Prupe.1G294400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017657
Physical Location & Seq
Forward (+)
29171504 .. 29172725
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G294400.1

Sequence Viewer

Length: 639 bp
ATGCCTCGTGTGGTTTCACAGAATAAATATTTAATCTCCTCCATAATCTTCTTGTTTCAACAAGTGGTGAAGTTGTGGGCAAAGGCATGCGCCTGTGTAGCTCTCTCCATCTTCCTCATAGTTTGCATCCCCTTTTTGATCCTTGTGTTTCTACCCTTCTTCACTGCTTTTCTATGGGCACTTTTTCTTTGTAAGATCTTGTGTTTTTTCAGATTGTGCCCGCAATTTAGATTTCTAGAAACGAAAATATTCTTCAATTACTTGTCATGCACTGCAACAAAATTTATAGGCAGCAGAAGCAGCACATCCCATTTCGAGTGTGATTATAATCACAAGATTAATAATAATGATAATGAGTTAATAGCCAAGTCACTTGAGGATAAGCAGGAGAGCGTTGACTTGGATCCCTCTGAGCTTCCATGTCTGTATGAATCTGATTTTGATATTGAAGAAGAACATCAAGAGATCAACGGCGAAAGAAGGGTCAAGGAAGGGACCGGTCATATTCGCACTTACCAGGAGGAAGGCTCATGGCAAGTTGTGGTTTCAAAGCCTGCCCTGAGCAAGAAGAGAGAGCCTCAATCGTTCTATGATGTTTTGTCGTTTTGGAAATGCAAGGAGAAAGGGCAGGAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.75

Weight (kDa)

6.12

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29220
malus_domestica MD16G1055000.v1.1
prunus_persica Prupe.1G294400_v2.0.a1
rosa_laevigata RLG00000006451
rosa_multiflora Rmu_sc0004339.1_g000030
rosa_roxburghii Rroxscaffold_5G00378410
rosa_rugosa Rorug04G0299100
rosa_samantha Rh4AG353900 Rh4BG363800 Rh4CG378000 Rh4DG357800
rosa_wichuraiana Rw4G031040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AciI CCGC 1 cut(s) 221
AclWI GGATC 3 cut(s) 133, 398, 411
AcsI RAATTY 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 4 cut(s) 59, 256, 449, 549
AjnI CCWGG 1 cut(s) 516
AluBI AGCT 2 cut(s) 101, 415
AluI AGCT 2 cut(s) 101, 415
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 3 cut(s) 133, 398, 411
ApeKI GCWGC 2 cut(s) 291, 300
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
AseI ATTAAT 1 cut(s) 339
AsiGI ACCGGT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 495
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 495
BaeGI GKGCMC 2 cut(s) 181, 221
BamHI GGATCC 1 cut(s) 403
BauI CACGAG 1 cut(s) 6
BbvI GCAGC 2 cut(s) 303, 312
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 1 cut(s) 236
BglII AGATCT 1 cut(s) 195
BisI GCNGC 2 cut(s) 292, 301
BlsI GCNGC 2 cut(s) 293, 302
Bme1390I CCNGG 1 cut(s) 518
Bme18I GGWCC 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 495
BmiI GGNNCC 2 cut(s) 405, 496
BmrFI CCNGG 1 cut(s) 518
BmsI GCATC 1 cut(s) 135
BplI GAGNNNNNCTC 4 cut(s) 512, 544, 562, 594
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 497
Bse118I RCCGGY 1 cut(s) 497
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 518
BseGI GGATG 2 cut(s) 126, 305
BseJI GATNNNNATC 1 cut(s) 327
BseMII CTCAG 2 cut(s) 402, 551
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 2 cut(s) 181, 221
BseXI GCAGC 2 cut(s) 303, 312
BshTI ACCGGT 1 cut(s) 497
BsiSI CCGG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 626
BsmFI GGGAC 1 cut(s) 508
Bsp1286I GDGCHC 2 cut(s) 181, 221
Bsp143I GATC 4 cut(s) 138, 195, 403, 465
BspACI CCGC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 403, 552
BspLI GGNNCC 2 cut(s) 405, 496
BspPI GGATC 3 cut(s) 133, 398, 411
BsrFI RCCGGY 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 497
BssMI GATC 4 cut(s) 138, 195, 403, 465
BssSI CACGAG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 563
BstC8I GCNNGC 3 cut(s) 88, 221, 555
BstDEI CTNAG 2 cut(s) 411, 560
BstF5I GGATG 2 cut(s) 126, 305
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 4 cut(s) 141, 198, 406, 468
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 4 cut(s) 138, 195, 403, 465
BstMWI GCNNNNNNNGC 3 cut(s) 98, 297, 300
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 516
BstSLI GKGCMC 2 cut(s) 181, 221
BstV1I GCAGC 2 cut(s) 303, 312
BstX2I RGATCY 2 cut(s) 195, 403
BstYI RGATCY 2 cut(s) 195, 403
BtsCI GGATG 2 cut(s) 126, 305
BtsI GCAGTG 2 cut(s) 162, 270
BtsIMutI CAGTG 2 cut(s) 162, 270
Cac8I GCNNGC 3 cut(s) 88, 221, 555
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 495
CspAI ACCGGT 1 cut(s) 497
CviAII CATG 4 cut(s) 87, 267, 420, 531
CviJI RGCY 6 cut(s) 101, 365, 415, 528, 553, 577
CviKI_1 RGCY 6 cut(s) 101, 365, 415, 528, 553, 577
DdeI CTNAG 2 cut(s) 411, 560
DpnI GATC 4 cut(s) 140, 197, 405, 467
DpnII GATC 4 cut(s) 138, 195, 403, 465
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 516
FaeI CATG 4 cut(s) 90, 270, 423, 534
FaqI GGGAC 1 cut(s) 508
FatI CATG 4 cut(s) 86, 266, 419, 530
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 292, 301
FokI GGATG 2 cut(s) 113, 292
Fsp4HI GCNGC 2 cut(s) 292, 301
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 292, 301
HapII CCGG 1 cut(s) 498
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 90, 270, 423, 534
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 1 cut(s) 431
HpaII CCGG 1 cut(s) 498
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 3 cut(s) 212, 412, 436
Hpy188III TCNNGA 2 cut(s) 236, 461
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 4 cut(s) 166, 474, 485, 518
HpyCH4V TGCA 4 cut(s) 126, 270, 275, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 297, 300
HpyF3I CTNAG 2 cut(s) 411, 560
Hsp92II CATG 4 cut(s) 90, 270, 423, 534
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 138, 195, 403, 465
LpnPI CCDG 8 cut(s) 106, 371, 503, 511, 530, 567, 572, 614
Lsp1109I GCAGC 2 cut(s) 303, 312
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 369
MalI GATC 4 cut(s) 140, 197, 405, 467
MboI GATC 4 cut(s) 138, 195, 403, 465
MboII GAAGA 7 cut(s) 40, 103, 151, 244, 461, 464, 580
MflI RGATCY 2 cut(s) 195, 403
MhlI GDGCHC 2 cut(s) 181, 221
MluCI AATT 3 cut(s) 224, 256, 281
MnlI CCTC 7 cut(s) 15, 49, 125, 370, 418, 514, 588
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 3 cut(s) 32, 339, 359
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 518
MvaI CCWGG 1 cut(s) 518
MwoI GCNNNNNNNGC 3 cut(s) 98, 297, 300
NdeII GATC 4 cut(s) 138, 195, 403, 465
NlaIII CATG 4 cut(s) 90, 270, 423, 534
NlaIV GGNNCC 2 cut(s) 405, 496
NmuCI GTSAC 1 cut(s) 369
NspI RCATGY 1 cut(s) 90
PaeI GCATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 2 cut(s) 293, 302
PshBI ATTAAT 1 cut(s) 339
PsiI TTATAA 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 405, 496
PspPI GGNCC 1 cut(s) 495
PsuI RGATCY 2 cut(s) 195, 403
SaqAI TTAA 3 cut(s) 32, 339, 359
SatI GCNGC 2 cut(s) 292, 301
Sau3AI GATC 4 cut(s) 138, 195, 403, 465
Sau96I GGNCC 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 518
SduI GDGCHC 2 cut(s) 181, 221
SetI ASST 2 cut(s) 103, 417
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SphI GCATGC 1 cut(s) 90
Sse9I AATT 3 cut(s) 224, 256, 281
SsiI CCGC 1 cut(s) 221
SspI AATATT 2 cut(s) 29, 249
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 516
TaqI TCGA 1 cut(s) 315
TasI AATT 3 cut(s) 224, 256, 281
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 32, 339, 359
Tru9I TTAA 3 cut(s) 32, 339, 359
TscAI CASTG 2 cut(s) 169, 277
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 2 cut(s) 291, 300
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 444
TspRI CASTG 2 cut(s) 169, 277
VpaK11BI GGWCC 1 cut(s) 495
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 1 cut(s) 281
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.