Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013363

Physical Location & Seq

Genomic Coordinates Reverse (-)

3828704 .. 3829084

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGGACGACGATGAAGAAATTCATCTCCACCTTACATCTGCAAATACAGAAAACGCCCTTACTTCAATGGCGGACTCAGATGCATGCCATCTACCAATCACCACCGTCGGAGCCTCCCGACTTTTCGCAAACCATTGCGTCGACGCACGCGGTGTTTTCGAACCCATGTTTTAAGCTTCTCGTTTTGTGCAGGAACATCGATTCCCTGAAGAAAGTCCACAGCTTGCTCGTCCTCCACGGCCTCGCCGACAATCTCCTGTGTCGGACAAAATTGATCAAGTGTATATGGGTCATTTGGGTACATCAAGTATGCCAAGCCCAGATATTTTTATTCGTGGAAAGTGATGCTGAGGTGGTACTTTATGCACAATTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

127

Amino Acids

14.55

Weight (kDa)

9.12

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03380
fragaria_vesca	FvH4_4g30510
malus_domestica	MD16G1065100.v1.1
prunus_persica	Prupe.1G281800_v2.0.a1
pyrus_communis	pycom13g05850 pycom16g05690
rosa_chinensis	RchiOBHm_Chr4g0438881
rosa_laevigata	RLG00000006322
rosa_multiflora	Rmu_co8498131.1_g000001 Rmu_sc0002505.1_g000022
rosa_roxburghii	Rroxscaffold_5G00379900
rosa_rugosa	Rorug04G0314000
rosa_samantha	Rh4AG364800 Rh4BG375900 Rh4CG390000 Rh4DG370600
rosa_wichuraiana	Rw0G007290 Rw0G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	73, 152
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	303, 360
AgsI	TTSAA	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	178, 225
AluI	AGCT	2 cut(s)	178, 225
AoxI	GGCC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	93
AsuII	TTCGAA	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BclI	TGATCA	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	2 cut(s)	72, 337
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	135
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	92, 342
BsgI	GTGCAG	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	201
BsnI	GGCC	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	73, 152
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	91, 343
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	3 cut(s)	87, 150, 227
BstDEI	CTNAG	2 cut(s)	78, 351
BstDSI	CCRYGG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	89
BstUI	CGCG	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	87, 150, 227
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	2 cut(s)	129, 154
Csp6I	GTAC	2 cut(s)	302, 359
CviAII	CATG	2 cut(s)	86, 168
CviJI	RGCY	5 cut(s)	115, 178, 225, 243, 320
CviKI_1	RGCY	5 cut(s)	115, 178, 225, 243, 320
CviQI	GTAC	2 cut(s)	302, 359
DdeI	CTNAG	2 cut(s)	78, 351
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DraIII	CACNNNGTG	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	87
FaeI	CATG	2 cut(s)	89, 171
FaiI	YATR	7 cut(s)	87, 169, 287, 289, 313, 366, 379
FatI	CATG	2 cut(s)	85, 167
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	243
HgaI	GACGC	2 cut(s)	129, 154
Hin1II	CATG	2 cut(s)	89, 171
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	76, 203
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	2 cut(s)	144, 220
Hpy188I	TCNGA	3 cut(s)	81, 112, 267
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	144, 220
Hpy99I	CGWCG	4 cut(s)	13, 112, 145, 148
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	43, 85, 192, 368
HpyF3I	CTNAG	2 cut(s)	78, 351
Hsp92II	CATG	2 cut(s)	89, 171
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	4 cut(s)	178, 221, 272, 335
LweI	GCATC	2 cut(s)	72, 337
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	2 cut(s)	28, 223
MluCI	AATT	3 cut(s)	20, 272, 371
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	90, 245
MnlI	CCTC	4 cut(s)	126, 245, 254, 346
Mph1103I	ATGCAT	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	174
MvnI	CGCG	1 cut(s)	152
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	2 cut(s)	89, 171
NlaIV	GGNNCC	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	87
NspI	RCATGY	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	114
RsaI	GTAC	2 cut(s)	303, 360
RsaNI	GTAC	2 cut(s)	302, 359
SalI	GTCGAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	70
SetI	ASST	4 cut(s)	35, 180, 227, 357
SfaNI	GCATC	2 cut(s)	72, 337
SfuI	TTCGAA	1 cut(s)	161
SgrDI	CGTCGACG	1 cut(s)	142
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	3 cut(s)	20, 272, 371
SsiI	CCGC	2 cut(s)	73, 152
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	143, 161, 201
TasI	AATT	3 cut(s)	20, 272, 371
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	13, 29
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.