Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007995

Physical Location & Seq

Genomic Coordinates Forward (+)

33938174 .. 33938723

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1322400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCAGACCACGGTATCACCTCCCTCATCCTCTCTCATCCACCTTCCGATCACTCCTACTTGATCCTCACCATCCAAGACGACACCGATACCGATAGCCACCATAACGGCACCCACACTCATCAGAGCACCAGCGCCCACTACCACCACTCTCGCAACCCTTTTACGTTTCTCAGGTCTTATGGGTTCACCGTGCCCGTTTCCACCACCGTTGACCCGTTTCAGAACCACACCCTGGAGATTACGGGTGTTTATGAGTGGTTAAAGATCAAAATTTGCCTGCTCGTCGCCCTGGCTCTGCTGGTGCTGTTTGGGGGCGTCGGGTGGAAGGATAAGAAGAACCCTATGGCTAGGTGGAGGACCAGGATTATGTGGATCACTAAGGTCTGTACTCGATGCATTCTCTTCGCTTTTGGCTACCACTGGATAAGACGGAAAGGAAAACCAGCTCCTAGAGACATTGCACCAACAGTCGTTTCAAACCATAGCAATGCAGATGATATATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0050200 GO:0071617 GO:0071618 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

170

Amino Acids

19.25

Weight (kDa)

8.96

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45670 AT2G45670
fragaria_vesca	FvH4_7g12710 FvH4_7g12710 FvH4_7g12710
malus_domestica	MD02G1197300.v1.1 MD07G1123700.v1.1 MD15G1322400.v1.1
prunus_persica	Prupe.2G151300_v2.0.a1 Prupe.2G151300_v2.0.a1 Prupe.2G151300_v2.0.a1
pyrus_communis	pycom02g16080 pycom07g11640
rosa_chinensis	RchiOBHm_Chr1g0351731
rosa_laevigata	RLG00000028387
rosa_multiflora	Rmu_sc0001183.1_g000001 Rmu_sc0001933.1_g000017
rosa_roxburghii	Rroxscaffold_4G00303590
rosa_rugosa	Rorug01G0221000
rosa_samantha	Rh1AG234900 Rh1BG205500 Rh1CG219600 Rh1DG232500
rosa_wichuraiana	Rw1G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	235
AclWI	GGATC	2 cut(s)	58, 383
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	480
AjnI	CCWGG	3 cut(s)	234, 291, 362
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	58, 383
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	10, 61, 181
AvaII	GGWCC	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	198
BaeI	ACNNNNGTAYC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	131
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	3 cut(s)	236, 293, 364
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	2 cut(s)	351, 453
BfoI	RGCGCY	1 cut(s)	138
Bme1390I	CCNGG	3 cut(s)	236, 293, 364
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	3 cut(s)	236, 293, 364
BmsI	GCATC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	10, 234, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	459, 496
BseBI	CCWGG	3 cut(s)	236, 293, 364
BseDI	CCNNGG	3 cut(s)	10, 234, 291
BseGI	GGATG	3 cut(s)	27, 37, 72
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	2 cut(s)	459, 496
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	131, 198
Bsp143I	GATC	4 cut(s)	49, 63, 267, 375
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	58, 383
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	459, 496
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	3 cut(s)	10, 234, 291
BssMI	GATC	4 cut(s)	49, 63, 267, 375
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	236, 293, 364
Bst4CI	ACNGT	4 cut(s)	14, 193, 211, 472
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	173, 381
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	27, 37, 72
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	4 cut(s)	52, 66, 270, 378
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	4 cut(s)	49, 63, 267, 375
BstNI	CCWGG	3 cut(s)	236, 293, 364
BstSCI	CCNGG	3 cut(s)	234, 291, 362
BstSLI	GKGCMC	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	27, 37, 72
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	281
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	360
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	390
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviJI	RGCY	5 cut(s)	99, 296, 350, 417, 449
CviKI_1	RGCY	5 cut(s)	99, 296, 350, 417, 449
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	173, 381
DpnI	GATC	4 cut(s)	51, 65, 269, 377
DpnII	GATC	4 cut(s)	49, 63, 267, 375
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	360
EcoRII	CCWGG	3 cut(s)	234, 291, 362
EcoT22I	ATGCAT	1 cut(s)	401
FaiI	YATR	8 cut(s)	105, 183, 255, 347, 371, 486, 503, 505
FokI	GGATG	3 cut(s)	14, 24, 59
FspBI	CTAG	2 cut(s)	351, 453
GlaI	GCGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	1 cut(s)	138
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HphI	GGTGA	3 cut(s)	10, 61, 181
Hpy166II	GTNNAC	2 cut(s)	189, 214
Hpy188I	TCNGA	3 cut(s)	49, 126, 225
Hpy8I	GTNNAC	2 cut(s)	189, 214
Hpy99I	CGWCG	2 cut(s)	290, 323
HpyAV	CCTTC	2 cut(s)	54, 322
HpyCH4III	ACNGT	4 cut(s)	14, 193, 211, 472
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	399, 464, 494
HpyF3I	CTNAG	2 cut(s)	173, 381
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	318
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	49, 63, 267, 375
LmnI	GCTCC	1 cut(s)	454
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	2 cut(s)	351, 453
MaeII	ACGT	1 cut(s)	167
MalI	GATC	4 cut(s)	51, 65, 269, 377
MboI	GATC	4 cut(s)	49, 63, 267, 375
MboII	GAAGA	2 cut(s)	349, 397
MhlI	GDGCHC	2 cut(s)	131, 198
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	5 cut(s)	31, 35, 41, 77, 351
Mph1103I	ATGCAT	1 cut(s)	401
MseI	TTAA	2 cut(s)	263, 508
MslI	CAYNNNNRTG	1 cut(s)	489
MspR9I	CCNGG	3 cut(s)	236, 293, 364
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	3 cut(s)	236, 293, 364
NdeII	GATC	4 cut(s)	49, 63, 267, 375
NlaIV	GGNNCC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	401
PctI	GAATGC	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	235
Psp6I	CCWGG	3 cut(s)	234, 291, 362
PspGI	CCWGG	3 cut(s)	234, 291, 362
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	360
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	263, 508
Sau3AI	GATC	4 cut(s)	49, 63, 267, 375
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	3 cut(s)	236, 293, 364
SduI	GDGCHC	2 cut(s)	131, 198
SetI	ASST	7 cut(s)	23, 46, 170, 179, 356, 387, 451
SfaNI	GCATC	1 cut(s)	386
SinI	GGWCC	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	1 cut(s)	273
SspMI	CTAG	2 cut(s)	351, 453
StyD4I	CCNGG	3 cut(s)	234, 291, 362
TaaI	ACNGT	4 cut(s)	14, 193, 211, 472
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	394
TasI	AATT	1 cut(s)	273
TatI	WGTACW	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	263, 508
Tru9I	TTAA	2 cut(s)	263, 508
TscAI	CASTG	1 cut(s)	428
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	273
XspI	CTAG	2 cut(s)	351, 453
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.