Rmu_sc0014819.1_g000001

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014819.1
OG0012596
Physical Location & Seq
Reverse (-)
813 .. 2138
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014819.1_g000001.1.cds

Sequence Viewer

Length: 522 bp
atgcgagctctgactcggagaaaatcctggactcgaacttcagacagattctcggagtacaattaccatattctgagaacccgatcggagaaattgcggtcattgaaggcgaagatgaagtccgtattagtccaagtcagaggccgttcttttcgacatattactactgttactactagtgctcaatcgatttcagacggtgttgatgatcatcatcatgatgttggattcaaccaaggtaatgggacgatcagaacctccttccaacttctcaaaggaattgacgccgagtctgaggagacctgcgaccaactgtacgggttcttgccgtgctcgaacagtgtttacgggcatgtgttcttgatggtggtgtatgagtacttgttgttccatggagagtcgtacttggcagccggaggtgagcagatcttcaagattctgggtcctggtgtcttcggtgctagtgctttccatgtcctcggcgccctcccagagtctttgttgcttcttggtacgtattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 EF-hand_8 Na_Ca_ex

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

8.91

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 482
AciI CCGC 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 2 cut(s) 285, 483
AfaI GTAC 5 cut(s) 59, 317, 380, 404, 514
AgsI TTSAA 3 cut(s) 106, 232, 433
AhdI GACNNNNNGTC 1 cut(s) 289
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 2 cut(s) 26, 445
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw21I GWGCWC 3 cut(s) 10, 184, 335
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 410
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 3 cut(s) 10, 184, 335
BbvI GCAGC 1 cut(s) 422
BccI CCATC 1 cut(s) 358
BceAI ACGGC 2 cut(s) 129, 313
BciT130I CCWGG 2 cut(s) 28, 447
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 2 cut(s) 177, 462
BfoI RGCGCY 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 311
BglII AGATCT 1 cut(s) 426
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 28, 447
Bme18I GGWCC 1 cut(s) 443
BmeRI GACNNNNNGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 2 cut(s) 444, 484
BmrFI CCNGG 2 cut(s) 28, 447
BpiI GAAGAC 1 cut(s) 445
Bsa29I ATCGAT 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 516
BsaBI GATNNNNATC 2 cut(s) 210, 213
BsaHI GRCGYC 2 cut(s) 285, 483
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 235, 391, 478
Bse8I GATNNNNATC 2 cut(s) 210, 213
BseBI CCWGG 2 cut(s) 28, 447
BseCI ATCGAT 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 235, 391, 478
BseJI GATNNNNATC 2 cut(s) 210, 213
BseMII CTCAG 2 cut(s) 65, 285
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 3 cut(s) 10, 184, 335
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 3 cut(s) 10, 184, 335
Bsp143I GATC 4 cut(s) 83, 208, 249, 426
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 2 cut(s) 66, 286
BspDI ATCGAT 1 cut(s) 188
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 444, 484
BspMI ACCTGC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 235, 391, 478
BssMI GATC 4 cut(s) 83, 208, 249, 426
BssNI GRCGYC 2 cut(s) 285, 483
BssT1I CCWWGG 2 cut(s) 235, 391
Bst2UI CCWGG 2 cut(s) 28, 447
Bst4CI ACNGT 4 cut(s) 169, 200, 315, 341
BstACI GRCGYC 2 cut(s) 285, 483
BstBAI YACGTR 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 74, 294
BstDSI CCRYGG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 4 cut(s) 86, 211, 252, 429
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 4 cut(s) 83, 208, 249, 426
BstMCI CGRYCG 1 cut(s) 86
BstNI CCWGG 2 cut(s) 28, 447
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 26, 445
BstSNI TACGTA 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 422
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 426
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 426
Bsu15I ATCGAT 1 cut(s) 188
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 443
ClaI ATCGAT 1 cut(s) 188
CseI GACGC 1 cut(s) 293
Csp6I GTAC 5 cut(s) 58, 316, 379, 403, 513
CviAII CATG 4 cut(s) 218, 353, 392, 473
CviJI RGCY 3 cut(s) 8, 144, 413
CviKI_1 RGCY 3 cut(s) 8, 144, 413
CviQI GTAC 5 cut(s) 58, 316, 379, 403, 513
DdeI CTNAG 2 cut(s) 74, 294
DinI GGCGCC 1 cut(s) 484
DpnI GATC 4 cut(s) 85, 210, 251, 428
DpnII GATC 4 cut(s) 83, 208, 249, 426
DriI GACNNNNNGTC 1 cut(s) 289
Eam1105I GACNNNNNGTC 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 8
Eco105I TACGTA 1 cut(s) 516
Eco130I CCWWGG 2 cut(s) 235, 391
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 26, 445
EcoT14I CCWWGG 2 cut(s) 235, 391
EcoT38I GRGCYC 1 cut(s) 10
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
ErhI CCWWGG 2 cut(s) 235, 391
FaeI CATG 4 cut(s) 221, 356, 395, 476
FaiI YATR 7 cut(s) 69, 159, 219, 354, 375, 393, 474
FaqI GGGAC 1 cut(s) 259
FatI CATG 4 cut(s) 217, 352, 391, 472
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 411
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 2 cut(s) 177, 462
GlaI GCGC 1 cut(s) 484
GluI GCNGC 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 485
Hin1I GRCGYC 2 cut(s) 285, 483
Hin1II CATG 4 cut(s) 221, 356, 395, 476
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 8 cut(s) 13, 31, 48, 228, 290, 398, 436, 494
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 218, 361, 433
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 100, 271
HpyCH4III ACNGT 4 cut(s) 169, 200, 315, 341
HpyCH4IV ACGT 1 cut(s) 515
HpyF3I CTNAG 2 cut(s) 74, 294
HpySE526I ACGT 1 cut(s) 515
Hsp92I GRCGYC 2 cut(s) 285, 483
Hsp92II CATG 4 cut(s) 221, 356, 395, 476
HspAI GCGC 1 cut(s) 483
KasI GGCGCC 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 83, 208, 249, 426
LpnPI CCDG 8 cut(s) 13, 40, 316, 425, 427, 432, 459, 504
Lsp1109I GCAGC 1 cut(s) 422
MaeI CTAG 2 cut(s) 177, 462
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 1 cut(s) 169
MalI GATC 4 cut(s) 85, 210, 251, 428
MboI GATC 4 cut(s) 83, 208, 249, 426
MboII GAAGA 3 cut(s) 124, 421, 445
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 3 cut(s) 10, 184, 335
MluCI AATT 3 cut(s) 61, 92, 279
Mly113I GGCGCC 1 cut(s) 483
MlyI GAGTC 5 cut(s) 7, 25, 299, 407, 503
MmeI TCCRAC 2 cut(s) 205, 289
MnlI CCTC 6 cut(s) 134, 268, 289, 410, 488, 497
MseI TTAA 1 cut(s) 520
MslI CAYNNNNRTG 2 cut(s) 216, 219
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 2 cut(s) 28, 447
MvaI CCWGG 2 cut(s) 28, 447
NarI GGCGCC 1 cut(s) 483
NcoI CCATGG 1 cut(s) 391
NdeII GATC 4 cut(s) 83, 208, 249, 426
NlaIII CATG 4 cut(s) 221, 356, 395, 476
NlaIV GGNNCC 2 cut(s) 444, 484
NmeAIII GCCGAG 2 cut(s) 313, 459
NspI RCATGY 1 cut(s) 356
PagI TCATGA 1 cut(s) 217
PfeI GAWTC 3 cut(s) 48, 228, 436
PfoI TCCNGGA 1 cut(s) 26
PkrI GCNGC 1 cut(s) 412
Ple19I CGATCG 1 cut(s) 86
PleI GAGTC 5 cut(s) 7, 25, 298, 406, 502
PluTI GGCGCC 1 cut(s) 486
PpsI GAGTC 5 cut(s) 7, 25, 298, 406, 502
Ppu21I YACGTR 1 cut(s) 516
PpuMI RGGWCCY 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 26, 445
PspGI CCWGG 2 cut(s) 26, 445
PspN4I GGNNCC 2 cut(s) 444, 484
PspPI GGNCC 1 cut(s) 443
PspPPI RGGWCCY 1 cut(s) 443
PsrI GAACNNNNNNTAC 4 cut(s) 329, 361, 371, 403
PsuI RGATCY 1 cut(s) 426
PvuI CGATCG 1 cut(s) 86
RsaI GTAC 5 cut(s) 59, 317, 380, 404, 514
RsaNI GTAC 5 cut(s) 58, 316, 379, 403, 513
RseI CAYNNNNRTG 2 cut(s) 216, 219
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 520
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 4 cut(s) 83, 208, 249, 426
Sau96I GGNCC 1 cut(s) 443
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 5 cut(s) 7, 25, 299, 407, 503
ScrFI CCNGG 2 cut(s) 28, 447
SduI GDGCHC 3 cut(s) 10, 184, 335
SetI ASST 6 cut(s) 10, 241, 260, 305, 421, 518
SfoI GGCGCC 1 cut(s) 484
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 2 cut(s) 216, 219
SnaBI TACGTA 1 cut(s) 516
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 3 cut(s) 61, 92, 279
SsiI CCGC 1 cut(s) 97
SspDI GGCGCC 1 cut(s) 482
SspMI CTAG 2 cut(s) 177, 462
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 26, 445
StyI CCWWGG 2 cut(s) 235, 391
TaaI ACNGT 4 cut(s) 169, 200, 315, 341
TaiI ACGT 1 cut(s) 518
TaqI TCGA 4 cut(s) 34, 154, 188, 335
TasI AATT 3 cut(s) 61, 92, 279
TatI WGTACW 2 cut(s) 57, 378
TfiI GAWTC 3 cut(s) 48, 228, 436
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TscAI CASTG 1 cut(s) 346
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 443
XceI RCATGY 1 cut(s) 356
XspI CTAG 2 cut(s) 177, 462
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.