Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002018.1

Orthogroup ID

OG0012596

Physical Location & Seq

Genomic Coordinates Reverse (-)

814 .. 2149

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcgagctccgactcggagaaaatcccggactcgaacttcggacagattctcggagtacaattaccatattctgagaacccaatcggagaaattggggtcgttgaaggcgaagggccgagtcagaggggaagaggaagaacacggcggtggagaggaggaggaaagtgacgacggtggatatacatgggtggagaggacgttgttagtgccttcatcagtattagtccaagtcagaggccgttcttttcgacatatcactactgttactactagtgctcaatcgatttcagacggtgttgatgatcaacatcatgatgttggattcaaccaaagtaatgggacgatcagaagctccttccaacttctcaaaggaattgacgccgagtctgaggagacctgcgaccaactgtacgggttcttgccgtgctcgaacagtgtttacgggcatgtgttcttgatggtggtgtatgagtacttgttgttccatggagagtcgtacttggcagccggaggtgagcagatcttcaagattctgggtcctggtgtcttcggtgctagtgctttccatgtcctcggcgccctcccagagtctttgttgcttcttggtacgtttaattttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 EF-hand_8 Na_Ca_ex

Protein Analysis

208

Amino Acids

23.12

Weight (kDa)

5.61

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012596)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18790
malus_domestica	MD03G1238300.v1.1 MD15G1340300.v1.1
prunus_persica	Prupe.4G171600_v2.0.a1 Prupe.4G171600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031621
rosa_laevigata	RLG00000033329
rosa_multiflora	Rmu_sc0002018.1_g000001 Rmu_sc0003681.1_g000001 Rmu_sc0014819.1_g000001 Rmu_sc0031913.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048660
rosa_rugosa	Rorug05G0127100 Rorug05G0127100
rosa_samantha	Rh5AG220900 Rh5BG220400 Rh5CG243800 Rh5DG225200
rosa_wichuraiana	Rw5G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	578
AciI	CCGC	1 cut(s)	147
AcyI	GRCGYC	2 cut(s)	381, 579
AfaI	GTAC	5 cut(s)	59, 413, 476, 500, 610
AgsI	TTSAA	4 cut(s)	106, 328, 529, 623
AhdI	GACNNNNNGTC	1 cut(s)	385
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	541
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	8, 354
AluI	AGCT	2 cut(s)	8, 354
Alw21I	GWGCWC	3 cut(s)	10, 280, 431
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	2 cut(s)	115, 238
ApeKI	GCWGC	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	115, 539
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	3 cut(s)	10, 280, 431
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	3 cut(s)	160, 225, 409
BciT130I	CCWGG	1 cut(s)	543
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	2 cut(s)	273, 558
BfoI	RGCGCY	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	28, 543
Bme18I	GGWCC	1 cut(s)	539
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	115, 539
BmiI	GGNNCC	2 cut(s)	540, 580
BmrFI	CCNGG	2 cut(s)	28, 543
BpiI	GAAGAC	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	309
BsaHI	GRCGYC	2 cut(s)	381, 579
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	487, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	543
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	487, 574
BseJI	GATNNNNATC	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	65, 381
BseRI	GAGGAG	3 cut(s)	170, 173, 407
BseXI	GCAGC	1 cut(s)	518
BshFI	GGCC	2 cut(s)	117, 240
BshNI	GGYRCC	1 cut(s)	578
BshVI	ATCGAT	1 cut(s)	284
BsiHKAI	GWGCWC	3 cut(s)	10, 280, 431
BsiSI	CCGG	2 cut(s)	28, 510
BslFI	GGGAC	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	117, 240
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	10, 280, 431
Bsp143I	GATC	3 cut(s)	304, 345, 522
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	117, 240
BspCNI	CTCAG	2 cut(s)	66, 382
BspDI	ATCGAT	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	540, 580
BspMI	ACCTGC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	487, 574
BssMI	GATC	3 cut(s)	304, 345, 522
BssNI	GRCGYC	2 cut(s)	381, 579
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	5 cut(s)	176, 265, 296, 411, 437
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	2 cut(s)	381, 579
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	74, 390
BstDSI	CCRYGG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	3 cut(s)	307, 348, 525
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	304, 345, 522
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	26, 541
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	522
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	522
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	117, 240
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	487
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	115, 539
ClaI	ATCGAT	1 cut(s)	284
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	5 cut(s)	58, 412, 475, 499, 609
CviAII	CATG	5 cut(s)	186, 314, 449, 488, 569
CviJI	RGCY	5 cut(s)	8, 117, 240, 354, 509
CviKI_1	RGCY	5 cut(s)	8, 117, 240, 354, 509
CviQI	GTAC	5 cut(s)	58, 412, 475, 499, 609
DdeI	CTNAG	2 cut(s)	74, 390
DinI	GGCGCC	1 cut(s)	580
DpnI	GATC	3 cut(s)	306, 347, 524
DpnII	GATC	3 cut(s)	304, 345, 522
DriI	GACNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	126
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	539
Eco53kI	GAGCTC	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	10
EgeI	GGCGCC	1 cut(s)	580
EheI	GGCGCC	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	5 cut(s)	189, 317, 452, 491, 572
FaiI	YATR	9 cut(s)	69, 183, 187, 255, 315, 450, 471, 489, 570
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	5 cut(s)	185, 313, 448, 487, 568
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	507
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	2 cut(s)	273, 558
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	117, 240
HapII	CCGG	2 cut(s)	28, 510
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	581
Hin1I	GRCGYC	2 cut(s)	381, 579
Hin1II	CATG	5 cut(s)	189, 317, 452, 491, 572
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HinfI	GANTC	9 cut(s)	13, 31, 48, 120, 324, 386, 494, 532, 590
HpaII	CCGG	2 cut(s)	28, 510
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188III	TCNNGA	3 cut(s)	314, 457, 529
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	100, 106, 222, 367
HpyCH4III	ACNGT	5 cut(s)	176, 265, 296, 411, 437
HpyCH4IV	ACGT	2 cut(s)	200, 611
HpyF3I	CTNAG	2 cut(s)	74, 390
HpySE526I	ACGT	2 cut(s)	200, 611
Hsp92I	GRCGYC	2 cut(s)	381, 579
Hsp92II	CATG	5 cut(s)	189, 317, 452, 491, 572
HspAI	GCGC	1 cut(s)	579
KasI	GGCGCC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	304, 345, 522
LmnI	GCTCC	2 cut(s)	13, 359
LpnPI	CCDG	7 cut(s)	41, 412, 521, 523, 528, 555, 600
Lsp1109I	GCAGC	1 cut(s)	518
MaeI	CTAG	2 cut(s)	273, 558
MaeII	ACGT	2 cut(s)	200, 611
MaeIII	GTNAC	2 cut(s)	167, 265
MalI	GATC	3 cut(s)	306, 347, 524
MboI	GATC	3 cut(s)	304, 345, 522
MboII	GAAGA	4 cut(s)	143, 149, 517, 541
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	3 cut(s)	10, 280, 431
MluCI	AATT	4 cut(s)	61, 92, 375, 616
Mly113I	GGCGCC	1 cut(s)	579
MlyI	GAGTC	6 cut(s)	7, 25, 129, 395, 503, 599
MmeI	TCCRAC	3 cut(s)	35, 301, 385
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	2 cut(s)	147, 315
MspI	CCGG	2 cut(s)	28, 510
MspR9I	CCNGG	2 cut(s)	28, 543
MvaI	CCWGG	1 cut(s)	543
NarI	GGCGCC	1 cut(s)	579
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	3 cut(s)	304, 345, 522
NlaIII	CATG	5 cut(s)	189, 317, 452, 491, 572
NlaIV	GGNNCC	2 cut(s)	540, 580
NmeAIII	GCCGAG	3 cut(s)	143, 409, 555
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	147
PagI	TCATGA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	48, 324, 532
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	6 cut(s)	7, 25, 128, 394, 502, 598
PluTI	GGCGCC	1 cut(s)	582
PpsI	GAGTC	6 cut(s)	7, 25, 128, 394, 502, 598
PpuMI	RGGWCCY	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	540, 580
PspPI	GGNCC	2 cut(s)	115, 539
PspPPI	RGGWCCY	1 cut(s)	539
PsrI	GAACNNNNNNTAC	4 cut(s)	425, 457, 467, 499
PsuI	RGATCY	1 cut(s)	522
RsaI	GTAC	5 cut(s)	59, 413, 476, 500, 610
RsaNI	GTAC	5 cut(s)	58, 412, 475, 499, 609
RseI	CAYNNNNRTG	2 cut(s)	147, 315
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	3 cut(s)	304, 345, 522
Sau96I	GGNCC	2 cut(s)	115, 539
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	6 cut(s)	7, 25, 129, 395, 503, 599
ScrFI	CCNGG	2 cut(s)	28, 543
SduI	GDGCHC	3 cut(s)	10, 280, 431
SetI	ASST	6 cut(s)	10, 203, 356, 401, 517, 614
SfoI	GGCGCC	1 cut(s)	580
SinI	GGWCC	1 cut(s)	539
SmiMI	CAYNNNNRTG	2 cut(s)	147, 315
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	4 cut(s)	61, 92, 375, 616
SsiI	CCGC	1 cut(s)	147
SspDI	GGCGCC	1 cut(s)	578
SspMI	CTAG	2 cut(s)	273, 558
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	26, 541
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	5 cut(s)	176, 265, 296, 411, 437
TaiI	ACGT	2 cut(s)	203, 614
TaqI	TCGA	4 cut(s)	34, 250, 284, 431
TasI	AATT	4 cut(s)	61, 92, 375, 616
TatI	WGTACW	2 cut(s)	57, 474
TfiI	GAWTC	3 cut(s)	48, 324, 532
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	539
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	2 cut(s)	273, 558
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.