Prupe.4G171600_v2.0.a1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
10137035 .. 10142276
5242 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G171600.2

Sequence Viewer

Length: 2178 bp
ATGAGCAACATCATCACCAAAACTGCATACTGGGTTTTGGTTCTTCTTGTTATAATAGTCCAAGTCCGAGGCCGTTATTTTAGATTGGTTTCAGATGGTGAAACAGATCATCATCATCATCCTCATAATCAAAATCAAAGCAGCAGCAGCTCCCTGTTGCTTTTCAAAGGAATTGATTCTGCAGAAGAGGAGACATGTGAGCAGCTTTATGGGTTCTTGCCATGCTCCAACAGTGTGTATGGGCAAGTGTTTCTGATGGTGGTTTATGAGTTCTTGCTGTTTCATGGAGAGTCTTATTTGGCTGCTGGGGGTGAGCAGATTTTCCAGATTTTGGGTCCTGGTGTCTTTGGTGCCAGTGCATTTCATGTCCTTGGTGCCCTTCCTGAGTCTCTTTTACTTCTTGCTTCTGGACTTTTTAACTCCAAGGACATTGCTGCGGAATATGTGTATACTGGAGTTGGGTTGTTGGCTGGAACATCAATTTTGCTCTTAACAATACTTTGGGGGACTTGTGTAATTGTCGGCAGCCAAGACTTTCCAAATGAACTCAGCTCTGACTCTGAGGCTTCCAAGGATTCAATTTCCTCTCCACCTTTATCATGGAAAAGACTACCTGCATCCTTGACAGGTTGTGGTATTACTACGGATGTAGAGACCAGCCGCCTTGCAAGGATTATGATTTGTTCAGGAGCACCATTTCTTATAATGCAAATTGCAAATATCTTCCAATCTTCTTCCAAGGAACGCATTGCCATCTTGATTGCTCTCTGTGTTTCTGTTTTCTTCCTTTTATTGTACTTTATTTATCAGATCTTCCAGCCCTGGGTTCAAAAAAGAAGATTAGAGTTTGTCAAACATGGGCATTTGGTGTCAAGCATTTTACAGCATGTACAAAAACATGCACTAGGGAGACTCCTCACTGTCCAAGGGGCACCGAATTTATATGCTATCAGAAGGCTATTTGAGGAAGTGGATGAAGATGGTGACAATTATATATCACTTTCTGAAGTGAAAGAACTTCTCCTTGAAATCAAATTCATATCAACAGAAGACGATAAGGATAAAGGAACAGCAGAAGTGATGAAACAGTTTGACCTGGATCGTGATGGGAAAATCACTAAAGATGAATTCATCAATGGCTTCACAAAGTGGATTGATGAGGTCAAGGCAGTGCATAAACAACATACCCAAAGATCGTTGGAGAACATATATGAGGTCTTTCAACCTTGGATTGAAAATAGGAGAAGAGAACGTGAAATGAAGAAGAATCTAATGTCAGAAGTACTAAGACATGTCCAAAGCAATTCACTTGGAAGCATTCTCACAGAAGATGGCATGCCTGATATACCAAATATTAGAAGGTTGTTTGAAAAGATTGATCTTGATGGAAATAATAATATATCGCAAGCAGAACTAAAAGAACTGATCGCGGATATCAAGTTTGGTAAGATTCCAGGGGACATGGATGAATCAGTTGTGAAATTGATAGAAGAACTTGACACAAATGGAGACAAAATGATCAGTGAGGAAGAATTTGTTACTGGATTAACAAAATGGATAAATAAATCCAATGGTACTCAACCCCCCTCCTCGTCGCGTGAATCTGAAGACGATATCTATCAAAGAACTTGGGAAGAAACAGATAGGTTGGTGGATGAAGAGAAAGGCGAAGGTGGATCATCTGTAGACAAGTCCATATGGGCTTGGTTGAAGGCCATAACGTATTTGGTGCTTGGATTTGTTGTTTTAGCAGTTCTAGCAGAGCCTCTTATAGATAGTGTTCAGGCTTTTTCCGAAGCTGCAGGTATTCCTTCTTTCTGTGTAGCATTTGTGCTTGTCCCCTTGGCAACAAATGCTAGGCAAGCCACTTCAGCAATTAAAGCAGCTTCTAGAAAAACACCAAGAACCACTTCTTTGACATTTTCTGAGATTTATGGTGGAGTTTTTATGAACAATGTGCTGGGAGTTTCTGTGCTTCTAGCAATAATTTATGCTCGTGAAATGACATGGGAATTTTCTGCTGAATTATTGGTGGTTCTAATTGTCTGCACTGTAATGGGTATCATTGCAAGTTTTGTTTCAACCTTTTCTCTCTGGACAGCCTTCTTGACCTACCTGCTATACCCTGTTTCGTTGCTTTTAGTCTATCTTCTCAATGACGTTCTCAAATATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

726

Amino Acids

81.1

Weight (kDa)

5.07

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 53, 704
Acc36I ACCTGC 3 cut(s) 622, 1793, 2124
AccB1I GGYRCC 3 cut(s) 350, 374, 931
AccB7I CCANNNNNTGG 1 cut(s) 331
AccI GTMKAC 2 cut(s) 449, 1686
AccII CGCG 2 cut(s) 1430, 1597
AciI CCGC 3 cut(s) 437, 661, 1430
AclWI GGATC 2 cut(s) 1107, 1684
AcsI RAATTY 5 cut(s) 937, 1034, 1127, 1532, 2012
AcuI CTGAAG 3 cut(s) 1026, 1626, 1854
AdeI CACNNNGTG 1 cut(s) 1149
AfaI GTAC 4 cut(s) 797, 891, 1284, 1576
AfiI CCNNNNNNNGG 2 cut(s) 331, 823
AflIII ACRYGT 2 cut(s) 194, 1291
AgsI TTSAA 9 cut(s) 166, 579, 830, 1028, 1223, 1235, 1370, 1711, 2082
AjnI CCWGG 4 cut(s) 337, 821, 1095, 1453
AjuI GAANNNNNNNTTGG 2 cut(s) 1894, 1926
AluBI AGCT 5 cut(s) 150, 205, 552, 1799, 1886
AluI AGCT 5 cut(s) 150, 205, 552, 1799, 1886
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 5 cut(s) 185, 393, 647, 904, 1503
AlwI GGATC 2 cut(s) 1107, 1684
AoxI GGCC 2 cut(s) 70, 1713
ApeKI GCWGC 9 cut(s) 141, 144, 147, 202, 302, 434, 525, 1799, 1883
ApoI RAATTY 5 cut(s) 937, 1034, 1127, 1532, 2012
Asp700I GAANNNNTTC 2 cut(s) 175, 1909
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 4 cut(s) 7, 110, 323, 995
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 2 cut(s) 379, 934
BanI GGYRCC 3 cut(s) 350, 374, 931
BauI CACGAG 1 cut(s) 1995
BbsI GAAGAC 2 cut(s) 1056, 1614
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 9 cut(s) 153, 156, 159, 214, 289, 421, 537, 1786, 1895
BccI CCATC 7 cut(s) 89, 250, 761, 974, 1100, 1325, 1379
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 4 cut(s) 339, 823, 1097, 1455
BclI TGATCA 1 cut(s) 1518
BcoDI GTCTC 5 cut(s) 185, 393, 647, 904, 1503
BfaI CTAG 5 cut(s) 905, 1757, 1857, 1890, 1979
BfmI CTRYAG 3 cut(s) 180, 1683, 1800
BfuAI ACCTGC 3 cut(s) 622, 1793, 2124
BglII AGATCT 1 cut(s) 810
BmcAI AGTACT 1 cut(s) 1284
Bme1390I CCNGG 4 cut(s) 339, 823, 1097, 1455
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 4 cut(s) 336, 352, 376, 933
BmrFI CCNGG 4 cut(s) 339, 823, 1097, 1455
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 626
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 2 cut(s) 1056, 1614
BpmI CTGGAG 1 cut(s) 474
BsaBI GATNNNNATC 2 cut(s) 111, 1617
BsaI GGTCTC 1 cut(s) 647
BsaXI ACNNNNNCTCC 2 cut(s) 1956, 1986
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 823
Bse1I ACTGG 4 cut(s) 35, 354, 457, 1546
Bse3DI GCAATG 3 cut(s) 429, 747, 2064
Bse8I GATNNNNATC 2 cut(s) 111, 1617
BseBI CCWGG 4 cut(s) 339, 823, 1097, 1455
BseGI GGATG 6 cut(s) 118, 617, 652, 979, 1471, 1660
BseJI GATNNNNATC 2 cut(s) 111, 1617
BseLI CCNNNNNNNGG 2 cut(s) 331, 823
BseMI GCAATG 3 cut(s) 429, 747, 2064
BseMII CTCAG 4 cut(s) 375, 552, 562, 1917
BseNI ACTGG 4 cut(s) 35, 354, 457, 1546
BseRI GAGGAG 3 cut(s) 203, 905, 1579
BseSI GKGCMC 2 cut(s) 379, 934
BseXI GCAGC 9 cut(s) 153, 156, 159, 214, 289, 421, 537, 1786, 1895
BseYI CCCAGC 2 cut(s) 305, 1960
BsgI GTGCAG 1 cut(s) 2032
Bsh1236I CGCG 2 cut(s) 1430, 1597
BshFI GGCC 2 cut(s) 72, 1715
BshNI GGYRCC 3 cut(s) 350, 374, 931
BsiHKAI GWGCWC 1 cut(s) 694
BslFI GGGAC 3 cut(s) 520, 1472, 1823
BslI CCNNNNNNNGG 2 cut(s) 331, 823
BsmAI GTCTC 5 cut(s) 185, 393, 647, 904, 1503
BsmFI GGGAC 3 cut(s) 520, 1472, 1823
BsmI GAATGC 1 cut(s) 1317
BsnI GGCC 2 cut(s) 72, 1715
Bso31I GGTCTC 1 cut(s) 647
Bsp1286I GDGCHC 3 cut(s) 379, 694, 934
Bsp1407I TGTACA 1 cut(s) 889
Bsp143I GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
BspACI CCGC 3 cut(s) 437, 661, 1430
BspANI GGCC 2 cut(s) 72, 1715
BspCNI CTCAG 4 cut(s) 376, 553, 561, 1918
BspFNI CGCG 2 cut(s) 1430, 1597
BspLI GGNNCC 4 cut(s) 336, 352, 376, 933
BspMAI CTGCAG 2 cut(s) 184, 1804
BspMI ACCTGC 3 cut(s) 622, 1793, 2124
BspPI GGATC 2 cut(s) 1107, 1684
BspT107I GGYRCC 3 cut(s) 350, 374, 931
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 3 cut(s) 429, 747, 2064
BsrGI TGTACA 1 cut(s) 889
BsrI ACTGG 4 cut(s) 35, 354, 457, 1546
BssMI GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
BssNAI GTATAC 1 cut(s) 450
BssSI CACGAG 1 cut(s) 1995
BssT1I CCWWGG 7 cut(s) 370, 423, 570, 738, 925, 1226, 1842
Bst1107I GTATAC 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 1995
Bst2UI CCWGG 4 cut(s) 339, 823, 1097, 1455
Bst4CI ACNGT 4 cut(s) 233, 922, 1089, 2053
Bst6I CTCTTC 3 cut(s) 180, 1240, 1653
BstAPI GCANNNNNTGC 1 cut(s) 1853
BstAUI TGTACA 1 cut(s) 889
BstC8I GCNNGC 3 cut(s) 1337, 1407, 1863
BstDEI CTNAG 5 cut(s) 384, 548, 561, 1286, 1926
BstF5I GGATG 6 cut(s) 118, 617, 652, 979, 1471, 1660
BstFNI CGCG 2 cut(s) 1430, 1597
BstKTI GATC 8 cut(s) 109, 813, 1102, 1196, 1381, 1428, 1521, 1679
BstMAI GTCTC 5 cut(s) 185, 393, 647, 904, 1503
BstMBI GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
BstMWI GCNNNNNNNGC 6 cut(s) 147, 1757, 1853, 1862, 1871, 1880
BstNI CCWGG 4 cut(s) 339, 823, 1097, 1455
BstNSI RCATGY 5 cut(s) 198, 890, 902, 1295, 1339
BstSCI CCNGG 4 cut(s) 337, 821, 1095, 1453
BstSFI CTRYAG 3 cut(s) 180, 1683, 1800
BstSLI GKGCMC 2 cut(s) 379, 934
BstUI CGCG 2 cut(s) 1430, 1597
BstV1I GCAGC 9 cut(s) 153, 156, 159, 214, 289, 421, 537, 1786, 1895
BstV2I GAAGAC 2 cut(s) 1056, 1614
BstX2I RGATCY 1 cut(s) 810
BstYI RGATCY 1 cut(s) 810
BstZ17I GTATAC 1 cut(s) 450
BsuRI GGCC 2 cut(s) 72, 1715
BtsCI GGATG 6 cut(s) 118, 617, 652, 979, 1471, 1660
BtsI GCAGTG 1 cut(s) 1176
BtsIMutI CAGTG 6 cut(s) 238, 361, 918, 1176, 1528, 2049
BveI ACCTGC 3 cut(s) 622, 1793, 2124
Cac8I GCNNGC 3 cut(s) 1337, 1407, 1863
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 4 cut(s) 796, 890, 1283, 1575
CviQI GTAC 4 cut(s) 796, 890, 1283, 1575
DdeI CTNAG 5 cut(s) 384, 548, 561, 1286, 1926
DpnI GATC 8 cut(s) 108, 812, 1101, 1195, 1380, 1427, 1520, 1678
DpnII GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
DraIII CACNNNGTG 1 cut(s) 1149
Eam1104I CTCTTC 3 cut(s) 180, 1240, 1653
EarI CTCTTC 3 cut(s) 180, 1240, 1653
Eco130I CCWWGG 7 cut(s) 370, 423, 570, 738, 925, 1226, 1842
Eco31I GGTCTC 1 cut(s) 647
Eco32I GATATC 2 cut(s) 1435, 1615
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 3 cut(s) 1026, 1626, 1854
EcoO109I RGGNCCY 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 1127
EcoRII CCWGG 4 cut(s) 337, 821, 1095, 1453
EcoRV GATATC 2 cut(s) 1435, 1615
EcoT14I CCWWGG 7 cut(s) 370, 423, 570, 738, 925, 1226, 1842
ErhI CCWWGG 7 cut(s) 370, 423, 570, 738, 925, 1226, 1842
FalI AAGNNNNNCTT 2 cut(s) 1894, 1926
FaqI GGGAC 3 cut(s) 520, 1472, 1823
FauNDI CATATG 1 cut(s) 1697
FbaI TGATCA 1 cut(s) 1518
FblI GTMKAC 2 cut(s) 449, 1686
FokI GGATG 6 cut(s) 105, 604, 659, 986, 1478, 1667
FspBI CTAG 5 cut(s) 905, 1757, 1857, 1890, 1979
GsaI CCCAGC 2 cut(s) 309, 1964
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 2 cut(s) 72, 1715
HphI GGTGA 4 cut(s) 7, 110, 323, 995
Hpy166II GTNNAC 2 cut(s) 450, 1687
Hpy8I GTNNAC 2 cut(s) 450, 1687
Hpy99I CGWCG 1 cut(s) 1597
HpyAV CCTTC 7 cut(s) 389, 948, 1353, 1664, 1705, 1821, 2113
HpyCH4III ACNGT 4 cut(s) 233, 922, 1089, 2053
HpyCH4IV ACGT 3 cut(s) 1252, 1721, 2160
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 1757, 1853, 1862, 1871, 1880
HpyF3I CTNAG 5 cut(s) 384, 548, 561, 1286, 1926
HpySE526I ACGT 3 cut(s) 1252, 1721, 2160
Ksp22I TGATCA 1 cut(s) 1518
Kzo9I GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
LmnI GCTCC 3 cut(s) 155, 230, 689
Lsp1109I GCAGC 9 cut(s) 153, 156, 159, 214, 289, 421, 537, 1786, 1895
LweI GCATC 1 cut(s) 626
MaeI CTAG 5 cut(s) 905, 1757, 1857, 1890, 1979
MaeII ACGT 3 cut(s) 1252, 1721, 2160
MaeIII GTNAC 2 cut(s) 983, 1537
MalI GATC 8 cut(s) 108, 812, 1101, 1195, 1380, 1427, 1520, 1678
MboI GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
MflI RGATCY 1 cut(s) 810
MhlI GDGCHC 3 cut(s) 379, 694, 934
MlyI GAGTC 4 cut(s) 299, 395, 551, 906
MmeI TCCRAC 2 cut(s) 252, 1179
MroXI GAANNNNTTC 2 cut(s) 175, 1909
MseI TTAA 4 cut(s) 417, 491, 1547, 1878
MslI CAYNNNNRTG 1 cut(s) 2054
MspR9I CCNGG 4 cut(s) 339, 823, 1097, 1455
Mva1269I GAATGC 1 cut(s) 1317
MvaI CCWGG 4 cut(s) 339, 823, 1097, 1455
MvnI CGCG 2 cut(s) 1430, 1597
MwoI GCNNNNNNNGC 6 cut(s) 147, 1757, 1853, 1862, 1871, 1880
NdeI CATATG 1 cut(s) 1697
NdeII GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
NlaIV GGNNCC 4 cut(s) 336, 352, 376, 933
NmuCI GTSAC 1 cut(s) 983
NspI RCATGY 5 cut(s) 198, 890, 902, 1295, 1339
PaeI GCATGC 1 cut(s) 1339
PasI CCCWGGG 1 cut(s) 822
PciI ACATGT 2 cut(s) 194, 1291
PctI GAATGC 1 cut(s) 1317
PdmI GAANNNNTTC 2 cut(s) 175, 1909
PfeI GAWTC 6 cut(s) 176, 575, 1267, 1450, 1469, 1601
PflMI CCANNNNNTGG 1 cut(s) 331
PleI GAGTC 4 cut(s) 298, 394, 551, 906
PpsI GAGTC 4 cut(s) 298, 394, 551, 906
PpuMI RGGWCCY 1 cut(s) 335
PscI ACATGT 2 cut(s) 194, 1291
PsiI TTATAA 2 cut(s) 53, 704
Psp5II RGGWCCY 1 cut(s) 335
Psp6I CCWGG 4 cut(s) 337, 821, 1095, 1453
PspFI CCCAGC 2 cut(s) 305, 1960
PspGI CCWGG 4 cut(s) 337, 821, 1095, 1453
PspN4I GGNNCC 4 cut(s) 336, 352, 376, 933
PspPI GGNCC 1 cut(s) 335
PspPPI RGGWCCY 1 cut(s) 335
PstI CTGCAG 2 cut(s) 184, 1804
PsuI RGATCY 1 cut(s) 810
RsaI GTAC 4 cut(s) 797, 891, 1284, 1576
RsaNI GTAC 4 cut(s) 796, 890, 1283, 1575
RseI CAYNNNNRTG 1 cut(s) 2054
SaqAI TTAA 4 cut(s) 417, 491, 1547, 1878
Sau3AI GATC 8 cut(s) 106, 810, 1099, 1193, 1378, 1425, 1518, 1676
Sau96I GGNCC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 1284
SchI GAGTC 4 cut(s) 299, 395, 551, 906
ScrFI CCNGG 4 cut(s) 339, 823, 1097, 1455
SduI GDGCHC 3 cut(s) 379, 694, 934
SfaNI GCATC 1 cut(s) 626
SfcI CTRYAG 3 cut(s) 180, 1683, 1800
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 2054
SphI GCATGC 1 cut(s) 1339
SsiI CCGC 3 cut(s) 437, 661, 1430
SspI AATATT 1 cut(s) 1354
SspMI CTAG 5 cut(s) 905, 1757, 1857, 1890, 1979
StyD4I CCNGG 4 cut(s) 337, 821, 1095, 1453
StyI CCWWGG 7 cut(s) 370, 423, 570, 738, 925, 1226, 1842
TaaI ACNGT 4 cut(s) 233, 922, 1089, 2053
TaiI ACGT 3 cut(s) 1255, 1724, 2163
TatI WGTACW 3 cut(s) 795, 889, 1282
TauI GCSGC 1 cut(s) 663
TfiI GAWTC 6 cut(s) 176, 575, 1267, 1450, 1469, 1601
Tru1I TTAA 4 cut(s) 417, 491, 1547, 1878
Tru9I TTAA 4 cut(s) 417, 491, 1547, 1878
TscAI CASTG 6 cut(s) 238, 361, 925, 1176, 1528, 2056
TseFI GTSAC 1 cut(s) 983
TseI GCWGC 9 cut(s) 141, 144, 147, 202, 302, 434, 525, 1799, 1883
Tsp45I GTSAC 1 cut(s) 983
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 6 cut(s) 238, 361, 925, 1176, 1528, 2056
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 5 cut(s) 937, 1034, 1127, 1532, 2012
XbaI TCTAGA 1 cut(s) 1889
XceI RCATGY 5 cut(s) 198, 890, 902, 1295, 1339
XcmI CCANNNNNNNNNTGG 2 cut(s) 597, 1723
XmiI GTMKAC 2 cut(s) 449, 1686
XmnI GAANNNNTTC 2 cut(s) 175, 1909
XspI CTAG 5 cut(s) 905, 1757, 1857, 1890, 1979
ZrmI AGTACT 1 cut(s) 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.