Rroxscaffold_5G00378410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017657
Physical Location & Seq
Reverse (-)
58902666 .. 58904164
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378410.1

Sequence Viewer

Length: 672 bp
ATGCGAACTCAATTATCATGGAGGAAATACAAAAACTCAGTTTTGTTCAAACTGCTAAATTTGTGGGCAAAGGCAACCGTATGTGTAGTAGTGCTCCCCACAATCTTCTTCATTTGCGTCCCACTCTCTATCCTTCTCATCCCACCGTTATTTATTGCTTCTACATGGGCGTTTTGTATATGCAAGATACTATATTTCTTGTGCCCTCTTAGAGTTGTAGAGACCGTGAAGTTTTTCAGATTCTGTACCACATCAATATTAGGCAGCAGCAGCACAACCAAGGCTGGTGATAACGGCAATGAGGAAAATATGATGGAGTTTATAGCCAAGAGCCTGGAGGATAAGGAGCAGTTGATGAGCGTGGTTGAGTTGGACCCCTCGGAGGTACCGTGTTTCTACGAATCAGATGATCATGAGCAAGAAAACAAAGAAGAGCAGAATGTTAAGGAAGAAGTAGGTAAAATCGGTATGTACGAGGAAGGGTCATGGCAAGTTTTGGTACCAAAGCCTCCAATACCCAAAAGGAAGAAGGACAAACATTCGATAGGAAAGAGGAAAGGGAGGATTGATGGTAACATTTGGGTATCATGCATGGGTACCCGTTTGCCCTCTCTTATCATATGGATGTTACAGCTAACAGCCACATATATACAACTATTATTAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.59

Weight (kDa)

8.06

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29220
malus_domestica MD16G1055000.v1.1
prunus_persica Prupe.1G294400_v2.0.a1
rosa_laevigata RLG00000006451
rosa_multiflora Rmu_sc0004339.1_g000030
rosa_roxburghii Rroxscaffold_5G00378410
rosa_rugosa Rorug04G0299100
rosa_samantha Rh4AG353900 Rh4BG363800 Rh4CG378000 Rh4DG357800
rosa_wichuraiana Rw4G031040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 385, 499, 596
AccB1I GGYRCC 3 cut(s) 385, 499, 596
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 5 cut(s) 247, 387, 473, 501, 598
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 1 cut(s) 634
AluI AGCT 1 cut(s) 634
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 264, 267, 270
ApoI RAATTY 1 cut(s) 58
AseI ATTAAT 1 cut(s) 662
Asp700I GAANNNNTTC 1 cut(s) 233
Asp718I GGTACC 3 cut(s) 385, 499, 596
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 3 cut(s) 385, 499, 596
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 276, 279, 282
BccI CCATC 2 cut(s) 307, 563
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 335
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 3 cut(s) 265, 268, 271
BlsI GCNGC 3 cut(s) 266, 269, 272
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 4 cut(s) 375, 387, 501, 598
BmrFI CCNGG 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 279, 378
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 279, 378
BseGI GGATG 2 cut(s) 138, 630
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 3 cut(s) 276, 279, 282
BshNI GGYRCC 3 cut(s) 385, 499, 596
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 96, 206
Bsp143I GATC 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 4 cut(s) 375, 387, 501, 598
BspQI GCTCTTC 1 cut(s) 426
BspT107I GGYRCC 3 cut(s) 385, 499, 596
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 279, 378
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 4 cut(s) 79, 147, 226, 390
Bst6I CTCTTC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 37, 209
BstF5I GGATG 2 cut(s) 138, 630
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 276, 279, 282
BstXI CCANNNNNNTGG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 138, 630
CaiI CAGNNNCTG 1 cut(s) 243
CciI TCATGA 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 373
CseI GACGC 1 cut(s) 106
Csp6I GTAC 5 cut(s) 246, 386, 472, 500, 597
CviAII CATG 6 cut(s) 18, 165, 413, 486, 588, 592
CviJI RGCY 6 cut(s) 284, 326, 333, 508, 634, 641
CviKI_1 RGCY 6 cut(s) 284, 326, 333, 508, 634, 641
CviQI GTAC 5 cut(s) 246, 386, 472, 500, 597
DdeI CTNAG 2 cut(s) 37, 209
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 6 cut(s) 21, 168, 416, 489, 591, 595
FaqI GGGAC 1 cut(s) 104
FatI CATG 6 cut(s) 17, 164, 412, 485, 587, 591
FauNDI CATATG 1 cut(s) 620
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 265, 268, 271
FokI GGATG 2 cut(s) 125, 637
Fsp4HI GCNGC 3 cut(s) 265, 268, 271
GluI GCNGC 3 cut(s) 265, 268, 271
GsuI CTGGAG 1 cut(s) 356
HgaI GACGC 1 cut(s) 106
Hin1II CATG 6 cut(s) 21, 168, 416, 489, 591, 595
HinfI GANTC 2 cut(s) 240, 401
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 3 cut(s) 239, 382, 406
Hpy188III TCNNGA 1 cut(s) 413
HpyAV CCTTC 3 cut(s) 143, 473, 523
HpyCH4III ACNGT 4 cut(s) 79, 147, 226, 390
HpyCH4V TGCA 2 cut(s) 183, 591
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 2 cut(s) 37, 209
Hsp92II CATG 6 cut(s) 21, 168, 416, 489, 591, 595
KpnI GGTACC 3 cut(s) 389, 503, 600
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 1 cut(s) 409
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 2 cut(s) 99, 346
LpnPI CCDG 3 cut(s) 270, 320, 347
Lsp1109I GCAGC 3 cut(s) 276, 279, 282
MaeIII GTNAC 2 cut(s) 572, 627
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 5 cut(s) 97, 100, 443, 461, 538
MhlI GDGCHC 2 cut(s) 96, 206
MluCI AATT 3 cut(s) 11, 58, 663
MmeI TCCRAC 1 cut(s) 351
Mph1103I ATGCAT 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 2 cut(s) 444, 662
MslI CAYNNNNRTG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeI CATATG 1 cut(s) 620
NdeII GATC 1 cut(s) 409
NlaIII CATG 6 cut(s) 21, 168, 416, 489, 591, 595
NlaIV GGNNCC 4 cut(s) 375, 387, 501, 598
NsiI ATGCAT 1 cut(s) 593
PagI TCATGA 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 2 cut(s) 386, 471
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 240, 401
PkrI GCNGC 3 cut(s) 266, 269, 272
PshBI ATTAAT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 4 cut(s) 375, 387, 501, 598
PspPI GGNCC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 243
RsaI GTAC 5 cut(s) 247, 387, 473, 501, 598
RsaNI GTAC 5 cut(s) 246, 386, 472, 500, 597
RseI CAYNNNNRTG 1 cut(s) 623
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 444, 662
SatI GCNGC 3 cut(s) 265, 268, 271
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 2 cut(s) 96, 206
SetI ASST 3 cut(s) 387, 460, 636
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 3 cut(s) 11, 58, 663
SspI AATATT 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 4 cut(s) 79, 147, 226, 390
TaqI TCGA 1 cut(s) 542
TasI AATT 3 cut(s) 11, 58, 663
TfiI GAWTC 2 cut(s) 240, 401
Tru1I TTAA 2 cut(s) 444, 662
Tru9I TTAA 2 cut(s) 444, 662
TseI GCWGC 3 cut(s) 264, 267, 270
TspDTI ATGAA 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 373
VspI ATTAAT 1 cut(s) 662
XapI RAATTY 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.