Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013363

Physical Location & Seq

Genomic Coordinates Reverse (-)

4570105 .. 4572252

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1065100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGCGGACGGCGGTGAAGAAATTCGTCTCCCCCTTACATCTGCAAATACCCAAAACGCCCTTACGTCAGGGTCGGACTCTGACGCATGCCATCTACCAATCACCACCGTCGGAGCCACCCGACCTTTCTCAAACCATAGCGTCGACGCACGCGGTGTTTTCGAACCCGTGTTTTAATCTTCTCGTTTTGTGCAGGAACATCGATTCCCTGAAGAAAGTCCACAGCTTGCTCGTCCTCCACGGCCTCGCCGACGGTCTCCTTTGCCGAACAAAATTGATCAGTTTATATGGGTCATTTGGGTACGTCAAGTGTGCCCGGTATCTGTTCGATAAAATGCCAAGCCCAGATTTTTATTCGTGGAAAGTGATGCTGAGGTGGTACTTTATGCACAATTTGTATGAAGAGGTTATAGGGTTTTATAATCGTATGAGAGTGTGCGTAAGAGAGCATGACAACGTTGTTTTCTCGATTGTGTTGAAGGCGTGTAGTGAGTTGCGAGATTTTGATGAAGGGAGGAAGGTGCACTGCCGGATTGTTAAGGTGGCGAGTCCTGATAGTTTCGTATTGACGGGTTTGGTGGATTTGTATGCGAAGTGTGGATGGATTGAGTGTTCTCGGGCGGTTTTTGAAGGGATTGTTGATAGAAATGTGGTTTGTTGGACTTCAATGATAGTTGGGTATGTGCAAAATGATTGTCCGGAAGATGGGCTGGTCTTGTTTAATAGGATGAGAGAGGGGTTGGTTGAAGGGAATCAGTTCACGTTAGGAAGCGTACTTACGGCGTGTACAAAGTTAAGATCTTTGCATCAAGGAAAGTGGATTCATGGACATTTGATTAAGAATGGTATTGAACTTAACTCTTTTCTGGTGACATCCCTTCTGGACTTGTATGTCAAGTGGGGGGACATTGGAGATGCTCGTTCCATATTTGATGAGTTTTGTGGGAGGACCGATCTTGTTTCATGGACAGCAATGATTGTAGGGTACACTCAATGTGGGTATCCCGACGAGGCTTTGGAGTTGTTTACGGATAGGAAATGGGTTGGTCTCTTGCCCAATTCTATAACTACTGCAAGTGTGCTTTCGTCTTGTGCACAGTCAGATAATTTGAATTTGGGAAGGTCAATCCATGGTCTTGGGATAAAACTTGGGTTGGAGGAGCCTACTGTGAGAAATGCTCTGGTGGACATGTATGCAAAATGCCATATGATTGGTGATGCTCGTTATATCTTTGAAACAATCTCCGACAAGAATGTGATTGCTTGGAATTCAATTATTTCCGGGTATTCCCAAAACGGGTCTGCACATGAAGCCCTCCAACTGTTTCATCAAATGAGATCAGAATCATTCTCACATGATGCGTTCGCATTGGCAAGTGTCCTCTCAGCTTGCGCTTCCCTTGGTTTTCTTCCAGTTGGTTCATCGCTTCATGCTCACTCCATAAAGGATGGCCTATTAACTGCAAATATCTATGTTGGCACTGCACTTTTAAACTTCTACGCCAAGTGCGGGGATGCTGAATCTGCTCGTCTAGTTTTTGATGCAATGGGAGAGAAGAACACTATAACATGGAGTGCAATGATTGGCGGTTATGGAATTCAGGGTGACAGTACAGGTTCCGTTGCACTTTTCAGTGATATGTTGAAGAATCATCTGGAGCCCAACGAAGTAATCTTCACGACCTTATTGTCAGCTTGTAGCCATACGGGAATGATTGCAGAAGGGTGGAGGTATTTCAATTCACTCTGCAAGGACTATAACTTCAAGCCCTCAATGAAGCATTACGCGTGTATGGTCGATCTATTGGCTCGTGCTGGTAAACTTGAAGAGGCCCTGGAATTCATTGAGAGAATGCCGATTCAGCCAGATGTTAGTTTGTTTGGGGCTTTTCTCCACGGATGCGGACTCTATTCGAGGTTTGATCTTGGCGGAGTGGCGATAAGAAGAATGCTAGAGCTGCATCCTGGTGAAGCTTGCTATTATGTGCTAATGTGTAACCTTTATGCTTCAGATGGTCGATGGAGCCAGGTTAATCAGGTTAGAGAGCTAATGAAGCAGAGAGGATTGAGCAAGTCCCTTGCATATAGCCAAGTAGAGATGGATATCAGAAATCACATTGCACCTGTTAGGTTGGCATGTGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

716

Amino Acids

79.87

Weight (kDa)

7.07

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	215 - 264	1.5e-06	PPR repeat family
PPR_2	PF13041	318 - 365	1.7e-07	PPR repeat family
PPR_2	PF13041	417 - 465	7.7e-09	PPR repeat family
PPR	PF01535	421 - 449	1.5e-07	PPR repeat
PPR_2	PF13041	519 - 567	5.4e-08	PPR repeat family
E_motif	PF20431	637 - 692	1.5e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03380
fragaria_vesca	FvH4_4g30510
malus_domestica	MD16G1065100.v1.1
prunus_persica	Prupe.1G281800_v2.0.a1
pyrus_communis	pycom13g05850 pycom16g05690
rosa_chinensis	RchiOBHm_Chr4g0438881
rosa_laevigata	RLG00000006322
rosa_multiflora	Rmu_co8498131.1_g000001 Rmu_sc0002505.1_g000022
rosa_roxburghii	Rroxscaffold_5G00379900
rosa_rugosa	Rorug04G0314000
rosa_samantha	Rh4AG364800 Rh4BG375900 Rh4CG390000 Rh4DG370600
rosa_wichuraiana	Rw0G007290 Rw0G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AasI	GACNNNNNNGTC	2 cut(s)	890, 1687
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	2 cut(s)	152, 1787
AccIII	TCCGGA	1 cut(s)	697
AciI	CCGC	8 cut(s)	4, 11, 152, 620, 1509, 1587, 1902, 1929
AclI	AACGTT	1 cut(s)	456
AcsI	RAATTY	5 cut(s)	20, 1111, 1267, 1596, 1838
AcuI	CTGAAG	2 cut(s)	230, 1992
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	6 cut(s)	302, 380, 774, 787, 986, 1612
AfiI	CCNNNNNNNGG	3 cut(s)	704, 1296, 1509
AflIII	ACRYGT	2 cut(s)	1188, 1785
AjnI	CCWGG	3 cut(s)	1833, 1963, 2025
AloI	GAACNNNNNNTCC	4 cut(s)	188, 220, 595, 627
AluBI	AGCT	6 cut(s)	225, 1388, 1694, 1957, 1973, 2047
AluI	AGCT	6 cut(s)	225, 1388, 1694, 1957, 1973, 2047
Alw21I	GWGCWC	2 cut(s)	525, 1096
Alw26I	GTCTC	3 cut(s)	31, 260, 1052
Alw44I	GTGCAC	2 cut(s)	521, 1092
Ama87I	CYCGRG	1 cut(s)	615
Aor13HI	TCCGGA	1 cut(s)	697
AoxI	GGCC	3 cut(s)	241, 1450, 1830
ApaLI	GTGCAC	2 cut(s)	521, 1092
ApeKI	GCWGC	1 cut(s)	1957
ApoI	RAATTY	5 cut(s)	20, 1111, 1267, 1596, 1838
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
Asp700I	GAANNNNTTC	2 cut(s)	20, 755
AspLEI	GCGC	1 cut(s)	1394
AspS9I	GGNCC	2 cut(s)	948, 1831
AsuC2I	CCSGG	2 cut(s)	316, 1282
AsuHPI	GGTGA	6 cut(s)	25, 93, 880, 1226, 1616, 1979
AsuII	TTCGAA	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	1 cut(s)	948
BaeGI	GKGCMC	3 cut(s)	316, 525, 1096
BanII	GRGCYC	1 cut(s)	1662
BarI	GAAGNNNNNNTAC	2 cut(s)	760, 792
BauI	CACGAG	1 cut(s)	1809
Bbv12I	GWGCWC	2 cut(s)	525, 1096
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	1944
BccI	CCATC	7 cut(s)	98, 594, 698, 1442, 2006, 2013, 2092
BceAI	ACGGC	3 cut(s)	24, 256, 795
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	3 cut(s)	1835, 1965, 2027
BciVI	GTATCC	1 cut(s)	1011
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	316, 1282
BcoDI	GTCTC	3 cut(s)	31, 260, 1052
BfaI	CTAG	2 cut(s)	1532, 1952
BfuI	GTATCC	1 cut(s)	1011
BglII	AGATCT	1 cut(s)	797
BisI	GCNGC	1 cut(s)	1958
BlsI	GCNGC	1 cut(s)	1959
Bme1390I	CCNGG	5 cut(s)	316, 1282, 1835, 1965, 2027
Bme18I	GGWCC	1 cut(s)	948
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	948, 1831
BmiI	GGNNCC	5 cut(s)	114, 1161, 1618, 1659, 2024
BmrFI	CCNGG	5 cut(s)	316, 1282, 1835, 1965, 2027
BmsI	GCATC	9 cut(s)	357, 814, 904, 1207, 1348, 1504, 1531, 1889, 1969
BplI	GAGNNNNNCTC	2 cut(s)	1162, 1194
BpmI	CTGGAG	1 cut(s)	1676
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	161
BpuMI	CCSGG	2 cut(s)	316, 1282
Bsa29I	ATCGAT	1 cut(s)	201
BsaBI	GATNNNNATC	2 cut(s)	1342, 2102
BsaI	GGTCTC	2 cut(s)	260, 1052
BsaJI	CCNNGG	5 cut(s)	238, 1129, 1399, 1833, 1894
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	3 cut(s)	704, 1296, 1509
Bse1I	ACTGG	1 cut(s)	1412
Bse3DI	GCAATG	4 cut(s)	978, 1551, 1584, 2115
Bse8I	GATNNNNATC	2 cut(s)	1342, 2102
BseAI	TCCGGA	1 cut(s)	697
BseBI	CCWGG	3 cut(s)	1835, 1965, 2027
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	5 cut(s)	238, 1129, 1399, 1833, 1894
BseGI	GGATG	7 cut(s)	605, 732, 872, 1453, 1519, 1904, 1960
BseJI	GATNNNNATC	2 cut(s)	1342, 2102
BseLI	CCNNNNNNNGG	3 cut(s)	704, 1296, 1509
BseMI	GCAATG	4 cut(s)	978, 1551, 1584, 2115
BseMII	CTCAG	2 cut(s)	362, 1398
BseNI	ACTGG	1 cut(s)	1412
BseRI	GAGGAG	1 cut(s)	1172
BseSI	GKGCMC	3 cut(s)	316, 525, 1096
BseXI	GCAGC	1 cut(s)	1944
BsgI	GTGCAG	3 cut(s)	211, 1287, 1467
Bsh1236I	CGCG	2 cut(s)	152, 1787
BshFI	GGCC	3 cut(s)	243, 1452, 1832
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	2 cut(s)	525, 1096
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	4 cut(s)	316, 529, 698, 1281
BslFI	GGGAC	2 cut(s)	917, 2059
BslI	CCNNNNNNNGG	3 cut(s)	704, 1296, 1509
BsmAI	GTCTC	3 cut(s)	31, 260, 1052
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	2 cut(s)	917, 2059
BsmI	GAATGC	2 cut(s)	1857, 1953
BsnI	GGCC	3 cut(s)	243, 1452, 1832
Bso31I	GGTCTC	2 cut(s)	260, 1052
BsoBI	CYCGRG	1 cut(s)	615
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	4 cut(s)	316, 525, 1096, 1662
Bsp13I	TCCGGA	1 cut(s)	697
Bsp1407I	TGTACA	1 cut(s)	785
Bsp143I	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
Bsp19I	CCATGG	1 cut(s)	1129
BspACI	CCGC	8 cut(s)	4, 11, 152, 620, 1509, 1587, 1902, 1929
BspANI	GGCC	3 cut(s)	243, 1452, 1832
BspCNI	CTCAG	2 cut(s)	363, 1397
BspDI	ATCGAT	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	697
BspFNI	CGCG	2 cut(s)	152, 1787
BspLI	GGNNCC	5 cut(s)	114, 1161, 1618, 1659, 2024
BspT104I	TTCGAA	1 cut(s)	161
BspTNI	GGTCTC	2 cut(s)	260, 1052
BsrDI	GCAATG	4 cut(s)	978, 1551, 1584, 2115
BsrGI	TGTACA	1 cut(s)	785
BsrI	ACTGG	1 cut(s)	1412
BssECI	CCNNGG	5 cut(s)	238, 1129, 1399, 1833, 1894
BssMI	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
BssSI	CACGAG	1 cut(s)	1809
BssT1I	CCWWGG	2 cut(s)	1129, 1399
Bst2BI	CACGAG	1 cut(s)	1809
Bst2UI	CCWGG	3 cut(s)	1835, 1965, 2027
Bst4CI	ACNGT	6 cut(s)	108, 254, 1098, 1168, 1323, 1610
Bst6I	CTCTTC	2 cut(s)	396, 1821
BstAPI	GCANNNNNTGC	1 cut(s)	2141
BstAUI	TGTACA	1 cut(s)	785
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	5 cut(s)	87, 150, 227, 1390, 1975
BstDEI	CTNAG	3 cut(s)	371, 1384, 2145
BstDSI	CCRYGG	3 cut(s)	238, 1129, 1894
BstF5I	GGATG	7 cut(s)	605, 732, 872, 1453, 1519, 1904, 1960
BstFNI	CGCG	2 cut(s)	152, 1787
BstHHI	GCGC	1 cut(s)	1394
BstKTI	GATC	6 cut(s)	279, 800, 955, 1340, 1801, 1924
BstMAI	GTCTC	3 cut(s)	31, 260, 1052
BstMBI	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
BstMWI	GCNNNNNNNGC	6 cut(s)	1310, 1523, 1861, 1957, 2053, 2141
BstNI	CCWGG	3 cut(s)	1835, 1965, 2027
BstNSI	RCATGY	3 cut(s)	89, 1192, 2139
BstSCI	CCNGG	5 cut(s)	314, 1280, 1833, 1963, 2025
BstSLI	GKGCMC	3 cut(s)	316, 525, 1096
BstUI	CGCG	2 cut(s)	152, 1787
BstV1I	GCAGC	1 cut(s)	1944
BstX2I	RGATCY	1 cut(s)	797
BstXI	CCANNNNNNTGG	2 cut(s)	1136, 1211
BstYI	RGATCY	1 cut(s)	797
Bsu15I	ATCGAT	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	1011
BsuRI	GGCC	3 cut(s)	243, 1452, 1832
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	3 cut(s)	238, 1129, 1894
BtgZI	GCGATG	1 cut(s)	1407
BtsCI	GGATG	7 cut(s)	605, 732, 872, 1453, 1519, 1904, 1960
BtsI	GCAGTG	2 cut(s)	523, 1479
BtsIMutI	CAGTG	3 cut(s)	523, 1479, 1639
Cac8I	GCNNGC	5 cut(s)	87, 150, 227, 1390, 1975
CfoI	GCGC	1 cut(s)	1394
Cfr13I	GGNCC	2 cut(s)	948, 1831
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	3 cut(s)	91, 129, 154
Csp6I	GTAC	6 cut(s)	301, 379, 773, 786, 985, 1611
CspCI	CAANNNNNGTGG	2 cut(s)	797, 832
CviQI	GTAC	6 cut(s)	301, 379, 773, 786, 985, 1611
DdeI	CTNAG	3 cut(s)	371, 1384, 2145
DpnI	GATC	6 cut(s)	278, 799, 954, 1339, 1800, 1923
DpnII	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
DraI	TTTAAA	1 cut(s)	1491
DraIII	CACNNNGTG	1 cut(s)	154
DrdI	GACNNNNNNGTC	2 cut(s)	890, 1687
DseDI	GACNNNNNNGTC	2 cut(s)	890, 1687
Eam1104I	CTCTTC	2 cut(s)	396, 1821
EarI	CTCTTC	2 cut(s)	396, 1821
EciI	GGCGGA	1 cut(s)	1944
Eco130I	CCWWGG	2 cut(s)	1129, 1399
Eco24I	GRGCYC	1 cut(s)	1662
Eco31I	GGTCTC	2 cut(s)	260, 1052
Eco32I	GATATC	1 cut(s)	2104
Eco47I	GGWCC	1 cut(s)	948
Eco57I	CTGAAG	2 cut(s)	230, 1992
Eco88I	CYCGRG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	1831
EcoRI	GAATTC	3 cut(s)	1267, 1596, 1838
EcoRII	CCWGG	3 cut(s)	1833, 1963, 2025
EcoRV	GATATC	1 cut(s)	2104
EcoT14I	CCWWGG	2 cut(s)	1129, 1399
EcoT38I	GRGCYC	1 cut(s)	1662
ErhI	CCWWGG	2 cut(s)	1129, 1399
Esp3I	CGTCTC	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	917, 2059
FauI	CCCGC	1 cut(s)	1502
FauNDI	CATATG	1 cut(s)	1206
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	1958
FokI	GGATG	7 cut(s)	612, 739, 859, 1460, 1526, 1911, 1947
FriOI	GRGCYC	1 cut(s)	1662
Fsp4HI	GCNGC	1 cut(s)	1958
FspBI	CTAG	2 cut(s)	1532, 1952
GlaI	GCGC	1 cut(s)	1393
GluI	GCNGC	1 cut(s)	1958
GsuI	CTGGAG	1 cut(s)	1676
HaeIII	GGCC	3 cut(s)	243, 1452, 1832
HapII	CCGG	4 cut(s)	316, 529, 698, 1281
HgaI	GACGC	3 cut(s)	91, 129, 154
HhaI	GCGC	1 cut(s)	1394
Hin6I	GCGC	1 cut(s)	1392
HinP1I	GCGC	1 cut(s)	1392
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	1971
HpaII	CCGG	4 cut(s)	316, 529, 698, 1281
HphI	GGTGA	6 cut(s)	25, 93, 880, 1226, 1616, 1979
Hpy188I	TCNGA	8 cut(s)	75, 81, 112, 1102, 1246, 1342, 2011, 2108
Hpy188III	TCNNGA	7 cut(s)	466, 551, 698, 881, 1004, 1655, 1678
Hpy99I	CGWCG	5 cut(s)	112, 145, 148, 254, 1010
HpyAV	CCTTC	8 cut(s)	472, 503, 511, 623, 740, 887, 1113, 1715
HpyCH4III	ACNGT	6 cut(s)	108, 254, 1098, 1168, 1323, 1610
HpyCH4IV	ACGT	4 cut(s)	64, 303, 456, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1310, 1523, 1861, 1957, 2053, 2141
HpyF3I	CTNAG	3 cut(s)	371, 1384, 2145
HpySE526I	ACGT	4 cut(s)	64, 303, 456, 761
HspAI	GCGC	1 cut(s)	1392
Kpn2I	TCCGGA	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
LmnI	GCTCC	4 cut(s)	112, 1159, 1657, 2022
Lsp1109I	GCAGC	1 cut(s)	1944
LweI	GCATC	9 cut(s)	357, 814, 904, 1207, 1348, 1504, 1531, 1889, 1969
MaeI	CTAG	2 cut(s)	1532, 1952
MaeII	ACGT	4 cut(s)	64, 303, 456, 761
MaeIII	GTNAC	3 cut(s)	868, 1604, 1994
MalI	GATC	6 cut(s)	278, 799, 954, 1339, 1800, 1923
MboI	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
MflI	RGATCY	1 cut(s)	797
MhlI	GDGCHC	4 cut(s)	316, 525, 1096, 1662
MluI	ACGCGT	1 cut(s)	1785
MlyI	GAGTC	3 cut(s)	70, 556, 1899
MmeI	TCCRAC	6 cut(s)	53, 90, 638, 1134, 1269, 1342
MroI	TCCGGA	1 cut(s)	697
MroXI	GAANNNNTTC	2 cut(s)	20, 755
MseI	TTAA	9 cut(s)	174, 537, 720, 794, 837, 855, 1457, 1490, 2031
MslI	CAYNNNNRTG	1 cut(s)	1965
MspI	CCGG	4 cut(s)	316, 529, 698, 1281
MspR9I	CCNGG	5 cut(s)	316, 1282, 1835, 1965, 2027
Mva1269I	GAATGC	2 cut(s)	1857, 1953
MvaI	CCWGG	3 cut(s)	1835, 1965, 2027
MvnI	CGCG	2 cut(s)	152, 1787
MwoI	GCNNNNNNNGC	6 cut(s)	1310, 1523, 1861, 1957, 2053, 2141
NciI	CCSGG	2 cut(s)	316, 1282
NcoI	CCATGG	1 cut(s)	1129
NdeI	CATATG	1 cut(s)	1206
NdeII	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
NlaIV	GGNNCC	5 cut(s)	114, 1161, 1618, 1659, 2024
NmuCI	GTSAC	2 cut(s)	868, 1604
NspI	RCATGY	3 cut(s)	89, 1192, 2139
NspV	TTCGAA	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	89
PciI	ACATGT	1 cut(s)	1188
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	2 cut(s)	1857, 1953
PdmI	GAANNNNTTC	2 cut(s)	20, 755
PfeI	GAWTC	7 cut(s)	203, 751, 820, 1343, 1520, 1648, 1858
PkrI	GCNGC	1 cut(s)	1959
PleI	GAGTC	3 cut(s)	70, 555, 1899
PpsI	GAGTC	3 cut(s)	70, 555, 1899
PscI	ACATGT	1 cut(s)	1188
PsiI	TTATAA	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	1833, 1963, 2025
PspGI	CCWGG	3 cut(s)	1833, 1963, 2025
PspN4I	GGNNCC	5 cut(s)	114, 1161, 1618, 1659, 2024
PspPI	GGNCC	2 cut(s)	948, 1831
PsuI	RGATCY	1 cut(s)	797
RsaI	GTAC	6 cut(s)	302, 380, 774, 787, 986, 1612
RsaNI	GTAC	6 cut(s)	301, 379, 773, 786, 985, 1611
RseI	CAYNNNNRTG	1 cut(s)	1965
SalI	GTCGAC	1 cut(s)	142
SaqAI	TTAA	9 cut(s)	174, 537, 720, 794, 837, 855, 1457, 1490, 2031
SatI	GCNGC	1 cut(s)	1958
Sau3AI	GATC	6 cut(s)	276, 797, 952, 1337, 1798, 1921
Sau96I	GGNCC	2 cut(s)	948, 1831
SchI	GAGTC	3 cut(s)	70, 556, 1899
ScrFI	CCNGG	5 cut(s)	316, 1282, 1835, 1965, 2027
SduI	GDGCHC	4 cut(s)	316, 525, 1096, 1662
SfaNI	GCATC	9 cut(s)	357, 814, 904, 1207, 1348, 1504, 1531, 1889, 1969
SfuI	TTCGAA	1 cut(s)	161
SgrDI	CGTCGACG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	1965
SphI	GCATGC	1 cut(s)	89
SsiI	CCGC	8 cut(s)	4, 11, 152, 620, 1509, 1587, 1902, 1929
SspMI	CTAG	2 cut(s)	1532, 1952
StyD4I	CCNGG	5 cut(s)	314, 1280, 1833, 1963, 2025
StyI	CCWWGG	2 cut(s)	1129, 1399
TaaI	ACNGT	6 cut(s)	108, 254, 1098, 1168, 1323, 1610
TaiI	ACGT	4 cut(s)	67, 306, 459, 764
TaqI	TCGA	8 cut(s)	143, 161, 201, 327, 467, 1797, 1913, 2017
TaqII	GACCGA	1 cut(s)	965
TatI	WGTACW	2 cut(s)	785, 1610
TfiI	GAWTC	7 cut(s)	203, 751, 820, 1343, 1520, 1648, 1858
Tru1I	TTAA	9 cut(s)	174, 537, 720, 794, 837, 855, 1457, 1490, 2031
Tru9I	TTAA	9 cut(s)	174, 537, 720, 794, 837, 855, 1457, 1490, 2031
TscAI	CASTG	3 cut(s)	530, 1486, 1639
TseFI	GTSAC	2 cut(s)	868, 1604
TseI	GCWGC	1 cut(s)	1957
Tsp45I	GTSAC	2 cut(s)	868, 1604
TspGWI	ACGGA	3 cut(s)	1043, 1609, 1911
TspRI	CASTG	3 cut(s)	530, 1486, 1639
VneI	GTGCAC	2 cut(s)	521, 1092
VpaK11BI	GGWCC	1 cut(s)	948
XapI	RAATTY	5 cut(s)	20, 1111, 1267, 1596, 1838
XceI	RCATGY	3 cut(s)	89, 1192, 2139
XmiI	GTMKAC	1 cut(s)	143
XmnI	GAANNNNTTC	2 cut(s)	20, 755
XspI	CTAG	2 cut(s)	1532, 1952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.