Rh1CG219600

Acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007995
Physical Location & Seq
Reverse (-)
47028629 .. 47036086
7458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG219600.1

Sequence Viewer

Length: 1365 bp
ATGCCTTACACCCAAACAGTAACCACCACCACCACAATGGGCCAGGCCGGCCTCACCCTCACCGCGCCGCTCCTCTCTCCTCCTCCTCCTCCGCCGTCCGATCAACCCCACTTGATCGTCACCGTCCACGACGACGACGACGACGGCGACGGCAACGGCAGCTTCCGCAACCCGTTTGCGTTTCTCGGGTCGGGCGGGTTTAAGGTGCCCGTATCGACGACGGCGGATCCGTTCAAGAACCATACTTTGAAAATCGGAGGGGTTTACGAGTGGTTAAAGATCGGGGTTTGCTTCCCCATCGCGATTGTGAGGCTTGTGATCTTTGGGGTTTCGTTGCTGATTGGGTTTGTGGCCACCAAATTGGCTCTGTTGGGATGGAAGGAGAGGCAGAACCCTATGCCCAAGTGGAGGTGTAGGATTATGTGGATCACTAGGGTCTGTACCAGATGTATTCTCTTCGCCTTTGGTTACCATTGGATAAGACGGATAGGAAAACCTGCTTCAAGAGCAAACGCCCCAATTGTTGTATCTAACCATGTATCTTTTATAGAACCTATATTCTACTTTTATGAACTATTCCCTACAATTGTCGCATCTGAGTCCCATGATTCCCTACCTTTTGTTGGAACCATCATCAGAGCAATGCAGGTGATATATGTTAATAGGTTTTCACCATCATCAAGGAGGCAAGCTGTTACTGAAATAAAGAGAAAAGCTTCATGCGATAGATTTCCTCGAGTGCTCCTATTTCCTGAGGGAACCACAACCAACGGAAGATATCTTATTTCATTTGAACTTGGTGCATTCATCCCTGGTTACCCAATCCAACCAGTAATTGTACGCTATCCTCATGTGCACTTTGATCAATCCTGGGGGCACATTTCTTTGCCAAGGCTCATGTTTCGAATGTTCACGCAATTTCACAATTTCATGGAGGTCGAGTACCTTCCTGTTGTTTCACCTCTTGATAACAAGAAAGAAAGTGCTTTCCACTTTGCTCAGAGGACTAGTCATGCTATGGCAGCTGCACTAAATGTTGTACAGACATCTCATTCTTTTGGAGACTTGATGCTTCTCATGAAAGCAGCTGATTCAAAATCGAAACAGGTGCGGCCCTCAGCTTACATGGTTGAAATGGCGAGTGTAAAATCTGTACTCAATATAAGCAGCACGGAAGCTGTTGACCTTTTGGATAGATTTCTTTCTATGAATCCAGACCCCAGTGGTCATGTTACCTATCATGATTTCTTGAGGGTTCTAAGACTCAAGGCCTGTACCTTTTCTGAAGAGGTCAGTTACCACATCCTTTGCTTAATCATTTCCCTTCTCTCTTGGTATTCTACCTTCTTGAACTTAAAATGCTAA

Protein Analysis

454

Amino Acids

51.19

Weight (kDa)

9.25

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 171 - 280 2.8e-14 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 637
Acc36I ACCTGC 2 cut(s) 505, 637
AccB1I GGYRCC 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 70
AccII CGCG 2 cut(s) 65, 302
AciI CCGC 7 cut(s) 63, 68, 92, 166, 195, 224, 1111
AclWI GGATC 3 cut(s) 221, 234, 434
AcoI YGGCCR 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 1305
AfaI GTAC 6 cut(s) 442, 840, 944, 1041, 1155, 1276
AfiI CCNNNNNNNGG 2 cut(s) 408, 623
AgsI TTSAA 7 cut(s) 235, 250, 504, 794, 1095, 1133, 1351
AhlI ACTAGT 1 cut(s) 1007
AjnI CCWGG 3 cut(s) 42, 811, 869
AluBI AGCT 7 cut(s) 162, 692, 716, 1025, 1088, 1121, 1178
AluI AGCT 7 cut(s) 162, 692, 716, 1025, 1088, 1121, 1178
Alw21I GWGCWC 2 cut(s) 744, 858
Alw26I GTCTC 1 cut(s) 1056
Alw44I GTGCAC 1 cut(s) 854
AlwI GGATC 3 cut(s) 221, 234, 434
Ama87I CYCGRG 2 cut(s) 185, 735
AoxI GGCC 6 cut(s) 40, 45, 49, 351, 1112, 1269
ApaLI GTGCAC 1 cut(s) 854
ApeKI GCWGC 5 cut(s) 159, 1022, 1025, 1085, 1167
Asp700I GAANNNNTTC 1 cut(s) 715
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 40, 1113
AsuHPI GGTGA 6 cut(s) 46, 52, 112, 661, 663, 951
AsuII TTCGAA 1 cut(s) 904
AvaI CYCGRG 2 cut(s) 185, 735
AxyI CCTNAGG 1 cut(s) 753
BaeGI GKGCMC 3 cut(s) 210, 858, 879
BalI TGGCCA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 205
BarI GAAGNNNNNNTAC 2 cut(s) 1328, 1360
Bbv12I GWGCWC 2 cut(s) 744, 858
BbvCI CCTCAGC 1 cut(s) 1117
BbvI GCAGC 5 cut(s) 171, 1012, 1034, 1097, 1179
BccI CCATC 4 cut(s) 305, 369, 638, 682
BceAI ACGGC 5 cut(s) 79, 160, 166, 172, 237
BcgI CGANNNNNNTGC 2 cut(s) 1090, 1124
BciT130I CCWGG 3 cut(s) 44, 813, 871
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 1 cut(s) 1056
BcuI ACTAGT 1 cut(s) 1007
BfaI CTAG 2 cut(s) 432, 1008
BfuAI ACCTGC 2 cut(s) 505, 637
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 7 cut(s) 68, 160, 1023, 1026, 1086, 1112, 1168
BlsI GCNGC 7 cut(s) 69, 161, 1024, 1027, 1087, 1113, 1169
Bme1390I CCNGG 3 cut(s) 44, 813, 871
BmeT110I CYCGRG 2 cut(s) 185, 735
BmgT120I GGNCC 2 cut(s) 40, 1113
BmiI GGNNCC 4 cut(s) 207, 228, 628, 760
BmrFI CCNGG 3 cut(s) 44, 813, 871
BmrI ACTGGG 1 cut(s) 1215
BmsI GCATC 2 cut(s) 602, 1059
BmuI ACTGGG 1 cut(s) 1215
Bpu10I CCTNAGC 1 cut(s) 1117
Bpu14I TTCGAA 1 cut(s) 904
BpuEI CTTGAG 2 cut(s) 1250, 1270
BsaJI CCNNGG 3 cut(s) 811, 870, 890
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 623
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 830, 1221
Bse21I CCTNAGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 3 cut(s) 44, 813, 871
BseDI CCNNGG 3 cut(s) 811, 870, 890
BseGI GGATG 3 cut(s) 380, 807, 1302
BseLI CCNNNNNNNGG 2 cut(s) 408, 623
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 4 cut(s) 588, 744, 1013, 1131
BseNI ACTGG 2 cut(s) 830, 1221
BseRI GAGGAG 5 cut(s) 62, 69, 72, 75, 78
BseSI GKGCMC 3 cut(s) 210, 858, 879
BseXI GCAGC 5 cut(s) 171, 1012, 1034, 1097, 1179
BsgI GTGCAG 1 cut(s) 1011
Bsh1236I CGCG 2 cut(s) 65, 302
BshFI GGCC 6 cut(s) 42, 47, 51, 353, 1114, 1271
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 2 cut(s) 744, 858
BsiHKCI CYCGRG 2 cut(s) 185, 735
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 2 cut(s) 408, 623
BsmAI GTCTC 1 cut(s) 1056
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 803
BsnI GGCC 6 cut(s) 42, 47, 51, 353, 1114, 1271
BsoBI CYCGRG 2 cut(s) 185, 735
Bsp119I TTCGAA 1 cut(s) 904
Bsp1286I GDGCHC 4 cut(s) 210, 744, 858, 879
Bsp1407I TGTACA 1 cut(s) 1039
Bsp143I GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
Bsp68I TCGCGA 1 cut(s) 302
BspACI CCGC 7 cut(s) 63, 68, 92, 166, 195, 224, 1111
BspANI GGCC 6 cut(s) 42, 47, 51, 353, 1114, 1271
BspCNI CTCAG 4 cut(s) 589, 745, 1012, 1130
BspFNI CGCG 2 cut(s) 65, 302
BspHI TCATGA 2 cut(s) 1077, 1240
BspLI GGNNCC 4 cut(s) 207, 228, 628, 760
BspMI ACCTGC 2 cut(s) 505, 637
BspPI GGATC 3 cut(s) 221, 234, 434
BspT104I TTCGAA 1 cut(s) 904
BspT107I GGYRCC 1 cut(s) 205
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 1039
BsrI ACTGG 2 cut(s) 830, 1221
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 811, 870, 890
BssMI GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
BssT1I CCWWGG 1 cut(s) 890
Bst2UI CCWGG 3 cut(s) 44, 813, 871
Bst4CI ACNGT 2 cut(s) 19, 124
Bst6I CTCTTC 2 cut(s) 461, 1281
BstAUI TGTACA 1 cut(s) 1039
BstBI TTCGAA 1 cut(s) 904
BstC8I GCNNGC 2 cut(s) 49, 690
BstDEI CTNAG 5 cut(s) 597, 753, 999, 1117, 1259
BstEII GGTNACC 2 cut(s) 467, 815
BstF5I GGATG 3 cut(s) 380, 807, 1302
BstFNI CGCG 2 cut(s) 65, 302
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 7 cut(s) 103, 117, 229, 282, 321, 429, 865
BstMAI GTCTC 1 cut(s) 1056
BstMBI GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
BstMWI GCNNNNNNNGC 5 cut(s) 48, 159, 165, 506, 1022
BstNI CCWGG 3 cut(s) 44, 813, 871
BstPI GGTNACC 2 cut(s) 467, 815
BstSCI CCNGG 3 cut(s) 42, 811, 869
BstSLI GKGCMC 3 cut(s) 210, 858, 879
BstUI CGCG 2 cut(s) 65, 302
BstV1I GCAGC 5 cut(s) 171, 1012, 1034, 1097, 1179
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 2 cut(s) 37, 361
BstYI RGATCY 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 753
BsuRI GGCC 6 cut(s) 42, 47, 51, 353, 1114, 1271
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 3 cut(s) 380, 807, 1302
BtsIMutI CAGTG 1 cut(s) 1228
BtuMI TCGCGA 1 cut(s) 302
BveI ACCTGC 2 cut(s) 505, 637
Cac8I GCNNGC 2 cut(s) 49, 690
CciI TCATGA 2 cut(s) 1077, 1240
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 40, 1113
Csp6I GTAC 6 cut(s) 441, 839, 943, 1040, 1154, 1275
CspCI CAANNNNNGTGG 2 cut(s) 1289, 1324
CviQI GTAC 6 cut(s) 441, 839, 943, 1040, 1154, 1275
DdeI CTNAG 5 cut(s) 597, 753, 999, 1117, 1259
DpnI GATC 7 cut(s) 102, 116, 228, 281, 320, 428, 864
DpnII GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 461, 1281
EarI CTCTTC 2 cut(s) 461, 1281
EciI GGCGGA 2 cut(s) 81, 239
Eco130I CCWWGG 1 cut(s) 890
Eco147I AGGCCT 1 cut(s) 1271
Eco32I GATATC 1 cut(s) 779
Eco57I CTGAAG 1 cut(s) 1305
Eco81I CCTNAGG 1 cut(s) 753
Eco88I CYCGRG 2 cut(s) 185, 735
Eco91I GGTNACC 2 cut(s) 467, 815
EcoO65I GGTNACC 2 cut(s) 467, 815
EcoRII CCWGG 3 cut(s) 42, 811, 869
EcoRV GATATC 1 cut(s) 779
EcoT14I CCWWGG 1 cut(s) 890
ErhI CCWWGG 1 cut(s) 890
FaqI GGGAC 1 cut(s) 586
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 7 cut(s) 68, 160, 1023, 1026, 1086, 1112, 1168
FokI GGATG 3 cut(s) 387, 794, 1289
FseI GGCCGGCC 1 cut(s) 51
Fsp4HI GCNGC 7 cut(s) 68, 160, 1023, 1026, 1086, 1112, 1168
FspBI CTAG 2 cut(s) 432, 1008
GlaI GCGC 1 cut(s) 66
GluI GCNGC 7 cut(s) 68, 160, 1023, 1026, 1086, 1112, 1168
HaeIII GGCC 6 cut(s) 42, 47, 51, 353, 1114, 1271
HapII CCGG 1 cut(s) 48
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 5 cut(s) 599, 608, 1091, 1210, 1263
HpaII CCGG 1 cut(s) 48
HphI GGTGA 6 cut(s) 46, 52, 112, 661, 663, 951
Hpy166II GTNNAC 5 cut(s) 127, 265, 856, 912, 1183
Hpy188I TCNGA 6 cut(s) 100, 257, 598, 638, 1002, 1285
Hpy8I GTNNAC 5 cut(s) 127, 265, 856, 912, 1183
Hpy99I CGWCG 8 cut(s) 134, 137, 140, 143, 146, 152, 220, 223
HpyAV CCTTC 4 cut(s) 373, 956, 1334, 1354
HpyCH4III ACNGT 2 cut(s) 19, 124
HpyCH4V TGCA 4 cut(s) 646, 803, 856, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 159, 165, 506, 1022
HpyF3I CTNAG 5 cut(s) 597, 753, 999, 1117, 1259
HspAI GCGC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
LmnI GCTCC 2 cut(s) 75, 747
Lsp1109I GCAGC 5 cut(s) 171, 1012, 1034, 1097, 1179
LweI GCATC 2 cut(s) 602, 1059
MaeI CTAG 2 cut(s) 432, 1008
MaeIII GTNAC 7 cut(s) 19, 118, 467, 694, 815, 1231, 1295
MalI GATC 7 cut(s) 102, 116, 228, 281, 320, 428, 864
MbiI CCGCTC 1 cut(s) 70
MboI GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
MboII GAAGA 3 cut(s) 448, 786, 1298
MfeI CAATTG 2 cut(s) 519, 585
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 4 cut(s) 210, 744, 858, 879
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 6 cut(s) 359, 519, 585, 834, 917, 925
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 2 cut(s) 608, 1257
MmeI TCCRAC 2 cut(s) 604, 850
Mox20I TGGCCA 1 cut(s) 353
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 715
MscI TGGCCA 1 cut(s) 353
MseI TTAA 5 cut(s) 201, 275, 660, 1313, 1355
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 2 cut(s) 1025, 1088
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 3 cut(s) 44, 813, 871
MunI CAATTG 2 cut(s) 519, 585
Mva1269I GAATGC 1 cut(s) 803
MvaI CCWGG 3 cut(s) 44, 813, 871
MvnI CGCG 2 cut(s) 65, 302
MwoI GCNNNNNNNGC 5 cut(s) 48, 159, 165, 506, 1022
NaeI GCCGGC 1 cut(s) 49
NdeII GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
NgoMIV GCCGGC 1 cut(s) 47
NlaIV GGNNCC 4 cut(s) 207, 228, 628, 760
NmuCI GTSAC 1 cut(s) 118
NruI TCGCGA 1 cut(s) 302
NspV TTCGAA 1 cut(s) 904
PaeR7I CTCGAG 1 cut(s) 735
PagI TCATGA 2 cut(s) 1077, 1240
PaqCI CACCTGC 1 cut(s) 637
PceI AGGCCT 1 cut(s) 1271
PcsI WCGNNNNNNNCGW 4 cut(s) 135, 138, 144, 227
PctI GAATGC 1 cut(s) 803
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 608, 1091, 1210
PkrI GCNGC 7 cut(s) 69, 161, 1024, 1027, 1087, 1113, 1169
PleI GAGTC 2 cut(s) 607, 1257
PpsI GAGTC 2 cut(s) 607, 1257
Psp6I CCWGG 3 cut(s) 42, 811, 869
PspEI GGTNACC 2 cut(s) 467, 815
PspGI CCWGG 3 cut(s) 42, 811, 869
PspN4I GGNNCC 4 cut(s) 207, 228, 628, 760
PspPI GGNCC 2 cut(s) 40, 1113
PspXI VCTCGAGB 1 cut(s) 735
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 2 cut(s) 1025, 1088
RigI GGCCGGCC 1 cut(s) 51
RruI TCGCGA 1 cut(s) 302
RsaI GTAC 6 cut(s) 442, 840, 944, 1041, 1155, 1276
RsaNI GTAC 6 cut(s) 441, 839, 943, 1040, 1154, 1275
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 5 cut(s) 201, 275, 660, 1313, 1355
SatI GCNGC 7 cut(s) 68, 160, 1023, 1026, 1086, 1112, 1168
Sau3AI GATC 7 cut(s) 100, 114, 226, 279, 318, 426, 862
Sau96I GGNCC 2 cut(s) 40, 1113
SchI GAGTC 2 cut(s) 608, 1257
ScrFI CCNGG 3 cut(s) 44, 813, 871
SduI GDGCHC 4 cut(s) 210, 744, 858, 879
SfaNI GCATC 2 cut(s) 602, 1059
SfiI GGCCNNNNNGGCC 1 cut(s) 48
Sfr274I CTCGAG 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 904
SlaI CTCGAG 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 3 cut(s) 735, 1249, 1265
SmoI CTYRAG 3 cut(s) 735, 1249, 1265
SpeI ACTAGT 1 cut(s) 1007
Sse9I AATT 6 cut(s) 359, 519, 585, 834, 917, 925
SseBI AGGCCT 1 cut(s) 1271
SsiI CCGC 7 cut(s) 63, 68, 92, 166, 195, 224, 1111
SspMI CTAG 2 cut(s) 432, 1008
StuI AGGCCT 1 cut(s) 1271
StyD4I CCNGG 3 cut(s) 42, 811, 869
StyI CCWWGG 1 cut(s) 890
TaaI ACNGT 2 cut(s) 19, 124
TaqI TCGA 5 cut(s) 215, 736, 904, 939, 1100
TasI AATT 6 cut(s) 359, 519, 585, 834, 917, 925
TatI WGTACW 2 cut(s) 1039, 1153
TauI GCSGC 2 cut(s) 70, 1114
TfiI GAWTC 3 cut(s) 608, 1091, 1210
Tru1I TTAA 5 cut(s) 201, 275, 660, 1313, 1355
Tru9I TTAA 5 cut(s) 201, 275, 660, 1313, 1355
TscAI CASTG 1 cut(s) 1228
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 5 cut(s) 159, 1022, 1025, 1085, 1167
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 7 cut(s) 585, 708, 777, 796, 919, 1094, 1223
TspGWI ACGGA 4 cut(s) 219, 499, 786, 1187
TspRI CASTG 1 cut(s) 1228
VneI GTGCAC 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 735
XmnI GAANNNNTTC 1 cut(s) 715
XspI CTAG 2 cut(s) 432, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.