MD15G1340300.v1.1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
38504417 .. 38510101
5685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1340300.v1.1.491

Sequence Viewer

Length: 2178 bp
ATGAGCAACATCACGAAAACTGCAAATTGGGTTGTTTTGGTTCTTCTTGTAATAACAGTGAAAGTCAGTGGTCGTTCTTTTGGACTCAATACTCGGAGTACTTCGTCTTCCCAATTGGTTTCAGATGGAACAGATCATGCATATCAAAATCAAAGCAGCTGCTCCCTCTTACTTCTCAAAGGAGTTGAGAATATCGATTCCACAGAGTCGTCTTGCGAGCAGCTTTACGGGTTCTTGCCATGCTCCGACAGTGTTTTTGGGCATGTGTTTCTAATGGTGGTCTATGAGTACTTGTTGTTTCATGGTGAGTCGTATTTGGCGGCTGGAGGTGAACAGATTTTCAAGATTTTGGGTCCTGGTGTGTTTGGTGCTAGTGCTTTTCATGTCATCGGTGCCCTTCCTGAGTCTCTATTACTTCTTGCTTCTGGATTTTTTAACTCCAAGGAAGTCGCTCAGGAGTATGTCTATACTGGAGTTGGGCTGTTGGCTGGATCATCAATTTTGAGCTTAACAATACTTTGGGGGACTTGTGTAATTGTCAGCAGCCAACAATTTTCAGATAATCAAAGCTCTAAGGCTTCCAATGAGTCAGATTCATCACTTTTATCATGGAAAAGACTGCCTGCATCATTGACAGATTGTGGTATTACAACGGATTTAGAGACCAGCAGCCTTGCGAAGATAATGATTTGTTCAGTAGTACCATTTCTTATCATGCAAATGGCAAAAATCTTTCCATCCTCTTCCGGGGAACGCATCGCAATCTTGACTGCTCTCAGTGTTTCTGTTGTATTCTTATTATTGTACTTCATTTATCAGATCTTCCGTCCCTGGGTTCAAAAAAGAAGATTAGAATTTGTGAAACATGGGCATTTGATTTCAAGCATTTTACAACATGTCCAAAAACATGCACTGGCGAGAGTCCTCACTGTAAAAGGGGCACCAAATATACCTGCTATAAGAAGACTATTTGAGGAAGTAGACGAAGATGGTGACAATTATATATCGCTTACTGAAGTAAAAGAACTTCTTCGTGAAATCAAATTCATATCAACGGAAGACGATACTGATAAAGGAACAGCAGAAGTGATGAAACAGTTTGATCTGGATCATGATGGGAAGATTAATAAAGATGAATTCATCAATGGCTTCACAAAATGGATTGAGGAGATCAAGTCAGTGCATAAACAAAATACCGAAAGATCGTTGGAGAACATATATGAGGTCTTTCAACCTTGGATTGAAAATAGAAGACGAGAACGTGAAATGAAGAAGAATTTAATGTCAGAAGTACTAAGACATGTCCAAAGCAATTCACTTGGAAGCATTGTCACAAATGACGGCATGCCTGATATACCAAATATCAGAAGGTTGTTTGAAAAGATTGATCTCGATGGAAATAATTATATATCGCAATCAGAATTGAGAAAACTGATCGGAGATATCAAGTTTGGTAAGATTCCGGGAGACGTGGATGAATCAGTTGTAAAATTGATAGAAGAACTTGACACAAGTGGAGACCAGTTGATCAGTGAGGAAGAATTTGTTACTGGATTAACAAAATGGATAAACAAATCCAACGATCAAGCTCCTCCGTCACTTGAATCGGAGGACGATATCTACCAAAGGACATGGGACGAAACAGATAAGTTGGTGGATGAAGAGTACAGCAGTGGTGGAGCTGTCGACAAGTCAAAATGGGCTTGGATGAAAGCTATAACATATTTGGTTCTAGGGTTTGTTGTATTGGCAGTTTTAGCAGAACCTCTTATAGATAGTGTTCAGGATTTCTCCACAGCTGCAAGCATCCCTTCTTTCTTTGTATCATTTGTGCTAGTCCCCTTGGCAACCAATGCCAGACAAGCCACTTCAGCGATTAAGGCAGCTTCAAGAAAAACACCAAGAACCACATCTTTGACATTTTCTGAGATTTATGGTGGGGTGTTTATGAACAATGTTCTGGGATTTTCTGTGTTGCTAGCCATAATTTATGCTCGTGAAATGGCTTGGGATTTTTCTGCTGAAGTTTTAGTAGTTCTAATTGTCTGCACTGTGATGGGTCTCATTGCAAGCTTCGTCTCCACCTTTTCCCTTTGGACATCATTCTTGGCCTACCTTCTATACCCAATTTCATTGCTTTTAGTCTATATTCTCAATGATGTTCTCAATTATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

726

Amino Acids

80.78

Weight (kDa)

5.01

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 319 - 384 2.9e-12 EF-hand domain pair
EF-hand_7 PF13499 455 - 517 9.7e-11 EF-hand domain pair
Na_Ca_ex PF01699 572 - 716 4.7e-12 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 961
AccB1I GGYRCC 2 cut(s) 392, 940
AccI GTMKAC 2 cut(s) 981, 1686
AciI CCGC 1 cut(s) 320
AclWI GGATC 2 cut(s) 499, 1116
AcsI RAATTY 5 cut(s) 854, 1043, 1136, 1276, 1541
AcuI CTGAAG 3 cut(s) 1035, 1854, 2043
AfaI GTAC 6 cut(s) 100, 290, 702, 806, 1293, 1667
AfiI CCNNNNNNNGG 2 cut(s) 747, 832
AflIII ACRYGT 2 cut(s) 895, 1300
AgsI TTSAA 8 cut(s) 343, 839, 882, 1232, 1244, 1379, 1604, 1890
AjiI CACGTC 1 cut(s) 1471
AjnI CCWGG 2 cut(s) 355, 830
Alw26I GTCTC 6 cut(s) 411, 656, 1461, 1512, 2066, 2083
AlwI GGATC 2 cut(s) 499, 1116
AoxI GGCC 1 cut(s) 2109
ApeKI GCWGC 7 cut(s) 156, 159, 220, 543, 669, 1799, 1883
ApoI RAATTY 5 cut(s) 854, 1043, 1136, 1276, 1541
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
AseI ATTAAT 1 cut(s) 1125
Asp700I GAANNNNTTC 1 cut(s) 1029
AspS9I GGNCC 1 cut(s) 353
AsuC2I CCSGG 2 cut(s) 748, 1464
AsuHPI GGTGA 3 cut(s) 317, 341, 1004
AsuNHI GCTAGC 1 cut(s) 1978
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 2 cut(s) 397, 943
BanI GGYRCC 2 cut(s) 392, 940
BarI GAAGNNNNNNTAC 4 cut(s) 91, 123, 1011, 1043
BauI CACGAG 1 cut(s) 1995
BbsI GAAGAC 4 cut(s) 99, 970, 1065, 1258
BbvI GCAGC 7 cut(s) 146, 168, 232, 555, 681, 1786, 1895
BccI CCATC 6 cut(s) 119, 745, 983, 1109, 1388, 2050
BceAI ACGGC 1 cut(s) 1357
BciT130I CCWGG 2 cut(s) 357, 832
BclI TGATCA 1 cut(s) 1527
BcnI CCSGG 2 cut(s) 748, 1464
BcoDI GTCTC 6 cut(s) 411, 656, 1461, 1512, 2066, 2083
BfaI CTAG 4 cut(s) 372, 1733, 1835, 1979
BfuAI ACCTGC 1 cut(s) 961
BglII AGATCT 1 cut(s) 819
BisI GCNGC 8 cut(s) 157, 160, 221, 321, 544, 670, 1800, 1884
BlsI GCNGC 8 cut(s) 158, 161, 222, 322, 545, 671, 1801, 1885
BmcAI AGTACT 3 cut(s) 100, 290, 1293
Bme1390I CCNGG 4 cut(s) 357, 748, 832, 1464
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 1471
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 3 cut(s) 354, 394, 942
BmrFI CCNGG 4 cut(s) 357, 748, 832, 1464
BmsI GCATC 3 cut(s) 635, 765, 1815
BmtI GCTAGC 1 cut(s) 1982
BpiI GAAGAC 4 cut(s) 99, 970, 1065, 1258
BpmI CTGGAG 2 cut(s) 345, 492
Bpu10I CCTNAGC 1 cut(s) 453
BpuMI CCSGG 2 cut(s) 748, 1464
Bsa29I ATCGAT 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 1107
BsaI GGTCTC 3 cut(s) 656, 1512, 2066
BsaJI CCNNGG 6 cut(s) 441, 747, 830, 831, 1235, 1842
BsaXI ACNNNNNCTCC 2 cut(s) 1160, 1190
Bsc4I CCNNNNNNNGG 2 cut(s) 747, 832
Bse1I ACTGG 4 cut(s) 475, 918, 1522, 1555
Bse3DI GCAATG 2 cut(s) 2064, 2132
Bse8I GATNNNNATC 1 cut(s) 1107
BseBI CCWGG 2 cut(s) 357, 832
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 6 cut(s) 441, 747, 830, 831, 1235, 1842
BseGI GGATG 5 cut(s) 737, 1480, 1663, 1713, 1806
BseJI GATNNNNATC 1 cut(s) 1107
BseLI CCNNNNNNNGG 2 cut(s) 747, 832
BseMI GCAATG 2 cut(s) 2064, 2132
BseMII CTCAG 4 cut(s) 393, 467, 790, 1917
BseNI ACTGG 4 cut(s) 475, 918, 1522, 1555
BseRI GAGGAG 2 cut(s) 1181, 1581
BseSI GKGCMC 2 cut(s) 397, 943
BseXI GCAGC 7 cut(s) 146, 168, 232, 555, 681, 1786, 1895
BsgI GTGCAG 1 cut(s) 2032
BshFI GGCC 1 cut(s) 2111
BshNI GGYRCC 2 cut(s) 392, 940
BshVI ATCGAT 1 cut(s) 195
BsiSI CCGG 2 cut(s) 747, 1463
BslFI GGGAC 4 cut(s) 538, 813, 1649, 1823
BslI CCNNNNNNNGG 2 cut(s) 747, 832
BsmAI GTCTC 6 cut(s) 411, 656, 1461, 1512, 2066, 2083
BsmBI CGTCTC 2 cut(s) 1461, 2083
BsmFI GGGAC 4 cut(s) 538, 813, 1649, 1823
BsnI GGCC 1 cut(s) 2111
Bso31I GGTCTC 3 cut(s) 656, 1512, 2066
Bsp1286I GDGCHC 2 cut(s) 397, 943
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 2111
BspCNI CTCAG 4 cut(s) 394, 466, 789, 1918
BspDI ATCGAT 1 cut(s) 195
BspHI TCATGA 1 cut(s) 1111
BspLI GGNNCC 3 cut(s) 354, 394, 942
BspMI ACCTGC 1 cut(s) 961
BspOI GCTAGC 1 cut(s) 1982
BspPI GGATC 2 cut(s) 499, 1116
BspT107I GGYRCC 2 cut(s) 392, 940
BspTNI GGTCTC 3 cut(s) 656, 1512, 2066
BsrDI GCAATG 2 cut(s) 2064, 2132
BsrI ACTGG 4 cut(s) 475, 918, 1522, 1555
BssECI CCNNGG 6 cut(s) 441, 747, 830, 831, 1235, 1842
BssSI CACGAG 1 cut(s) 1995
BssT1I CCWWGG 3 cut(s) 441, 1235, 1842
Bst2BI CACGAG 1 cut(s) 1995
Bst2UI CCWGG 2 cut(s) 357, 832
Bst4CI ACNGT 5 cut(s) 58, 251, 931, 1098, 2053
Bst6I CTCTTC 2 cut(s) 748, 1656
BstAPI GCANNNNNTGC 1 cut(s) 1853
BstC8I GCNNGC 6 cut(s) 218, 624, 1346, 1804, 1980, 2071
BstDEI CTNAG 6 cut(s) 402, 453, 573, 776, 1295, 1926
BstF5I GGATG 5 cut(s) 737, 1480, 1663, 1713, 1806
BstMAI GTCTC 6 cut(s) 411, 656, 1461, 1512, 2066, 2083
BstMWI GCNNNNNNNGC 5 cut(s) 1757, 1853, 1862, 1871, 1880
BstNI CCWGG 2 cut(s) 357, 832
BstNSI RCATGY 5 cut(s) 266, 899, 911, 1304, 1348
BstSCI CCNGG 4 cut(s) 355, 746, 830, 1462
BstSLI GKGCMC 2 cut(s) 397, 943
BstV1I GCAGC 7 cut(s) 146, 168, 232, 555, 681, 1786, 1895
BstV2I GAAGAC 4 cut(s) 99, 970, 1065, 1258
BstX2I RGATCY 1 cut(s) 819
BstYI RGATCY 1 cut(s) 819
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 1 cut(s) 2111
BsuTUI ATCGAT 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 742
BtrI CACGTC 1 cut(s) 1471
BtsCI GGATG 5 cut(s) 737, 1480, 1663, 1713, 1806
BtsI GCAGTG 1 cut(s) 1678
BveI ACCTGC 1 cut(s) 961
Cac8I GCNNGC 6 cut(s) 218, 624, 1346, 1804, 1980, 2071
CciI TCATGA 1 cut(s) 1111
Cfr13I GGNCC 1 cut(s) 353
ClaI ATCGAT 1 cut(s) 195
Csp6I GTAC 6 cut(s) 99, 289, 701, 805, 1292, 1666
CviQI GTAC 6 cut(s) 99, 289, 701, 805, 1292, 1666
DdeI CTNAG 6 cut(s) 402, 453, 573, 776, 1295, 1926
Eam1104I CTCTTC 2 cut(s) 748, 1656
EarI CTCTTC 2 cut(s) 748, 1656
Eco130I CCWWGG 3 cut(s) 441, 1235, 1842
Eco31I GGTCTC 3 cut(s) 656, 1512, 2066
Eco32I GATATC 2 cut(s) 1444, 1618
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 3 cut(s) 1035, 1854, 2043
EcoO109I RGGNCCY 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 2 cut(s) 355, 830
EcoRV GATATC 2 cut(s) 1444, 1618
EcoT14I CCWWGG 3 cut(s) 441, 1235, 1842
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 3 cut(s) 441, 1235, 1842
Esp3I CGTCTC 2 cut(s) 1461, 2083
FalI AAGNNNNNCTT 4 cut(s) 1014, 1046, 1795, 1827
FaqI GGGAC 4 cut(s) 538, 813, 1649, 1823
FbaI TGATCA 1 cut(s) 1527
FblI GTMKAC 2 cut(s) 981, 1686
Fnu4HI GCNGC 8 cut(s) 157, 160, 221, 321, 544, 670, 1800, 1884
FokI GGATG 5 cut(s) 724, 1487, 1670, 1720, 1793
Fsp4HI GCNGC 8 cut(s) 157, 160, 221, 321, 544, 670, 1800, 1884
FspBI CTAG 4 cut(s) 372, 1733, 1835, 1979
GluI GCNGC 8 cut(s) 157, 160, 221, 321, 544, 670, 1800, 1884
GsuI CTGGAG 2 cut(s) 345, 492
HaeIII GGCC 1 cut(s) 2111
HapII CCGG 2 cut(s) 747, 1463
HincII GTYRAC 1 cut(s) 1687
HindII GTYRAC 1 cut(s) 1687
HindIII AAGCTT 1 cut(s) 2071
HpaII CCGG 2 cut(s) 747, 1463
HphI GGTGA 3 cut(s) 317, 341, 1004
Hpy166II GTNNAC 3 cut(s) 332, 982, 1687
Hpy8I GTNNAC 3 cut(s) 332, 982, 1687
HpyAV CCTTC 4 cut(s) 407, 1362, 1821, 2126
HpyCH4III ACNGT 5 cut(s) 58, 251, 931, 1098, 2053
HpyCH4IV ACGT 2 cut(s) 1261, 1470
HpyCH4V TGCA 9 cut(s) 23, 140, 626, 718, 911, 1183, 1802, 2049, 2069
HpyF10VI GCNNNNNNNGC 5 cut(s) 1757, 1853, 1862, 1871, 1880
HpyF3I CTNAG 6 cut(s) 402, 453, 573, 776, 1295, 1926
HpySE526I ACGT 2 cut(s) 1261, 1470
Ksp22I TGATCA 1 cut(s) 1527
LmnI GCTCC 4 cut(s) 167, 248, 1594, 1679
Lsp1109I GCAGC 7 cut(s) 146, 168, 232, 555, 681, 1786, 1895
LweI GCATC 3 cut(s) 635, 765, 1815
MaeI CTAG 4 cut(s) 372, 1733, 1835, 1979
MaeII ACGT 2 cut(s) 1261, 1470
MaeIII GTNAC 4 cut(s) 992, 1330, 1546, 1596
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 1 cut(s) 819
MhlI GDGCHC 2 cut(s) 397, 943
MlyI GAGTC 6 cut(s) 78, 215, 317, 413, 596, 930
MmeI TCCRAC 3 cut(s) 270, 1188, 1602
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 1029
MseI TTAA 6 cut(s) 435, 509, 1125, 1280, 1556, 1878
MslI CAYNNNNRTG 2 cut(s) 719, 2054
MspA1I CMGCKG 2 cut(s) 159, 1799
MspI CCGG 2 cut(s) 747, 1463
MspR9I CCNGG 4 cut(s) 357, 748, 832, 1464
MunI CAATTG 1 cut(s) 113
MvaI CCWGG 2 cut(s) 357, 832
MwoI GCNNNNNNNGC 5 cut(s) 1757, 1853, 1862, 1871, 1880
NciI CCSGG 2 cut(s) 748, 1464
NheI GCTAGC 1 cut(s) 1978
NlaIV GGNNCC 3 cut(s) 354, 394, 942
NmuCI GTSAC 3 cut(s) 992, 1330, 1596
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 5 cut(s) 266, 899, 911, 1304, 1348
PaeI GCATGC 1 cut(s) 1348
PagI TCATGA 1 cut(s) 1111
PasI CCCWGGG 1 cut(s) 831
PciI ACATGT 2 cut(s) 895, 1300
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 5 cut(s) 197, 593, 1459, 1478, 1604
PfoI TCCNGGA 1 cut(s) 1462
PkrI GCNGC 8 cut(s) 158, 161, 222, 322, 545, 671, 1801, 1885
PleI GAGTC 6 cut(s) 78, 214, 316, 412, 595, 929
PpsI GAGTC 6 cut(s) 78, 214, 316, 412, 595, 929
PpuMI RGGWCCY 1 cut(s) 353
PscI ACATGT 2 cut(s) 895, 1300
PshBI ATTAAT 1 cut(s) 1125
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 355, 830
PspGI CCWGG 2 cut(s) 355, 830
PspN4I GGNNCC 3 cut(s) 354, 394, 942
PspPI GGNCC 1 cut(s) 353
PspPPI RGGWCCY 1 cut(s) 353
PsuI RGATCY 1 cut(s) 819
PvuII CAGCTG 2 cut(s) 159, 1799
RsaI GTAC 6 cut(s) 100, 290, 702, 806, 1293, 1667
RsaNI GTAC 6 cut(s) 99, 289, 701, 805, 1292, 1666
RseI CAYNNNNRTG 2 cut(s) 719, 2054
SalI GTCGAC 1 cut(s) 1685
SaqAI TTAA 6 cut(s) 435, 509, 1125, 1280, 1556, 1878
SatI GCNGC 8 cut(s) 157, 160, 221, 321, 544, 670, 1800, 1884
Sau96I GGNCC 1 cut(s) 353
ScaI AGTACT 3 cut(s) 100, 290, 1293
SchI GAGTC 6 cut(s) 78, 215, 317, 413, 596, 930
ScrFI CCNGG 4 cut(s) 357, 748, 832, 1464
SduI GDGCHC 2 cut(s) 397, 943
SfaNI GCATC 3 cut(s) 635, 765, 1815
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 719, 2054
SphI GCATGC 1 cut(s) 1348
SsiI CCGC 1 cut(s) 320
SspMI CTAG 4 cut(s) 372, 1733, 1835, 1979
StyD4I CCNGG 4 cut(s) 355, 746, 830, 1462
StyI CCWWGG 3 cut(s) 441, 1235, 1842
TaaI ACNGT 5 cut(s) 58, 251, 931, 1098, 2053
TaiI ACGT 2 cut(s) 1264, 1473
TaqI TCGA 3 cut(s) 195, 1392, 1686
TatI WGTACW 5 cut(s) 98, 288, 804, 1291, 1665
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 5 cut(s) 197, 593, 1459, 1478, 1604
Tru1I TTAA 6 cut(s) 435, 509, 1125, 1280, 1556, 1878
Tru9I TTAA 6 cut(s) 435, 509, 1125, 1280, 1556, 1878
TseFI GTSAC 3 cut(s) 992, 1330, 1596
TseI GCWGC 7 cut(s) 156, 159, 220, 543, 669, 1799, 1883
Tsp45I GTSAC 3 cut(s) 992, 1330, 1596
TspGWI ACGGA 4 cut(s) 668, 815, 1070, 1584
VpaK11BI GGWCC 1 cut(s) 353
VspI ATTAAT 1 cut(s) 1125
XapI RAATTY 5 cut(s) 854, 1043, 1136, 1276, 1541
XceI RCATGY 5 cut(s) 266, 899, 911, 1304, 1348
XmiI GTMKAC 2 cut(s) 981, 1686
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 4 cut(s) 372, 1733, 1835, 1979
ZrmI AGTACT 3 cut(s) 100, 290, 1293
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.