_chinensis	RchiOBHm_Chr2g0109081
rosa_laevigata	RLG00000017704
rosa_multiflora	Rmu_co8217570.1_g000001 Rmu_co8359919.1_g000001 Rmu_sc0003725.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134590
rosa_rugosa	Rorug02G0157000
rosa_samantha	Rh2AG207900 Rh2CG211300 Rh2DG214300
rosa_wichuraiana	Rw0G004070 Rw2G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AciI	CCGC	5 cut(s)	39, 54, 72, 117, 305
AcoI	YGGCCR	2 cut(s)	40, 114
AcsI	RAATTY	3 cut(s)	168, 496, 691
AcuI	CTGAAG	1 cut(s)	635
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	588
AgeI	ACCGGT	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	103, 538, 557
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
Alw26I	GTCTC	3 cut(s)	50, 193, 224
AoxI	GGCC	2 cut(s)	40, 114
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	3 cut(s)	168, 496, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AsiGI	ACCGGT	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	319, 406, 577
AsuII	TTCGAA	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	3 cut(s)	116, 281, 460
BceAI	ACGGC	1 cut(s)	27
BclI	TGATCA	3 cut(s)	309, 339, 669
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	3 cut(s)	50, 193, 224
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	545
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	3 cut(s)	40, 117, 521
BlsI	GCNGC	3 cut(s)	41, 118, 522
Bme1390I	CCNGG	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	85
Bpu14I	TTCGAA	1 cut(s)	728
BpuMI	CCSGG	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	193
BsaWI	WCCGGW	2 cut(s)	178, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	677
BseGI	GGATG	2 cut(s)	18, 267
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	3 cut(s)	14, 455, 583
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	532
BseYI	CCCAGC	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	42, 116
BshTI	ACCGGT	1 cut(s)	677
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	58, 179, 678
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	3 cut(s)	50, 193, 224
BsmBI	CGTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	42, 116
Bso31I	GGTCTC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	728
Bsp143I	GATC	3 cut(s)	309, 339, 669
BspACI	CCGC	5 cut(s)	39, 54, 72, 117, 305
BspANI	GGCC	2 cut(s)	42, 116
BspCNI	CTCAG	1 cut(s)	226
BspT104I	TTCGAA	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	677
BssMI	GATC	3 cut(s)	309, 339, 669
Bst6I	CTCTTC	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	234, 663
BstF5I	GGATG	2 cut(s)	18, 267
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	3 cut(s)	312, 342, 672
BstMAI	GTCTC	3 cut(s)	50, 193, 224
BstMBI	GATC	3 cut(s)	309, 339, 669
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 71, 113, 122
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	85
BstZI	CGGCCG	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	42, 116
BtsCI	GGATG	2 cut(s)	18, 267
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	677
CspAI	ACCGGT	1 cut(s)	677
CviAII	CATG	6 cut(s)	112, 492, 562, 589, 659, 698
CviJI	RGCY	6 cut(s)	42, 116, 212, 602, 649, 712
CviKI_1	RGCY	6 cut(s)	42, 116, 212, 602, 649, 712
DdeI	CTNAG	2 cut(s)	234, 663
DpnI	GATC	3 cut(s)	311, 341, 671
DpnII	GATC	3 cut(s)	309, 339, 669
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	2 cut(s)	40, 114
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
EciI	GGCGGA	2 cut(s)	43, 61
EclXI	CGGCCG	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	193
Eco52I	CGGCCG	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	635
EcoRI	GAATTC	2 cut(s)	496, 691
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	6 cut(s)	115, 495, 565, 592, 662, 701
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	6 cut(s)	111, 491, 561, 588, 658, 697
FbaI	TGATCA	3 cut(s)	309, 339, 669
Fnu4HI	GCNGC	3 cut(s)	40, 117, 521
FokI	GGATG	2 cut(s)	5, 274
Fsp4HI	GCNGC	3 cut(s)	40, 117, 521
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	3 cut(s)	40, 117, 521
GsaI	CCCAGC	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	2 cut(s)	42, 116
HapII	CCGG	3 cut(s)	58, 179, 678
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	6 cut(s)	115, 495, 565, 592, 662, 701
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	2 cut(s)	411, 612
HindII	GTYRAC	2 cut(s)	411, 612
HinfI	GANTC	2 cut(s)	131, 380
HpaII	CCGG	3 cut(s)	58, 179, 678
HphI	GGTGA	3 cut(s)	319, 406, 577
Hpy166II	GTNNAC	7 cut(s)	294, 397, 411, 586, 594, 612, 621
Hpy188III	TCNNGA	2 cut(s)	278, 557
Hpy8I	GTNNAC	7 cut(s)	294, 397, 411, 586, 594, 612, 621
HpyAV	CCTTC	2 cut(s)	109, 532
HpyCH4V	TGCA	2 cut(s)	149, 352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 71, 113, 122
HpyF3I	CTNAG	2 cut(s)	234, 663
Hsp92II	CATG	6 cut(s)	115, 495, 565, 592, 662, 701
HspAI	GCGC	1 cut(s)	542
Ksp22I	TGATCA	3 cut(s)	309, 339, 669
Kzo9I	GATC	3 cut(s)	309, 339, 669
LpnPI	CCDG	7 cut(s)	71, 192, 224, 328, 530, 691, 701
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	3 cut(s)	311, 341, 671
MboI	GATC	3 cut(s)	309, 339, 669
MboII	GAAGA	2 cut(s)	85, 460
MluCI	AATT	5 cut(s)	144, 168, 363, 496, 691
MmeI	TCCRAC	2 cut(s)	33, 417
MnlI	CCTC	9 cut(s)	32, 35, 212, 433, 436, 444, 561, 564, 625
MseI	TTAA	2 cut(s)	366, 459
MspI	CCGG	3 cut(s)	58, 179, 678
MspR9I	CCNGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	4 cut(s)	62, 71, 113, 122
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	309, 339, 669
NlaIII	CATG	6 cut(s)	115, 495, 565, 592, 662, 701
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	487
NspI	RCATGY	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	728
PciI	ACATGT	1 cut(s)	588
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	131, 380
PflFI	GACNNNGTC	1 cut(s)	185
PinAI	ACCGGT	1 cut(s)	677
PkrI	GCNGC	3 cut(s)	41, 118, 522
PscI	ACATGT	1 cut(s)	588
PspFI	CCCAGC	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	366, 459
SatI	GCNGC	3 cut(s)	40, 117, 521
Sau3AI	GATC	3 cut(s)	309, 339, 669
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	728
Sse9I	AATT	5 cut(s)	144, 168, 363, 496, 691
SsiI	CCGC	5 cut(s)	39, 54, 72, 117, 305
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	56
TaqI	TCGA	3 cut(s)	162, 500, 728
TasI	AATT	5 cut(s)	144, 168, 363, 496, 691
TauI	GCSGC	2 cut(s)	42, 119
TfiI	GAWTC	2 cut(s)	131, 380
Tru1I	TTAA	2 cut(s)	366, 459
Tru9I	TTAA	2 cut(s)	366, 459
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	4 cut(s)	7, 180, 498, 647
Tth111I	GACNNNGTC	1 cut(s)	185
XapI	RAATTY	3 cut(s)	168, 496, 691
XceI	RCATGY	1 cut(s)	592
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.