Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00159

Orthogroup ID

OG0013379

Physical Location & Seq

Genomic Coordinates Reverse (-)

28030 .. 30189

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGAACCGAATCCAATGGACCTTGCAAACCTTCCGCAACGTTTTAAAGACATGCATAGCCGAAAGAGACCTCTTCACAGGCAAAGCCCTCCATGCACTCTACTTCAAGTCCCTCCTTCCTCCGTCCACCTACATTTCCAACCACTTCATCCTCCTCTACTCCAAATGCGGCCGTCTCATCTCCGCCCGGAACGCCTTTTCCGCCACCCAAGACCCCAATGTCTTCTCCTTCAACGCCATCATGGCCGCCTACGCCAAAGAATCGCAGACCCGAACTGCACACAACTTGTTCGATGAAATTCCCCAACCGGACTTGGTCTCTTACAACACCCTCATTTCGGCTTATGCTGAAAAGGGAGAGACTGAGCAGGCATTGGGGTTGTTTAGTGGGATGAGAGAAGTGGGTCTTGATGCTGATGGGTTTACCATCTCGGCGGTGATCACGGGTTGTTGTGATGATGTTGGTTTGATTAGGGAGTTGCATTCGTTGATAGTTAAAGGTGGGTTTGATTCGTATGTTTCGGTGAACAATGCGTTATTAACTTACTATAGTAAGAATGGGCTGTTGGAGGAGGCGAAGAGGGTGTTTAATGTGATGGGAGAAATGAGAGATGAAGTGACATGGAATTCGATGATTGTGGCGTATGGGCAGCACCGACAAGGGTTGAAGGCGCTGGGGTTGTTTCAAGACATGGTGAGGAGGGGGTTTGATGTGGACATGTTTACATTGGCTAGTGTGTTGACTGCGTTTACTTGCGTGCAGGACTTGTTGGGTGGGCTTCAGTTTCATGCTAAGTTGATCAAAACCGGTTTCCACCAGAATTCTCATGTTGGGAGTGGGCTGATTGATTTGTATTCAAAGTGTGCTGGTGGCATGTCAGAGTGCTGGAAAGTATTTGAAGAGATTCCTGCTCCGGATTTGGTTCTCTGGAACACAATGATTTCTGGATACTCTCAAAATGACGAGTTCTCTGAAGATGCTATTGATTGTTTGCGGCAGATGCAACGTGTTGGTTACTACCCTGATGATTGCAGCTTGCTGTCTGGGAAGCAGATACATGCCTTGGCAATCAAATCTGAGATCCCTTCGAATATAATTTCAGTGGATAATGCTCTAGTTGCAATGTACTCGAAATGTGGGAATCTTCGTGATGCAAGAAGGTTATTTGATAGGATGCCGGAGCATAATACTGTCTCTTTAAATTCGATGATTGCAGGTTATGCACAGCATGGGATTGGAATGGAATCATTGTGCCTTTTCGAACATATGCTTCAGACCGATGTTGTTCCAACAAGTATAACCTTTATCTCTGTCCTTTCTGCTTGTGCTCACTCTGGAAAAGTTGAGGAGGGTCAGAAGTACTTCAGTATGATGCAGGAGAAGTTCAGAATCGAACCAGATGTAGGACATTATTCATGCATGATTGATCTTTTAGGTCGAGCAGGCAAACTGGGTGAAGCTGAGAGGCTCATTGAGGTGATGCCATTCAGCCCTGGCACCATTGGTTGGGCTACCTTACTCAGTGCCTGTAGAACACATGGAAATATTGAACTAGCAGTTAAGGCAGCCAATCAATTGCTTCAGTTGGAACCTTCAAATGCTGTTCCATATGTTATGCTGTCGAATATGTATTCTAGAGCTGGCAAATGGGATGAGGTAGCAAAAATTAGAACGTTGATGCGAGATAGAGGAGTGAAGAAGAAACCAGGTTTAAGTTGGATTGAGGTGAATAAGAGGATACATGTTTTTGTGGCTGAAGATAGCTCCCACCCAATGATTAAAGAAATTCATGAATACTTGGAGGAGATGTCAATGAAGATTAAGCGAGCTGGGTATGTGCCTGATGTAAGATGGGCCTTGGTAAAGGATGATGAAACTGTCGAAGGAGAGAAGGAGATAATGTTAGGGCATCACAGTGAAAAGTTAGCAGTTGCATTTGGTTTGATCTCGACAAGAGAAGGGGATTTATCTCTGCTATTTGGGAGGGAAATCACTGTGAGGGACGCCCACAGGTTTCATTGCTTCAAGGAAGGGCAGTGCTCTTGTGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

686

Amino Acids

76.82

Weight (kDa)

6.02

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	102 - 132	2.9e-06	PPR repeat
PPR_2	PF13041	103 - 152	1.7e-12	PPR repeat family
PPR	PF01535	106 - 135	8.5e-07	PPR repeat
PPR_2	PF13041	204 - 250	3.6e-09	PPR repeat family
PPR	PF01535	206 - 236	7.1e-08	PPR repeat
PPR_2	PF13041	305 - 344	4.6e-06	PPR repeat family
PPR_2	PF13041	396 - 444	1.1e-06	PPR repeat family
PPR_1	PF12854	464 - 494	6.8e-06	PPR repeat
E_motif	PF20431	513 - 575	4.6e-22	E motif
Eplus_motif	PF20430	580 - 607	4.8e-06	E+ motif
DYW_deaminase	PF14432	611 - 654	2.3e-06	DYW family of nucleic acid deaminases
DYW_deaminase	PF14432	657 - 686	6e-09	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49710
fragaria_vesca	FvH4_1g18370
malus_domestica	MD15G1301900.v1.1
prunus_persica	Prupe.6G215200_v2.0.a1
pyrus_communis	pycom02g15520 pycom15g26470
rosa_chinensis	RchiOBHm_Chr2g0109081
rosa_laevigata	RLG00000017704
rosa_multiflora	Rmu_co8217570.1_g000001 Rmu_co8359919.1_g000001 Rmu_sc0003725.1_g000003
rosa_roxburghii	Rroxscaffold_2G00134590
rosa_rugosa	Rorug02G0157000
rosa_samantha	Rh2AG207900 Rh2CG211300 Rh2DG214300
rosa_wichuraiana	Rw0G004070 Rw2G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	1205
AccB1I	GGYRCC	1 cut(s)	1496
AccB7I	CCANNNNNTGG	1 cut(s)	1506
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	7 cut(s)	34, 168, 183, 201, 246, 434, 994
AclI	AACGTT	2 cut(s)	39, 1673
AclWI	GGATC	1 cut(s)	1075
AcoI	YGGCCR	2 cut(s)	169, 243
AcsI	RAATTY	5 cut(s)	297, 625, 820, 1201, 1785
AcuI	CTGAAG	6 cut(s)	764, 993, 1256, 1348, 1565, 1776
AcyI	GRCGYC	1 cut(s)	2004
AfaI	GTAC	2 cut(s)	1127, 1361
AfiI	CCNNNNNNNGG	3 cut(s)	337, 1403, 1506
AflIII	ACRYGT	3 cut(s)	717, 1006, 1741
AgeI	ACCGGT	1 cut(s)	806
AgsI	TTSAA	9 cut(s)	106, 232, 667, 686, 858, 899, 1550, 1596, 2026
AjnI	CCWGG	2 cut(s)	1492, 1705
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	5 cut(s)	1035, 1460, 1640, 1764, 1829
AluI	AGCT	5 cut(s)	1035, 1460, 1640, 1764, 1829
Alw21I	GWGCWC	2 cut(s)	1330, 2042
Alw26I	GTCTC	5 cut(s)	60, 179, 322, 353, 1198
AlwI	GGATC	1 cut(s)	1075
AlwNI	CAGNNNCTG	1 cut(s)	1527
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	3 cut(s)	169, 243, 1854
ApeKI	GCWGC	3 cut(s)	649, 1032, 1565
ApoI	RAATTY	5 cut(s)	297, 625, 820, 1201, 1785
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
AsiGI	ACCGGT	1 cut(s)	806
Asp700I	GAANNNNTTC	2 cut(s)	903, 1361
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	18, 1854
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	6 cut(s)	448, 535, 706, 1466, 1489, 1738
AsuII	TTCGAA	2 cut(s)	1088, 1260
AvaII	GGWCC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	1496
BbsI	GAAGAC	1 cut(s)	214
Bbv12I	GWGCWC	2 cut(s)	1330, 2042
BbvI	GCAGC	3 cut(s)	661, 1044, 1577
BccI	CCATC	5 cut(s)	245, 410, 434, 589, 1845
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	1110, 1144
BciT130I	CCWGG	2 cut(s)	1494, 1707
BciVI	GTATCC	2 cut(s)	941, 1731
BclI	TGATCA	2 cut(s)	438, 798
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	5 cut(s)	60, 179, 322, 353, 1198
BfaI	CTAG	4 cut(s)	732, 1115, 1553, 1635
BfmI	CTRYAG	2 cut(s)	547, 1528
BfoI	RGCGCY	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	1205
BfuI	GTATCC	2 cut(s)	941, 1731
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	6 cut(s)	169, 246, 650, 995, 1033, 1566
BlsI	GCNGC	6 cut(s)	170, 247, 651, 996, 1034, 1567
BmcAI	AGTACT	1 cut(s)	1361
Bme1390I	CCNGG	3 cut(s)	187, 1494, 1707
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	18, 1854
BmiI	GGNNCC	2 cut(s)	1498, 1590
BmrFI	CCNGG	3 cut(s)	187, 1494, 1707
BmrI	ACTGGG	1 cut(s)	1460
BmsI	GCATC	9 cut(s)	400, 967, 990, 1141, 1164, 1362, 1470, 1668, 1918
BmuI	ACTGGG	1 cut(s)	1460
BpiI	GAAGAC	1 cut(s)	214
Bpu14I	TTCGAA	2 cut(s)	1088, 1260
BpuMI	CCSGG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	2004
BsaI	GGTCTC	2 cut(s)	60, 322
BsaJI	CCNNGG	3 cut(s)	1062, 1492, 1857
BsaWI	WCCGGW	3 cut(s)	307, 806, 913
BsaXI	ACNNNNNCTCC	4 cut(s)	1793, 1823, 1886, 1916
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 1403, 1506
Bse118I	RCCGGY	1 cut(s)	806
Bse1I	ACTGG	1 cut(s)	1455
Bse3DI	GCAATG	2 cut(s)	1128, 2017
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	2 cut(s)	1494, 1707
BseDI	CCNNGG	3 cut(s)	1062, 1492, 1857
BseGI	GGATG	5 cut(s)	147, 396, 1179, 1657, 1873
BseLI	CCNNNNNNNGG	3 cut(s)	337, 1403, 1506
BseMI	GCAATG	2 cut(s)	1128, 2017
BseMII	CTCAG	4 cut(s)	354, 1068, 1452, 1534
BseNI	ACTGG	1 cut(s)	1455
BseRI	GAGGAG	6 cut(s)	143, 584, 712, 1361, 1704, 1817
BseX3I	CGGCCG	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	661, 1044, 1577
BseYI	CCCAGC	2 cut(s)	673, 1829
BsgI	GTGCAG	2 cut(s)	261, 779
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	3 cut(s)	171, 245, 1856
BshNI	GGYRCC	1 cut(s)	1496
BshTI	ACCGGT	1 cut(s)	806
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	2 cut(s)	1330, 2042
BsiSI	CCGG	5 cut(s)	187, 308, 807, 914, 1178
BslFI	GGGAC	2 cut(s)	94, 2015
BslI	CCNNNNNNNGG	3 cut(s)	337, 1403, 1506
BsmAI	GTCTC	5 cut(s)	60, 179, 322, 353, 1198
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	94, 2015
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	171, 245, 1856
Bso31I	GGTCTC	2 cut(s)	60, 322
Bsp119I	TTCGAA	2 cut(s)	1088, 1260
Bsp1286I	GDGCHC	2 cut(s)	1330, 2042
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
BspACI	CCGC	7 cut(s)	34, 168, 183, 201, 246, 434, 994
BspANI	GGCC	3 cut(s)	171, 245, 1856
BspCNI	CTCAG	4 cut(s)	355, 1069, 1453, 1533
BspEI	TCCGGA	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	1789
BspLI	GGNNCC	2 cut(s)	1498, 1590
BspMI	ACCTGC	1 cut(s)	1205
BspPI	GGATC	1 cut(s)	1075
BspT104I	TTCGAA	2 cut(s)	1088, 1260
BspT107I	GGYRCC	1 cut(s)	1496
BspTNI	GGTCTC	2 cut(s)	60, 322
BsrDI	GCAATG	2 cut(s)	1128, 2017
BsrFI	RCCGGY	1 cut(s)	806
BsrI	ACTGG	1 cut(s)	1455
BssAI	RCCGGY	1 cut(s)	806
BssECI	CCNNGG	3 cut(s)	1062, 1492, 1857
BssMI	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
BssNI	GRCGYC	1 cut(s)	2004
BssT1I	CCWWGG	2 cut(s)	1062, 1857
Bst2UI	CCWGG	2 cut(s)	1494, 1707
Bst4CI	ACNGT	4 cut(s)	1192, 1879, 1916, 1996
Bst6I	CTCTTC	3 cut(s)	77, 572, 894
BstACI	GRCGYC	1 cut(s)	2004
BstAPI	GCANNNNNTGC	1 cut(s)	1220
BstBI	TTCGAA	2 cut(s)	1088, 1260
BstC8I	GCNNGC	6 cut(s)	369, 758, 1037, 1444, 1642, 1827
BstDEI	CTNAG	5 cut(s)	363, 792, 1077, 1461, 1520
BstF5I	GGATG	5 cut(s)	147, 396, 1179, 1657, 1873
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	5 cut(s)	441, 801, 1083, 1429, 1947
BstMAI	GTCTC	5 cut(s)	60, 179, 322, 353, 1198
BstMBI	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 191, 200, 242, 251, 1000, 1118, 1220, 1562
BstNI	CCWGG	2 cut(s)	1494, 1707
BstNSI	RCATGY	5 cut(s)	54, 721, 877, 1061, 1745
BstSCI	CCNGG	3 cut(s)	185, 1492, 1705
BstSFI	CTRYAG	2 cut(s)	547, 1528
BstV1I	GCAGC	3 cut(s)	661, 1044, 1577
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	1080
BstYI	RGATCY	1 cut(s)	1080
BstZI	CGGCCG	1 cut(s)	169
BsuI	GTATCC	2 cut(s)	941, 1731
BsuRI	GGCC	3 cut(s)	171, 245, 1856
BtsCI	GGATG	5 cut(s)	147, 396, 1179, 1657, 1873
BtsI	GCAGTG	1 cut(s)	2042
BtsIMutI	CAGTG	5 cut(s)	1107, 1528, 1921, 1992, 2042
BveI	ACCTGC	1 cut(s)	1205
Cac8I	GCNNGC	6 cut(s)	369, 758, 1037, 1444, 1642, 1827
CaiI	CAGNNNCTG	1 cut(s)	1527
CciI	TCATGA	1 cut(s)	1789
CfoI	GCGC	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	806
Cfr13I	GGNCC	2 cut(s)	18, 1854
CseI	GACGC	1 cut(s)	2012
CsiI	ACCWGGT	1 cut(s)	1705
Csp6I	GTAC	2 cut(s)	1126, 1360
CspAI	ACCGGT	1 cut(s)	806
CviQI	GTAC	2 cut(s)	1126, 1360
DdeI	CTNAG	5 cut(s)	363, 792, 1077, 1461, 1520
DpnI	GATC	5 cut(s)	440, 800, 1082, 1428, 1946
DpnII	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
DraI	TTTAAA	2 cut(s)	45, 1200
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	169, 243
EagI	CGGCCG	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	77, 572, 894
EarI	CTCTTC	3 cut(s)	77, 572, 894
EciI	GGCGGA	2 cut(s)	172, 190
EclXI	CGGCCG	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	1062, 1857
Eco31I	GGTCTC	2 cut(s)	60, 322
Eco47I	GGWCC	1 cut(s)	18
Eco52I	CGGCCG	1 cut(s)	169
Eco57I	CTGAAG	6 cut(s)	764, 993, 1256, 1348, 1565, 1776
EcoRI	GAATTC	2 cut(s)	625, 820
EcoRII	CCWGG	2 cut(s)	1492, 1705
EcoT14I	CCWWGG	2 cut(s)	1062, 1857
EcoT22I	ATGCAT	2 cut(s)	56, 1421
ErhI	CCWWGG	2 cut(s)	1062, 1857
Esp3I	CGTCTC	1 cut(s)	179
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	2 cut(s)	94, 2015
FauNDI	CATATG	2 cut(s)	1266, 1609
FbaI	TGATCA	2 cut(s)	438, 798
Fnu4HI	GCNGC	6 cut(s)	169, 246, 650, 995, 1033, 1566
FokI	GGATG	5 cut(s)	134, 403, 1186, 1664, 1880
Fsp4HI	GCNGC	6 cut(s)	169, 246, 650, 995, 1033, 1566
FspBI	CTAG	4 cut(s)	732, 1115, 1553, 1635
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	6 cut(s)	169, 246, 650, 995, 1033, 1566
GsaI	CCCAGC	2 cut(s)	677, 1833
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	3 cut(s)	171, 245, 1856
HapII	CCGG	5 cut(s)	187, 308, 807, 914, 1178
HgaI	GACGC	1 cut(s)	2012
HhaI	GCGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	2004
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HinfI	GANTC	7 cut(s)	9, 260, 509, 904, 1141, 1244, 1389
HpaII	CCGG	5 cut(s)	187, 308, 807, 914, 1178
HphI	GGTGA	6 cut(s)	448, 535, 706, 1466, 1489, 1738
Hpy166II	GTNNAC	7 cut(s)	126, 423, 526, 715, 723, 741, 750
Hpy188I	TCNGA	6 cut(s)	880, 973, 1078, 1275, 1356, 1388
Hpy8I	GTNNAC	7 cut(s)	126, 423, 526, 715, 723, 741, 750
HpyCH4III	ACNGT	4 cut(s)	1192, 1879, 1916, 1996
HpyCH4IV	ACGT	3 cut(s)	39, 1006, 1673
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 191, 200, 242, 251, 1000, 1118, 1220, 1562
HpyF3I	CTNAG	5 cut(s)	363, 792, 1077, 1461, 1520
HpySE526I	ACGT	3 cut(s)	39, 1006, 1673
Hsp92I	GRCGYC	1 cut(s)	2004
HspAI	GCGC	1 cut(s)	671
Kpn2I	TCCGGA	1 cut(s)	913
Ksp22I	TGATCA	2 cut(s)	438, 798
Kzo9I	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
LmnI	GCTCC	3 cut(s)	916, 1180, 1769
Lsp1109I	GCAGC	3 cut(s)	661, 1044, 1577
LweI	GCATC	9 cut(s)	400, 967, 990, 1141, 1164, 1362, 1470, 1668, 1918
MabI	ACCWGGT	1 cut(s)	1705
MaeI	CTAG	4 cut(s)	732, 1115, 1553, 1635
MaeII	ACGT	3 cut(s)	39, 1006, 1673
MaeIII	GTNAC	2 cut(s)	616, 1013
MalI	GATC	5 cut(s)	440, 800, 1082, 1428, 1946
MboI	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
MfeI	CAATTG	1 cut(s)	1574
MflI	RGATCY	1 cut(s)	1080
MhlI	GDGCHC	2 cut(s)	1330, 2042
MluCI	AATT	8 cut(s)	297, 625, 820, 1095, 1201, 1574, 1665, 1785
MmeI	TCCRAC	5 cut(s)	162, 546, 1313, 1566, 1697
Mph1103I	ATGCAT	2 cut(s)	56, 1421
MroI	TCCGGA	1 cut(s)	913
MroXI	GAANNNNTTC	2 cut(s)	903, 1361
MseI	TTAA	9 cut(s)	44, 495, 539, 588, 1199, 1560, 1712, 1779, 1821
MslI	CAYNNNNRTG	2 cut(s)	1475, 1914
MspI	CCGG	5 cut(s)	187, 308, 807, 914, 1178
MspR9I	CCNGG	3 cut(s)	187, 1494, 1707
MunI	CAATTG	1 cut(s)	1574
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	1494, 1707
MwoI	GCNNNNNNNGC	9 cut(s)	92, 191, 200, 242, 251, 1000, 1118, 1220, 1562
NciI	CCSGG	1 cut(s)	187
NdeI	CATATG	2 cut(s)	1266, 1609
NdeII	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
NlaIV	GGNNCC	2 cut(s)	1498, 1590
NmeAIII	GCCGAG	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	616
NsiI	ATGCAT	2 cut(s)	56, 1421
NspI	RCATGY	5 cut(s)	54, 721, 877, 1061, 1745
NspV	TTCGAA	2 cut(s)	1088, 1260
PagI	TCATGA	1 cut(s)	1789
PciI	ACATGT	2 cut(s)	717, 1741
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	903, 1361
PfeI	GAWTC	7 cut(s)	9, 260, 509, 904, 1141, 1244, 1389
PflFI	GACNNNGTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	1506
PinAI	ACCGGT	1 cut(s)	806
PkrI	GCNGC	6 cut(s)	170, 247, 651, 996, 1034, 1567
PscI	ACATGT	2 cut(s)	717, 1741
Psp1406I	AACGTT	2 cut(s)	39, 1673
Psp6I	CCWGG	2 cut(s)	1492, 1705
PspFI	CCCAGC	2 cut(s)	673, 1829
PspGI	CCWGG	2 cut(s)	1492, 1705
PspN4I	GGNNCC	2 cut(s)	1498, 1590
PspPI	GGNCC	2 cut(s)	18, 1854
PstNI	CAGNNNCTG	1 cut(s)	1527
PsuI	RGATCY	1 cut(s)	1080
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	2 cut(s)	1127, 1361
RsaNI	GTAC	2 cut(s)	1126, 1360
RseI	CAYNNNNRTG	2 cut(s)	1475, 1914
SaqAI	TTAA	9 cut(s)	44, 495, 539, 588, 1199, 1560, 1712, 1779, 1821
SatI	GCNGC	6 cut(s)	169, 246, 650, 995, 1033, 1566
Sau3AI	GATC	5 cut(s)	438, 798, 1080, 1426, 1944
Sau96I	GGNCC	2 cut(s)	18, 1854
ScaI	AGTACT	1 cut(s)	1361
ScrFI	CCNGG	3 cut(s)	187, 1494, 1707
SduI	GDGCHC	2 cut(s)	1330, 2042
SexAI	ACCWGGT	1 cut(s)	1705
SfaNI	GCATC	9 cut(s)	400, 967, 990, 1141, 1164, 1362, 1470, 1668, 1918
SfcI	CTRYAG	2 cut(s)	547, 1528
SfuI	TTCGAA	2 cut(s)	1088, 1260
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	2 cut(s)	1475, 1914
Sse9I	AATT	8 cut(s)	297, 625, 820, 1095, 1201, 1574, 1665, 1785
SsiI	CCGC	7 cut(s)	34, 168, 183, 201, 246, 434, 994
SspI	AATATT	1 cut(s)	1546
SspMI	CTAG	4 cut(s)	732, 1115, 1553, 1635
StyD4I	CCNGG	3 cut(s)	185, 1492, 1705
StyI	CCWWGG	2 cut(s)	1062, 1857
TaaI	ACNGT	4 cut(s)	1192, 1879, 1916, 1996
TaiI	ACGT	3 cut(s)	42, 1009, 1676
TaqII	GACCGA	1 cut(s)	1292
TasI	AATT	8 cut(s)	297, 625, 820, 1095, 1201, 1574, 1665, 1785
TatI	WGTACW	2 cut(s)	1125, 1359
TauI	GCSGC	3 cut(s)	171, 248, 997
TfiI	GAWTC	7 cut(s)	9, 260, 509, 904, 1141, 1244, 1389
Tru1I	TTAA	9 cut(s)	44, 495, 539, 588, 1199, 1560, 1712, 1779, 1821
Tru9I	TTAA	9 cut(s)	44, 495, 539, 588, 1199, 1560, 1712, 1779, 1821
TscAI	CASTG	5 cut(s)	1107, 1528, 1921, 1999, 2042
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	3 cut(s)	649, 1032, 1565
Tsp45I	GTSAC	1 cut(s)	616
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	5 cut(s)	1107, 1528, 1921, 1999, 2042
Tth111I	GACNNNGTC	1 cut(s)	314
Van91I	CCANNNNNTGG	1 cut(s)	1506
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	5 cut(s)	297, 625, 820, 1201, 1785
XbaI	TCTAGA	1 cut(s)	1634
XceI	RCATGY	5 cut(s)	54, 721, 877, 1061, 1745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1713
XmnI	GAANNNNTTC	2 cut(s)	903, 1361
XspI	CTAG	4 cut(s)	732, 1115, 1553, 1635
ZrmI	AGTACT	1 cut(s)	1361
Zsp2I	ATGCAT	2 cut(s)	56, 1421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.