Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8359919.1

Orthogroup ID

OG0013379

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 986

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8359919.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 950 bp

atgtactcgaaatgcgggaatcttcgtgatgcaagaaggttatttgataggatgccggagcataatactgtctctttaaattcgatgattgcaggttatgcacagcatgggattggaatggaatcattgtgccttttcgaacatatgcttcagaccgatgttgttccaacaagtataacctttatctctgtcctttctgcttgtgctcactctggaaaagttgaggagggtcagaagtacttcagtatgatgcaggagaagttcagaattgaaccagatgtaggacattattcatgcatgattgatcttttaggtcgagcaggcaaactgggtgaagctgagaggctcattgaggtgatgccattcagccctggcaccattggttgggctacattactcagtgcctgtagaacacatggaaatattgaactagcagttaaggcagccaatcagttgcttcagttggaaccttcaaatgctgttccatatgttatgctgtcgaatatgtattctagagctggcaaatgggatgaggtagcaaaaattagaacgttgatgcgagatagaggagtgaagaagaaaccaggtttaagttggattgaggtgaataagaggatacatgtttttgtggctgaagatagctcccacccaatgattaaagaaattcatgaatacttggaggagatgtcaatgaagattaagcgagctgggtatgtgcctgatgtaagatgggccttggtaaaggatgatgaaactgtcgaaggagagaaggagataatgttagggcatcacagtgaaaagttagcagttgcatttggtttgatctcgacaagagaaggggagcctatacttgtggtgaagaacctgaggatatgtggtgattgccacaatgcaatcaagtttatctctgccgttgctgggagggaaatcactgtgagggacgcccacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

316

Amino Acids

35.46

Weight (kDa)

6.9

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49710
fragaria_vesca	FvH4_1g18370
malus_domestica	MD15G1301900.v1.1
prunus_persica	Prupe.6G215200_v2.0.a1
pyrus_communis	pycom02g15520 pycom15g26470
rosa_chinensis	RchiOBHm_Chr2g0109081
rosa_laevigata	RLG00000017704
rosa_multiflora	Rmu_co8217570.1_g000001 Rmu_co8359919.1_g000001 Rmu_sc0003725.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134590
rosa_rugosa	Rorug02G0157000
rosa_samantha	Rh2AG207900 Rh2CG211300 Rh2DG214300
rosa_wichuraiana	Rw0G004070 Rw2G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	384
AciI	CCGC	1 cut(s)	15
AclI	AACGTT	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	79, 663
AcuI	CTGAAG	4 cut(s)	134, 226, 443, 654
AcyI	GRCGYC	1 cut(s)	942
AfaI	GTAC	2 cut(s)	5, 239
AfiI	CCNNNNNNNGG	3 cut(s)	281, 384, 918
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	3 cut(s)	272, 428, 474
AjnI	CCWGG	2 cut(s)	370, 583
AluBI	AGCT	4 cut(s)	338, 518, 642, 707
AluI	AGCT	4 cut(s)	338, 518, 642, 707
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	405
AoxI	GGCC	1 cut(s)	732
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	79, 663
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	5 cut(s)	344, 367, 616, 868, 890
AsuII	TTCGAA	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	723
BceAI	ACGGC	1 cut(s)	896
BciT130I	CCWGG	2 cut(s)	372, 585
BciVI	GTATCC	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	431, 513
BfmI	CTRYAG	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	609
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	372, 585
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	3 cut(s)	376, 468, 843
BmrFI	CCNGG	2 cut(s)	372, 585
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	6 cut(s)	19, 42, 240, 348, 546, 796
BmuI	ACTGGG	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	942
BsaJI	CCNNGG	2 cut(s)	370, 735
BsaXI	ACNNNNNCTCC	4 cut(s)	671, 701, 764, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 384, 918
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	866
BseBI	CCWGG	2 cut(s)	372, 585
BseDI	CCNNGG	2 cut(s)	370, 735
BseGI	GGATG	3 cut(s)	57, 535, 751
BseLI	CCNNNNNNNGG	3 cut(s)	281, 384, 918
BseMII	CTCAG	3 cut(s)	330, 412, 857
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	3 cut(s)	239, 582, 695
BseXI	GCAGC	1 cut(s)	455
BseYI	CCCAGC	2 cut(s)	707, 917
BshFI	GGCC	1 cut(s)	734
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	281, 384, 918
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	734
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	304, 822
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	734
BspCNI	CTCAG	3 cut(s)	331, 411, 858
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	3 cut(s)	376, 468, 843
BspMI	ACCTGC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	370, 735
BssMI	GATC	2 cut(s)	304, 822
BssNI	GRCGYC	1 cut(s)	942
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	372, 585
Bst4CI	ACNGT	4 cut(s)	70, 757, 794, 934
BstACI	GRCGYC	1 cut(s)	942
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	322, 520, 705
BstDEI	CTNAG	3 cut(s)	339, 398, 866
BstF5I	GGATG	3 cut(s)	57, 535, 751
BstKTI	GATC	2 cut(s)	307, 825
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	304, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 440
BstNI	CCWGG	2 cut(s)	372, 585
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	2 cut(s)	370, 583
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	455
Bsu36I	CCTNAGG	1 cut(s)	866
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	734
BtsCI	GGATG	3 cut(s)	57, 535, 751
BtsIMutI	CAGTG	3 cut(s)	406, 799, 930
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	322, 520, 705
CaiI	CAGNNNCTG	1 cut(s)	405
CciI	TCATGA	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	732
CsiI	ACCWGGT	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	4, 238
CviAII	CATG	6 cut(s)	107, 294, 298, 416, 620, 668
CviQI	GTAC	2 cut(s)	4, 238
DdeI	CTNAG	3 cut(s)	339, 398, 866
DpnI	GATC	2 cut(s)	306, 824
DpnII	GATC	2 cut(s)	304, 822
DraI	TTTAAA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	735
Eco57I	CTGAAG	4 cut(s)	134, 226, 443, 654
Eco81I	CCTNAGG	1 cut(s)	866
EcoRII	CCWGG	2 cut(s)	370, 583
EcoT14I	CCWWGG	1 cut(s)	735
EcoT22I	ATGCAT	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	6 cut(s)	110, 297, 301, 419, 623, 671
FatI	CATG	6 cut(s)	106, 293, 297, 415, 619, 667
FauI	CCCGC	1 cut(s)	8
FauNDI	CATATG	2 cut(s)	144, 487
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	3 cut(s)	64, 542, 758
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	2 cut(s)	431, 513
GluI	GCNGC	1 cut(s)	444
GsaI	CCCAGC	2 cut(s)	711, 921
HaeIII	GGCC	1 cut(s)	734
HapII	CCGG	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	942
Hin1II	CATG	6 cut(s)	110, 297, 301, 419, 623, 671
HinfI	GANTC	2 cut(s)	19, 122
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	5 cut(s)	344, 367, 616, 868, 890
Hpy188I	TCNGA	3 cut(s)	153, 234, 266
Hpy188III	TCNNGA	5 cut(s)	26, 213, 513, 668, 826
HpyAV	CCTTC	5 cut(s)	30, 480, 755, 763, 830
HpyCH4III	ACNGT	4 cut(s)	70, 757, 794, 934
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	7 cut(s)	32, 92, 101, 253, 297, 812, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 440
HpyF3I	CTNAG	3 cut(s)	339, 398, 866
HpySE526I	ACGT	1 cut(s)	551
Hsp92I	GRCGYC	1 cut(s)	942
Hsp92II	CATG	6 cut(s)	110, 297, 301, 419, 623, 671
Kzo9I	GATC	2 cut(s)	304, 822
LmnI	GCTCC	3 cut(s)	58, 647, 841
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	6 cut(s)	19, 42, 240, 348, 546, 796
MabI	ACCWGGT	1 cut(s)	583
MaeI	CTAG	2 cut(s)	431, 513
MaeII	ACGT	1 cut(s)	551
MalI	GATC	2 cut(s)	306, 824
MboI	GATC	2 cut(s)	304, 822
MboII	GAAGA	6 cut(s)	14, 586, 589, 647, 706, 871
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	4 cut(s)	79, 267, 543, 663
MmeI	TCCRAC	3 cut(s)	191, 444, 575
Mph1103I	ATGCAT	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	5 cut(s)	77, 438, 590, 657, 699
MslI	CAYNNNNRTG	2 cut(s)	353, 792
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	372, 585
MvaI	CCWGG	2 cut(s)	372, 585
MwoI	GCNNNNNNNGC	2 cut(s)	98, 440
NdeI	CATATG	2 cut(s)	144, 487
NdeII	GATC	2 cut(s)	304, 822
NlaIII	CATG	6 cut(s)	110, 297, 301, 419, 623, 671
NlaIV	GGNNCC	3 cut(s)	376, 468, 843
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	623
NspV	TTCGAA	1 cut(s)	138
PagI	TCATGA	1 cut(s)	667
PciI	ACATGT	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	19, 122
PflMI	CCANNNNNTGG	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	445
PscI	ACATGT	1 cut(s)	619
Psp1406I	AACGTT	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	370, 583
PspFI	CCCAGC	2 cut(s)	707, 917
PspGI	CCWGG	2 cut(s)	370, 583
PspN4I	GGNNCC	3 cut(s)	376, 468, 843
PspPI	GGNCC	1 cut(s)	732
PstNI	CAGNNNCTG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	5, 239
RsaNI	GTAC	2 cut(s)	4, 238
RseI	CAYNNNNRTG	2 cut(s)	353, 792
SaqAI	TTAA	5 cut(s)	77, 438, 590, 657, 699
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	304, 822
Sau96I	GGNCC	1 cut(s)	732
ScaI	AGTACT	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	372, 585
SduI	GDGCHC	1 cut(s)	208
SexAI	ACCWGGT	1 cut(s)	583
SfaNI	GCATC	6 cut(s)	19, 42, 240, 348, 546, 796
SfcI	CTRYAG	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	353, 792
Sse9I	AATT	4 cut(s)	79, 267, 543, 663
SsiI	CCGC	1 cut(s)	15
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	2 cut(s)	431, 513
StyD4I	CCNGG	2 cut(s)	370, 583
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	4 cut(s)	70, 757, 794, 934
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	7 cut(s)	8, 83, 138, 316, 500, 759, 827
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	4 cut(s)	79, 267, 543, 663
TatI	WGTACW	2 cut(s)	3, 237
TfiI	GAWTC	2 cut(s)	19, 122
Tru1I	TTAA	5 cut(s)	77, 438, 590, 657, 699
Tru9I	TTAA	5 cut(s)	77, 438, 590, 657, 699
TscAI	CASTG	3 cut(s)	406, 799, 937
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	5 cut(s)	282, 656, 684, 707, 765
TspRI	CASTG	3 cut(s)	406, 799, 937
Van91I	CCANNNNNTGG	1 cut(s)	384
XapI	RAATTY	2 cut(s)	79, 663
XbaI	TCTAGA	1 cut(s)	512
XceI	RCATGY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	2 cut(s)	431, 513
ZrmI	AGTACT	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.