Rmu_sc0004339.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004339.1
OG0017657
Physical Location & Seq
Reverse (-)
114947 .. 115439
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004339.1_g000030.1.cds

Sequence Viewer

Length: 396 bp
atgaagtttttcagattctgtaccacattaatattaggcagcagcagcacaaccaaggctggtgataacgacaatgaggaaaatatgatgaaggagtttatagccaagagcctggaggataaggagcagtcgatgagcatggttgagttggacccctcggaggtgccgtgtttctacgaatcaaatgatcatgagcaagaaaacaaagaagagcagaatgttaaggaagaggtgggtaaaatcggcatgtacgaggaagggtcatggcaagttttggtaccaaagcctccaatacccaaaaggaagaaagacaaacattcgttccatgaagttttgtcatattggaaaagcaaggagaaaggacaggcagcatcagctggcataaaagaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.06

Weight (kDa)

5.09

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29220
malus_domestica MD16G1055000.v1.1
prunus_persica Prupe.1G294400_v2.0.a1
rosa_laevigata RLG00000006451
rosa_multiflora Rmu_sc0004339.1_g000030
rosa_roxburghii Rroxscaffold_5G00378410
rosa_rugosa Rorug04G0299100
rosa_samantha Rh4AG353900 Rh4BG363800 Rh4CG378000 Rh4DG357800
rosa_wichuraiana Rw4G031040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 2 cut(s) 163, 277
AfaI GTAC 3 cut(s) 22, 251, 279
AfiI CCNNNNNNNGG 1 cut(s) 160
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
AlwNI CAGNNNCTG 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 39, 42, 45, 368
AseI ATTAAT 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 2 cut(s) 163, 277
BbvI GCAGC 4 cut(s) 51, 54, 57, 380
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 187
BisI GCNGC 4 cut(s) 40, 43, 46, 369
BlsI GCNGC 4 cut(s) 41, 44, 47, 370
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 3 cut(s) 153, 165, 279
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 54, 156
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 54, 156
BseLI CCNNNNNNNGG 1 cut(s) 160
BseXI GCAGC 4 cut(s) 51, 54, 57, 380
BshNI GGYRCC 2 cut(s) 163, 277
BslI CCNNNNNNNGG 1 cut(s) 160
Bsp143I GATC 1 cut(s) 187
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 153, 165, 279
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 2 cut(s) 163, 277
BssECI CCNNGG 2 cut(s) 54, 156
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 204, 222
BstC8I GCNNGC 1 cut(s) 379
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 45, 374
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 51, 54, 57, 380
BstXI CCANNNNNNTGG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 379
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 3 cut(s) 21, 250, 278
CviAII CATG 5 cut(s) 139, 191, 247, 264, 326
CviJI RGCY 5 cut(s) 59, 104, 111, 286, 377
CviKI_1 RGCY 5 cut(s) 59, 104, 111, 286, 377
CviQI GTAC 3 cut(s) 21, 250, 278
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 204, 222
EarI CTCTTC 2 cut(s) 204, 222
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 142, 194, 250, 267, 329
FaiI YATR 9 cut(s) 86, 101, 140, 192, 248, 265, 327, 340, 383
FatI CATG 5 cut(s) 138, 190, 246, 263, 325
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 40, 43, 46, 369
Fsp4HI GCNGC 4 cut(s) 40, 43, 46, 369
GluI GCNGC 4 cut(s) 40, 43, 46, 369
GsuI CTGGAG 1 cut(s) 134
Hin1II CATG 5 cut(s) 142, 194, 250, 267, 329
HinfI GANTC 2 cut(s) 15, 179
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 14, 160
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 85, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 374
Hsp92II CATG 5 cut(s) 142, 194, 250, 267, 329
KpnI GGTACC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 45, 98, 125, 350, 363
Lsp1109I GCAGC 4 cut(s) 51, 54, 57, 380
LweI GCATC 1 cut(s) 380
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 221, 239, 316
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 7 cut(s) 70, 109, 154, 166, 223, 247, 297
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 29, 222, 394
MspA1I CMGCKG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 45, 374
NdeII GATC 1 cut(s) 187
NlaIII CATG 5 cut(s) 142, 194, 250, 267, 329
NlaIV GGNNCC 3 cut(s) 153, 165, 279
NspI RCATGY 1 cut(s) 250
PagI TCATGA 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 164, 249
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 15, 179
PkrI GCNGC 4 cut(s) 41, 44, 47, 370
PshBI ATTAAT 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 153, 165, 279
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 3 cut(s) 22, 251, 279
RsaNI GTAC 3 cut(s) 21, 250, 278
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 29, 222, 394
SatI GCNGC 4 cut(s) 40, 43, 46, 369
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 113
SetI ASST 3 cut(s) 165, 234, 379
SfaNI GCATC 1 cut(s) 380
SinI GGWCC 1 cut(s) 151
SspI AATATT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 131
TfiI GAWTC 2 cut(s) 15, 179
Tru1I TTAA 3 cut(s) 29, 222, 394
Tru9I TTAA 3 cut(s) 29, 222, 394
TseI GCWGC 4 cut(s) 39, 42, 45, 368
TspDTI ATGAA 3 cut(s) 17, 104, 342
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 29
XceI RCATGY 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.