Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001933.1

Orthogroup ID

OG0007995

Physical Location & Seq

Genomic Coordinates Forward (+)

88095 .. 94396

Gene Structure 6302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001933.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgcccaagtggaggtgtaggattatgtggatcactagggtctgtaccagatgtattctcttcgcctttggttaccattggataagacggataggaaaacctgctccaagagcaaccgccccaattgttgtatctaaccatgtatcttttatagaacctatattctacttttatgaactattccctacaattgtcgcatctgagtcccatgattccctaccttttgttggaaccatcatcagagcaatgcaggtgatatatgttaataggttttcaccatcatcaaggaggcaagctgttactgaaataaagagaaaagcttcatgcgatagatttcctcgagtgctcctatttcctgagggaaccacaaccaacggaagatatcttatttcatttgaacttggtgcattcatccctggttacccaatccaaccagtaattgtacgctatcctcatgtgcactttgatcaatcctgggggcacatttctttgccaaggctcatgtttcgaatgttcacgcaatttcacaatttcatggaggtcgagtaccttcctgttgtttcacctcttgataacaagaaagaaagtgctttccactttgctcagaggactagtcatgctatggcagctgcactcaatgttgtacagacatctcattcttttggagacttgatgcttctcatgaaagcagctgattcaaaatcgaaacaggtgcggccctcagcttacatggttgaaatggcgagtgtaaaatctgtactcaatataagcagcacggaagctgttgaccttttggatagatttctttctatgaatccagaccccagtggtcatgttacctatcatgatttcttgagggttctaagactcaaggcctgtaccttttctgaagagatatttgcattcatcgatgttgacaaaaatcgagccatcacatttaagcagttcttatttggatcagcgcatgtcttgaagcaacgattattccggcaagcctgtgcattagctttttctgaatgtgtttctgaggataatatctacattttagaacagcaatttggagacactatcaggcctgcaatcccggatttgactgaaaatgagatccgtgagctgttcaatctttttgatactgatcttgatgggagaatcagcaaggacgattttttctcctgtctaagaagaaatccactactaattgcccttttctcaccttgcttacttaacaaggacttctcagaagatggtagtaggttggtggaggagattgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0050200 GO:0071617 GO:0071618 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 map00564 map00565 map01100

Pfam Domains

Protein Families

Acyltransferase EF-hand_1 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

424

Amino Acids

48.8

Weight (kDa)

8.51

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45670 AT2G45670
fragaria_vesca	FvH4_7g12710 FvH4_7g12710 FvH4_7g12710
malus_domestica	MD02G1197300.v1.1 MD07G1123700.v1.1 MD15G1322400.v1.1
prunus_persica	Prupe.2G151300_v2.0.a1 Prupe.2G151300_v2.0.a1 Prupe.2G151300_v2.0.a1
pyrus_communis	pycom02g16080 pycom07g11640
rosa_chinensis	RchiOBHm_Chr1g0351731
rosa_laevigata	RLG00000028387
rosa_multiflora	Rmu_sc0001183.1_g000001 Rmu_sc0001933.1_g000017
rosa_roxburghii	Rroxscaffold_4G00303590
rosa_rugosa	Rorug01G0221000
rosa_samantha	Rh1AG234900 Rh1BG205500 Rh1CG219600 Rh1DG232500
rosa_wichuraiana	Rw1G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	2 cut(s)	109, 241
AciI	CCGC	2 cut(s)	117, 715
AclWI	GGATC	3 cut(s)	38, 964, 1099
AcuI	CTGAAG	1 cut(s)	909
AfaI	GTAC	6 cut(s)	46, 444, 548, 645, 759, 880
AfiI	CCNNNNNNNGG	2 cut(s)	12, 227
AgsI	TTSAA	5 cut(s)	398, 699, 737, 973, 1120
AhlI	ACTAGT	1 cut(s)	611
AjnI	CCWGG	2 cut(s)	415, 473
AjuI	GAANNNNNNNTTGG	2 cut(s)	1041, 1073
AluBI	AGCT	8 cut(s)	296, 320, 629, 692, 725, 782, 1007, 1114
AluI	AGCT	8 cut(s)	296, 320, 629, 692, 725, 782, 1007, 1114
Alw21I	GWGCWC	2 cut(s)	348, 462
Alw26I	GTCTC	2 cut(s)	660, 1056
Alw44I	GTGCAC	1 cut(s)	458
AlwI	GGATC	3 cut(s)	38, 964, 1099
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	3 cut(s)	716, 873, 1073
ApaLI	GTGCAC	1 cut(s)	458
ApeKI	GCWGC	4 cut(s)	626, 629, 689, 771
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	1 cut(s)	717
AsuC2I	CCSGG	1 cut(s)	1085
AsuHPI	GGTGA	4 cut(s)	265, 267, 555, 1203
AsuII	TTCGAA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	339
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	2 cut(s)	462, 483
Bbv12I	GWGCWC	2 cut(s)	348, 462
BbvCI	CCTCAGC	1 cut(s)	721
BbvI	GCAGC	4 cut(s)	616, 638, 701, 783
BccI	CCATC	5 cut(s)	242, 286, 938, 1136, 1238
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	2 cut(s)	417, 475
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	1085
BcoDI	GTCTC	2 cut(s)	660, 1056
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	2 cut(s)	36, 612
BfuAI	ACCTGC	2 cut(s)	109, 241
BisI	GCNGC	5 cut(s)	627, 630, 690, 716, 772
BlsI	GCNGC	5 cut(s)	628, 631, 691, 717, 773
Bme1390I	CCNGG	3 cut(s)	417, 475, 1085
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	717
BmiI	GGNNCC	2 cut(s)	232, 364
BmrFI	CCNGG	3 cut(s)	417, 475, 1085
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	2 cut(s)	206, 663
BmuI	ACTGGG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	721
Bpu14I	TTCGAA	1 cut(s)	508
BpuEI	CTTGAG	2 cut(s)	854, 874
BpuMI	CCSGG	1 cut(s)	1085
Bsa29I	ATCGAT	1 cut(s)	909
BsaBI	GATNNNNATC	1 cut(s)	1134
BsaJI	CCNNGG	3 cut(s)	415, 474, 494
BsaXI	ACNNNNNCTCC	3 cut(s)	530, 560, 1256
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 227
Bse1I	ACTGG	2 cut(s)	434, 825
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	1134
BseBI	CCWGG	2 cut(s)	417, 475
BseCI	ATCGAT	1 cut(s)	909
BseDI	CCNNGG	3 cut(s)	415, 474, 494
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	1134
BseLI	CCNNNNNNNGG	2 cut(s)	12, 227
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	6 cut(s)	192, 348, 617, 735, 1017, 1251
BseNI	ACTGG	2 cut(s)	434, 825
BseSI	GKGCMC	2 cut(s)	462, 483
BseXI	GCAGC	4 cut(s)	616, 638, 701, 783
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	718, 875, 1075
BshVI	ATCGAT	1 cut(s)	909
BsiHKAI	GWGCWC	2 cut(s)	348, 462
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	988, 1085
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	12, 227
BsmAI	GTCTC	2 cut(s)	660, 1056
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	2 cut(s)	407, 902
BsnI	GGCC	3 cut(s)	718, 875, 1075
BsoBI	CYCGRG	1 cut(s)	339
Bsp119I	TTCGAA	1 cut(s)	508
Bsp1286I	GDGCHC	3 cut(s)	348, 462, 483
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	5 cut(s)	30, 466, 956, 1104, 1135
BspACI	CCGC	2 cut(s)	117, 715
BspANI	GGCC	3 cut(s)	718, 875, 1075
BspCNI	CTCAG	6 cut(s)	193, 349, 616, 734, 1018, 1250
BspDI	ATCGAT	1 cut(s)	909
BspHI	TCATGA	2 cut(s)	681, 844
BspLI	GGNNCC	2 cut(s)	232, 364
BspMI	ACCTGC	2 cut(s)	109, 241
BspPI	GGATC	3 cut(s)	38, 964, 1099
BspT104I	TTCGAA	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	434, 825
BssECI	CCNNGG	3 cut(s)	415, 474, 494
BssMI	GATC	5 cut(s)	30, 466, 956, 1104, 1135
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	417, 475
Bst6I	CTCTTC	2 cut(s)	65, 885
BstAUI	TGTACA	1 cut(s)	643
BstBI	TTCGAA	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	294, 993, 1077
BstDEI	CTNAG	8 cut(s)	201, 357, 603, 721, 863, 1026, 1178, 1237
BstEII	GGTNACC	2 cut(s)	71, 419
BstF5I	GGATG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	5 cut(s)	33, 469, 959, 1107, 1138
BstMAI	GTCTC	2 cut(s)	660, 1056
BstMBI	GATC	5 cut(s)	30, 466, 956, 1104, 1135
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 626
BstNI	CCWGG	2 cut(s)	417, 475
BstNSI	RCATGY	1 cut(s)	968
BstPI	GGTNACC	2 cut(s)	71, 419
BstSCI	CCNGG	3 cut(s)	415, 473, 1083
BstSLI	GKGCMC	2 cut(s)	462, 483
BstV1I	GCAGC	4 cut(s)	616, 638, 701, 783
BstX2I	RGATCY	1 cut(s)	1104
BstYI	RGATCY	1 cut(s)	1104
Bsu15I	ATCGAT	1 cut(s)	909
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	3 cut(s)	718, 875, 1075
BsuTUI	ATCGAT	1 cut(s)	909
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	832
BveI	ACCTGC	2 cut(s)	109, 241
Cac8I	GCNNGC	3 cut(s)	294, 993, 1077
CciI	TCATGA	2 cut(s)	681, 844
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	1 cut(s)	717
ClaI	ATCGAT	1 cut(s)	909
Csp6I	GTAC	6 cut(s)	45, 443, 547, 644, 758, 879
CviQI	GTAC	6 cut(s)	45, 443, 547, 644, 758, 879
DdeI	CTNAG	8 cut(s)	201, 357, 603, 721, 863, 1026, 1178, 1237
DpnI	GATC	5 cut(s)	32, 468, 958, 1106, 1137
DpnII	GATC	5 cut(s)	30, 466, 956, 1104, 1135
Eam1104I	CTCTTC	2 cut(s)	65, 885
EarI	CTCTTC	2 cut(s)	65, 885
Eco130I	CCWWGG	1 cut(s)	494
Eco147I	AGGCCT	2 cut(s)	875, 1075
Eco32I	GATATC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	909
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	339
Eco91I	GGTNACC	2 cut(s)	71, 419
EcoO65I	GGTNACC	2 cut(s)	71, 419
EcoRII	CCWGG	2 cut(s)	415, 473
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FalI	AAGNNNNNCTT	2 cut(s)	932, 964
FaqI	GGGAC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	627, 630, 690, 716, 772
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	5 cut(s)	627, 630, 690, 716, 772
FspBI	CTAG	2 cut(s)	36, 612
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	5 cut(s)	627, 630, 690, 716, 772
HaeIII	GGCC	3 cut(s)	718, 875, 1075
HapII	CCGG	2 cut(s)	988, 1085
HhaI	GCGC	1 cut(s)	964
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HincII	GTYRAC	2 cut(s)	787, 916
HindII	GTYRAC	2 cut(s)	787, 916
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	6 cut(s)	203, 212, 695, 814, 867, 1149
HpaII	CCGG	2 cut(s)	988, 1085
HphI	GGTGA	4 cut(s)	265, 267, 555, 1203
Hpy166II	GTNNAC	4 cut(s)	460, 516, 787, 916
Hpy188I	TCNGA	7 cut(s)	202, 242, 606, 889, 1015, 1027, 1240
Hpy188III	TCNNGA	8 cut(s)	356, 569, 682, 818, 845, 853, 970, 1139
Hpy8I	GTNNAC	4 cut(s)	460, 516, 787, 916
HpyAV	CCTTC	1 cut(s)	560
HpyCH4V	TGCA	7 cut(s)	250, 407, 460, 632, 902, 1001, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 626
HpyF3I	CTNAG	8 cut(s)	201, 357, 603, 721, 863, 1026, 1178, 1237
HspAI	GCGC	1 cut(s)	962
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	30, 466, 956, 1104, 1135
LmnI	GCTCC	2 cut(s)	109, 351
Lsp1109I	GCAGC	4 cut(s)	616, 638, 701, 783
LweI	GCATC	2 cut(s)	206, 663
MaeI	CTAG	2 cut(s)	36, 612
MaeIII	GTNAC	4 cut(s)	71, 298, 419, 835
MalI	GATC	5 cut(s)	32, 468, 958, 1106, 1137
MboI	GATC	5 cut(s)	30, 466, 956, 1104, 1135
MboII	GAAGA	5 cut(s)	52, 390, 902, 1194, 1253
MfeI	CAATTG	2 cut(s)	123, 189
MflI	RGATCY	1 cut(s)	1104
MhlI	GDGCHC	3 cut(s)	348, 462, 483
MluCI	AATT	7 cut(s)	123, 189, 438, 521, 529, 1055, 1197
MlyI	GAGTC	2 cut(s)	212, 861
MmeI	TCCRAC	2 cut(s)	208, 454
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	3 cut(s)	264, 939, 1224
MspA1I	CMGCKG	2 cut(s)	629, 692
MspI	CCGG	2 cut(s)	988, 1085
MspR9I	CCNGG	3 cut(s)	417, 475, 1085
MunI	CAATTG	2 cut(s)	123, 189
Mva1269I	GAATGC	2 cut(s)	407, 902
MvaI	CCWGG	2 cut(s)	417, 475
MwoI	GCNNNNNNNGC	2 cut(s)	110, 626
NciI	CCSGG	1 cut(s)	1085
NdeII	GATC	5 cut(s)	30, 466, 956, 1104, 1135
NlaIV	GGNNCC	2 cut(s)	232, 364
NspI	RCATGY	1 cut(s)	968
NspV	TTCGAA	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	339
PagI	TCATGA	2 cut(s)	681, 844
PaqCI	CACCTGC	1 cut(s)	241
PceI	AGGCCT	2 cut(s)	875, 1075
PctI	GAATGC	2 cut(s)	407, 902
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	4 cut(s)	212, 695, 814, 1149
PfoI	TCCNGGA	1 cut(s)	1083
PkrI	GCNGC	5 cut(s)	628, 631, 691, 717, 773
PleI	GAGTC	2 cut(s)	211, 861
PpsI	GAGTC	2 cut(s)	211, 861
Psp6I	CCWGG	2 cut(s)	415, 473
PspEI	GGTNACC	2 cut(s)	71, 419
PspGI	CCWGG	2 cut(s)	415, 473
PspN4I	GGNNCC	2 cut(s)	232, 364
PspPI	GGNCC	1 cut(s)	717
PspXI	VCTCGAGB	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	1104
PvuII	CAGCTG	2 cut(s)	629, 692
RsaI	GTAC	6 cut(s)	46, 444, 548, 645, 759, 880
RsaNI	GTAC	6 cut(s)	45, 443, 547, 644, 758, 879
SaqAI	TTAA	3 cut(s)	264, 939, 1224
SatI	GCNGC	5 cut(s)	627, 630, 690, 716, 772
Sau3AI	GATC	5 cut(s)	30, 466, 956, 1104, 1135
Sau96I	GGNCC	1 cut(s)	717
SchI	GAGTC	2 cut(s)	212, 861
ScrFI	CCNGG	3 cut(s)	417, 475, 1085
SduI	GDGCHC	3 cut(s)	348, 462, 483
SfaNI	GCATC	2 cut(s)	206, 663
Sfr274I	CTCGAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	339
SmlI	CTYRAG	3 cut(s)	339, 853, 869
SmoI	CTYRAG	3 cut(s)	339, 853, 869
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	7 cut(s)	123, 189, 438, 521, 529, 1055, 1197
SseBI	AGGCCT	2 cut(s)	875, 1075
SsiI	CCGC	2 cut(s)	117, 715
SspMI	CTAG	2 cut(s)	36, 612
StuI	AGGCCT	2 cut(s)	875, 1075
StyD4I	CCNGG	3 cut(s)	415, 473, 1083
StyI	CCWWGG	1 cut(s)	494
TaqI	TCGA	6 cut(s)	340, 508, 543, 704, 909, 925
TasI	AATT	7 cut(s)	123, 189, 438, 521, 529, 1055, 1197
TatI	WGTACW	2 cut(s)	643, 757
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	4 cut(s)	212, 695, 814, 1149
Tru1I	TTAA	3 cut(s)	264, 939, 1224
Tru9I	TTAA	3 cut(s)	264, 939, 1224
TscAI	CASTG	1 cut(s)	832
TseI	GCWGC	4 cut(s)	626, 629, 689, 771
TspDTI	ATGAA	8 cut(s)	189, 312, 381, 400, 523, 698, 827, 895
TspGWI	ACGGA	4 cut(s)	103, 390, 791, 1097
TspRI	CASTG	1 cut(s)	832
VneI	GTGCAC	1 cut(s)	458
XceI	RCATGY	1 cut(s)	968
XhoI	CTCGAG	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	2 cut(s)	36, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.