Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0017657

Physical Location & Seq

Genomic Coordinates Reverse (-)

3884796 .. 3886840

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1055000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCTTGTGCTGTTTTTTCACAGAATAATCATTATTCGATTTCGGTTTTATTTTTTCAAGTGATAAAATTGTGGGCAAAGGCATGTCTCTGCGTAGGGCTCTCCTTCTTCCTCTTAATTTGCATCCCAATTTTAATCCTTCTGACTCTTCCATTTTCCATTTCTTTTTTATGGGCACTATTTTTCTGTAAGATTTTATGTTTCTTCGGTTTGTGCCCCGAATTTAGATTTCTAGAAATGAAGTTTTTGGTAAATTACTTGTCCTCTGCTGCAACAAAATTCACAGGAAGCAGCAAATCCAATCCCAACCATGGTCATCATCATCATCATCATAATAATAATCACCATTATAAGATTATTAACGATAATAATGATGAGTTAATAGCCAAGACTCTTGAGGATAAGCAGGAGAGTGTTCAGTTGGATCCGTCGGAGCTTCCTTCTTTATATGAATCCGATTTCGATGTTGAAGATGATCATCATCAAGAGATCCATCAAGAGATCAAAGACAAAGGGGTAAACAATGGTATGAGTCAAATTTGCACGTATGAGGAAGGCTCGTGGCAAATCCTGGTCTCAAAGCCTCGCACAAGGAGAGAACCTCAATCGTTCTATGATGTGTTGTCGTTTTGGAAGAGCAAAGAGAAAGGAGATGCGGATTTAGAAGAAATTACGAATCCAAGATCCACTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

26.74

Weight (kDa)

5.87

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29220
malus_domestica	MD16G1055000.v1.1
prunus_persica	Prupe.1G294400_v2.0.a1
rosa_laevigata	RLG00000006451
rosa_multiflora	Rmu_sc0004339.1_g000030
rosa_roxburghii	Rroxscaffold_5G00378410
rosa_rugosa	Rorug04G0299100
rosa_samantha	Rh4AG353900 Rh4BG363800 Rh4CG378000 Rh4DG357800
rosa_wichuraiana	Rw4G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	4 cut(s)	419, 432, 484, 678
AcsI	RAATTY	3 cut(s)	221, 278, 537
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	59, 470
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	92, 580
AlwI	GGATC	4 cut(s)	419, 432, 484, 678
ApeKI	GCWGC	2 cut(s)	269, 291
ApoI	RAATTY	3 cut(s)	221, 278, 537
AsuHPI	GGTGA	1 cut(s)	335
BaeGI	GKGCMC	2 cut(s)	178, 218
BamHI	GGATCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	559
BbvI	GCAGC	2 cut(s)	256, 303
BccI	CCATC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	572
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	92, 580
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	270, 292
BlsI	GCNGC	2 cut(s)	271, 293
Bme1390I	CCNGG	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	2 cut(s)	132, 643
BplI	GAGNNNNNCTC	4 cut(s)	542, 574, 586, 618
BpuEI	CTTGAG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	546
BsaBI	GATNNNNATC	2 cut(s)	477, 480
BsaI	GGTCTC	1 cut(s)	580
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse8I	GATNNNNATC	2 cut(s)	477, 480
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	2 cut(s)	477, 480
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseSI	GKGCMC	2 cut(s)	178, 218
BseXI	GCAGC	2 cut(s)	256, 303
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	92, 580
Bso31I	GGTCTC	1 cut(s)	580
Bsp1286I	GDGCHC	3 cut(s)	102, 178, 218
Bsp143I	GATC	5 cut(s)	424, 475, 489, 501, 683
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	1 cut(s)	656
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	4 cut(s)	419, 432, 484, 678
BspQI	GCTCTTC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	5 cut(s)	424, 475, 489, 501, 683
BssSI	CACGAG	1 cut(s)	559
BssT1I	CCWWGG	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	2 cut(s)	153, 629
BstBAI	YACGTR	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	5 cut(s)	427, 478, 492, 504, 686
BstMAI	GTCTC	2 cut(s)	92, 580
BstMBI	GATC	5 cut(s)	424, 475, 489, 501, 683
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	570
BstSLI	GKGCMC	2 cut(s)	178, 218
BstV1I	GCAGC	2 cut(s)	256, 303
BstX2I	RGATCY	3 cut(s)	424, 489, 683
BstYI	RGATCY	3 cut(s)	424, 489, 683
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	687
CviAII	CATG	2 cut(s)	84, 311
CviJI	RGCY	5 cut(s)	100, 386, 436, 558, 583
CviKI_1	RGCY	5 cut(s)	100, 386, 436, 558, 583
DpnI	GATC	5 cut(s)	426, 477, 491, 503, 685
DpnII	GATC	5 cut(s)	424, 475, 489, 501, 683
Eam1104I	CTCTTC	2 cut(s)	153, 629
EarI	CTCTTC	2 cut(s)	153, 629
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	2 cut(s)	87, 314
FatI	CATG	2 cut(s)	83, 310
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	270, 292
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	270, 292
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	2 cut(s)	270, 292
Hin1II	CATG	2 cut(s)	87, 314
HinfI	GANTC	5 cut(s)	145, 391, 452, 532, 676
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	3 cut(s)	144, 433, 457
Hpy188III	TCNNGA	4 cut(s)	233, 395, 485, 497
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	433
HpyAV	CCTTC	4 cut(s)	115, 149, 450, 548
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	3 cut(s)	123, 272, 543
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	2 cut(s)	87, 314
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	5 cut(s)	424, 475, 489, 501, 683
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	4 cut(s)	270, 392, 557, 584
Lsp1109I	GCAGC	2 cut(s)	256, 303
LweI	GCATC	2 cut(s)	132, 643
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	545
MalI	GATC	5 cut(s)	426, 477, 491, 503, 685
MboI	GATC	5 cut(s)	424, 475, 489, 501, 683
MboII	GAAGA	6 cut(s)	100, 140, 196, 482, 646, 677
MflI	RGATCY	3 cut(s)	424, 489, 683
MhlI	GDGCHC	3 cut(s)	102, 178, 218
MluCI	AATT	8 cut(s)	68, 117, 129, 221, 253, 278, 537, 669
MlyI	GAGTC	3 cut(s)	139, 385, 541
MmeI	TCCRAC	2 cut(s)	402, 411
MnlI	CCTC	6 cut(s)	122, 274, 391, 544, 594, 612
MseI	TTAA	4 cut(s)	116, 134, 360, 380
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	5 cut(s)	424, 475, 489, 501, 683
NlaIII	CATG	2 cut(s)	87, 314
NlaIV	GGNNCC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	452, 676
PkrI	GCNGC	2 cut(s)	271, 293
PleI	GAGTC	3 cut(s)	139, 385, 540
PpsI	GAGTC	3 cut(s)	139, 385, 540
Ppu21I	YACGTR	1 cut(s)	546
PsiI	TTATAA	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	426
PsuI	RGATCY	3 cut(s)	424, 489, 683
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	4 cut(s)	116, 134, 360, 380
SatI	GCNGC	2 cut(s)	270, 292
Sau3AI	GATC	5 cut(s)	424, 475, 489, 501, 683
SchI	GAGTC	3 cut(s)	139, 385, 541
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	3 cut(s)	102, 178, 218
SetI	ASST	3 cut(s)	438, 548, 604
SfaNI	GCATC	2 cut(s)	132, 643
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	8 cut(s)	68, 117, 129, 221, 253, 278, 537, 669
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	2 cut(s)	38, 462
TasI	AATT	8 cut(s)	68, 117, 129, 221, 253, 278, 537, 669
TfiI	GAWTC	2 cut(s)	452, 676
Tru1I	TTAA	4 cut(s)	116, 134, 360, 380
Tru9I	TTAA	4 cut(s)	116, 134, 360, 380
TscAI	CASTG	1 cut(s)	694
TseI	GCWGC	2 cut(s)	269, 291
TspDTI	ATGAA	2 cut(s)	254, 465
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	694
XapI	RAATTY	3 cut(s)	221, 278, 537
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.