Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013363

Physical Location & Seq

Genomic Coordinates Reverse (-)

60111632 .. 60114493

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGAAGCTCATCTCTAACCTACACAAACAAATACCCAGAAACCCTTTACTTCAATTACGAACTCTAACCCATTTCATCTATAACCCTCCACCTCCAGACCCACCTGAGTTTTCTCAAGCCAAAGCCTCAACCCAGTCAGTCTTTTCAAACCCAGCCTTCAATCTTCTCGTCATGTGTAGAAACATCGATTCCCTTAGGAAAGTTCATAGCTTGCTTGTAGTACACGGCTTATCAAACGATCTTGTTTGTCACGCCAAATTGATTAGCCTGTACGCGTCATTTGGGCACGTCAATTGTGCCCGGTCGGTGTTCGACGAAATGCCAAGCCCGGATTTTTATTCGTCGAAAGTGATGCTGAGGTGGTACTTCATGCACAATGTGTATGAGGAGGTTGTGGGGTTGTTTAGGAGGATGAGAATGTGGGCAAGAGAGCGTGACAATGTTGTGTATTCGATTGTGTTGAAGGCTTGTAGTGAGGTGAGGGATGTTATTGAAGGGAGGAAGGTGCATTGTGAGATTGTTAAGGCGGGGAGCCCCGATGGGTTTGTGTTGACTGGGTTGGTGGATGTGTATGCAAAGTGTGGGTGGATTGAGTGGTCCCGTGGGGTGTTTGACGGGATTGTGGAAAGGAGTGTGGTTTGTTGGACTTCGATGATTGTTGGGTATGTGCAGAATGAGTGTCCGGAAGATGGGTTGGTTTTGTTTAATAGGATGAGAGAGGAGATGGGTGAAGGGAACCAGTTTACGCTAGGTAGCGTGCTTACGGCTTGCACAAAGTTGAGAGCTTTGCACCAGGGAAAGTGGGTTCATGGATACTTGATTAAGAATGGTATTGAGGTTAATTCTGTGTTGGTGACGTCTCTTTTGGACATGTATGTCAAGTGCGGGGACATCAGAGATGCTCGTTTCATATTTGATGAGCATTCCATGATTGATCTTGTTTCGTGGACTGCAATGATTGTTGGGTACACGCAAAGCGGGTGCCCGTTGGAGGCTCTGAAGTTGTTTACGGATAAGAGATGGGTTGGTCTGTTGCCCAATTCTATAACCACTGCAAGTGTGCTTTCGTCTTGTGCACAATCAGGTAATTTGCATTTGGGAAGGTCAGTCCATGGTCTTGGGATTAAACTTGGGTTGGAAAATTCTACTGTGAGAAATGCTCTTGTTGATATGTACGCAAAATGCCATATGATTAGTGATGCTCGATATATCTTTGATACAACATTGGACAAGAATGTGATTACTTGGAGTTCAATTATTTGTGGGTATTCCCAAAACGGGTCTGCATATGAAGCCCTCCAACTGTTTCATCAAATGAGATCAGGGTCATTCTCACCTGATGCATTCACATTGGTAAGTGTCCTCTCAGCTTGTGCTTCCCTCGGTTTTCTTCAGGTTGGTTCATCACTTCATGCTTACTCGATAAAGGATGGCATATTAACTTCAAACCTGTATGCTGGCACTGCACTTCTAAATTTCTATGCCAAGTGTGGGGATGCTGAATCTGCTCGTCTAGTTTTTGATGGAATGAAAGAGAAGAACACTATAACGTGGAGTGCGATGATTGGTGGTTATGGAATCCAGGGTGACAGTAAAGGTTCCGTAGAACTTTTCAGTGATATGTTAAAGAAGCGTCTAGAGCCAAACGAAGATTATAACTTTGTGCCTTCTATGAAGCACTATGCATGTATGGTTGATCTCTTGGCTCGTGCTGGCAAACTTGAAGAAGCCTTGGAATTTATTGAGAAAATGCCGGTTCGACCAGATGTTAATTTGATTGGGGCTTTTCTCCACGGGTGTGGACTCTATTCAAGGTTTGATCTTGGCGAAGTGGCGATAAGAAGATTGCTAGAGTTGCATCCTTATGAAGCTTGCTATTATGTGCTAATGTGTAATCTTTATGCTTCAGACGGTAGATGGAGCCAGGTTAATCAGGTGAGAGAATTGATGAAACAGAGGGGTTTGAGCAAGTCCCAAGCATATAGCCAAGTGCAAATGGATTTCAGAAATGGCTTCATACCTGTTAAAGGCGCATGTGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

681

Amino Acids

76.26

Weight (kDa)

7.76

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	411 - 459	8.2e-10	PPR repeat family
PPR	PF01535	414 - 441	5.9e-06	PPR repeat
PPR_2	PF13041	513 - 550	4.3e-06	PPR repeat family
E_motif	PF20431	603 - 664	4.5e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03380
fragaria_vesca	FvH4_4g30510
malus_domestica	MD16G1065100.v1.1
prunus_persica	Prupe.1G281800_v2.0.a1
pyrus_communis	pycom13g05850 pycom16g05690
rosa_chinensis	RchiOBHm_Chr4g0438881
rosa_laevigata	RLG00000006322
rosa_multiflora	Rmu_co8498131.1_g000001 Rmu_sc0002505.1_g000022
rosa_roxburghii	Rroxscaffold_5G00379900
rosa_rugosa	Rorug04G0314000
rosa_samantha	Rh4AG364800 Rh4BG375900 Rh4CG390000 Rh4DG370600
rosa_wichuraiana	Rw0G007290 Rw0G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1656
AasI	GACNNNNNNGTC	1 cut(s)	875
AatII	GACGTC	1 cut(s)	860
AccB1I	GGYRCC	1 cut(s)	981
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	3 cut(s)	527, 885, 978
AcsI	RAATTY	3 cut(s)	1141, 1474, 1736
AcuI	CTGAAG	3 cut(s)	1019, 1376, 1890
AcyI	GRCGYC	1 cut(s)	857
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	5 cut(s)	222, 272, 365, 968, 1175
AfiI	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2027
AflIII	ACRYGT	2 cut(s)	273, 870
AgsI	TTSAA	9 cut(s)	53, 147, 160, 463, 494, 1254, 1446, 1724, 1812
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	3 cut(s)	792, 1581, 1923
AleI	CACNNNNGTG	1 cut(s)	1797
AloI	GAACNNNNNNTCC	2 cut(s)	789, 821
AluBI	AGCT	5 cut(s)	7, 210, 785, 1370, 1871
AluI	AGCT	5 cut(s)	7, 210, 785, 1370, 1871
Alw21I	GWGCWC	1 cut(s)	1078
Alw26I	GTCTC	1 cut(s)	864
Alw44I	GTGCAC	1 cut(s)	1074
Aor13HI	TCCGGA	1 cut(s)	682
ApaLI	GTGCAC	1 cut(s)	1074
ApoI	RAATTY	3 cut(s)	1141, 1474, 1736
ArsI	GACNNNNNNTTYG	2 cut(s)	847, 879
AspLEI	GCGC	1 cut(s)	2033
AspS9I	GGNCC	1 cut(s)	597
AsuC2I	CCSGG	2 cut(s)	301, 329
AsuHPI	GGTGA	6 cut(s)	490, 740, 865, 1326, 1598, 1948
AvaII	GGWCC	1 cut(s)	597
AxyI	CCTNAGG	1 cut(s)	194
BaeGI	GKGCMC	4 cut(s)	288, 301, 986, 1078
BanI	GGYRCC	1 cut(s)	981
BanII	GRGCYC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	1707
Bbv12I	GWGCWC	1 cut(s)	1078
BbvCI	CCTCAGC	1 cut(s)	356
BccI	CCATC	7 cut(s)	533, 683, 718, 1014, 1424, 1517, 1911
BceAI	ACGGC	2 cut(s)	241, 780
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	3 cut(s)	794, 1583, 1925
BciVI	GTATCC	1 cut(s)	806
BcnI	CCSGG	2 cut(s)	301, 329
BcoDI	GTCTC	1 cut(s)	864
BfaI	CTAG	4 cut(s)	749, 1514, 1637, 1850
BfuI	GTATCC	1 cut(s)	806
Bme1390I	CCNGG	5 cut(s)	301, 329, 794, 1583, 1925
Bme18I	GGWCC	1 cut(s)	597
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	597
BmiI	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 1922
BmrFI	CCNGG	5 cut(s)	301, 329, 794, 1583, 1925
BmrI	ACTGGG	2 cut(s)	127, 564
BmsI	GCATC	6 cut(s)	342, 889, 1189, 1330, 1486, 1867
BmuI	ACTGGG	2 cut(s)	127, 564
BplI	GAGNNNNNCTC	2 cut(s)	1144, 1176
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	99
BpuMI	CCSGG	2 cut(s)	301, 329
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	857
BsaJI	CCNNGG	7 cut(s)	601, 793, 1111, 1381, 1582, 1731, 1792
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2027
Bse118I	RCCGGY	1 cut(s)	1753
Bse1I	ACTGG	3 cut(s)	133, 559, 739
Bse21I	CCTNAGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	960
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	3 cut(s)	794, 1583, 1925
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	7 cut(s)	601, 793, 1111, 1381, 1582, 1731, 1792
BseGI	GGATG	7 cut(s)	417, 490, 571, 717, 1435, 1501, 1858
BseLI	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2027
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	3 cut(s)	96, 347, 1380
BseNI	ACTGG	3 cut(s)	133, 559, 739
BseRI	GAGGAG	2 cut(s)	401, 734
BseSI	GKGCMC	4 cut(s)	288, 301, 986, 1078
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	2 cut(s)	689, 1449
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	981
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	1078
BsiSI	CCGG	4 cut(s)	301, 329, 683, 1754
BslFI	GGGAC	3 cut(s)	583, 902, 1957
BslI	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2027
BsmAI	GTCTC	1 cut(s)	864
BsmBI	CGTCTC	1 cut(s)	864
BsmFI	GGGAC	3 cut(s)	583, 902, 1957
BsmI	GAATGC	2 cut(s)	922, 1343
Bsp1286I	GDGCHC	5 cut(s)	288, 301, 536, 986, 1078
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
Bsp19I	CCATGG	1 cut(s)	1111
BspACI	CCGC	3 cut(s)	527, 885, 978
BspCNI	CTCAG	3 cut(s)	97, 348, 1379
BspDI	ATCGAT	1 cut(s)	186
BspEI	TCCGGA	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 1922
BspT107I	GGYRCC	1 cut(s)	981
BsrDI	GCAATG	1 cut(s)	960
BsrFI	RCCGGY	1 cut(s)	1753
BsrI	ACTGG	3 cut(s)	133, 559, 739
BssAI	RCCGGY	1 cut(s)	1753
BssECI	CCNNGG	7 cut(s)	601, 793, 1111, 1381, 1582, 1731, 1792
BssMI	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
BssNI	GRCGYC	1 cut(s)	857
BssSI	CACGAG	1 cut(s)	1707
BssT1I	CCWWGG	2 cut(s)	1111, 1731
Bst2BI	CACGAG	1 cut(s)	1707
Bst2UI	CCWGG	3 cut(s)	794, 1583, 1925
Bst4CI	ACNGT	4 cut(s)	1150, 1305, 1592, 1913
BstACI	GRCGYC	1 cut(s)	857
BstAPI	GCANNNNNTGC	1 cut(s)	2039
BstC8I	GCNNGC	6 cut(s)	212, 758, 769, 1459, 1714, 1873
BstDEI	CTNAG	5 cut(s)	105, 194, 356, 1366, 2043
BstDSI	CCRYGG	3 cut(s)	601, 1111, 1792
BstENI	CCTNNNNNAGG	1 cut(s)	2025
BstF5I	GGATG	7 cut(s)	417, 490, 571, 717, 1435, 1501, 1858
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	2033
BstKTI	GATC	5 cut(s)	241, 937, 1322, 1699, 1822
BstMAI	GTCTC	1 cut(s)	864
BstMBI	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	6 cut(s)	1292, 1463, 1505, 1639, 1855, 2039
BstNI	CCWGG	3 cut(s)	794, 1583, 1925
BstNSI	RCATGY	3 cut(s)	874, 1689, 2037
BstSCI	CCNGG	5 cut(s)	299, 327, 792, 1581, 1923
BstSLI	GKGCMC	4 cut(s)	288, 301, 986, 1078
BstUI	CGCG	1 cut(s)	275
BstXI	CCANNNNNNTGG	2 cut(s)	1118, 1799
Bsu15I	ATCGAT	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	806
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	3 cut(s)	601, 1111, 1792
BtgZI	GCGATG	1 cut(s)	1574
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	7 cut(s)	417, 490, 571, 717, 1435, 1501, 1858
BtsI	GCAGTG	2 cut(s)	1050, 1461
BtsIMutI	CAGTG	3 cut(s)	1050, 1461, 1621
Cac8I	GCNNGC	6 cut(s)	212, 758, 769, 1459, 1714, 1873
CfoI	GCGC	1 cut(s)	2033
Cfr10I	RCCGGY	1 cut(s)	1753
Cfr13I	GGNCC	1 cut(s)	597
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	264, 1622
Csp6I	GTAC	5 cut(s)	221, 271, 364, 967, 1174
CviAII	CATG	9 cut(s)	172, 370, 809, 871, 928, 1112, 1412, 1686, 2034
CviQI	GTAC	5 cut(s)	221, 271, 364, 967, 1174
DdeI	CTNAG	5 cut(s)	105, 194, 356, 1366, 2043
DpnI	GATC	5 cut(s)	240, 936, 1321, 1698, 1821
DpnII	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
DraIII	CACNNNGTG	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	875
Eco130I	CCWWGG	2 cut(s)	1111, 1731
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	597
Eco57I	CTGAAG	3 cut(s)	1019, 1376, 1890
Eco81I	CCTNAGG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	2025
EcoRII	CCWGG	3 cut(s)	792, 1581, 1923
EcoT14I	CCWWGG	2 cut(s)	1111, 1731
EcoT22I	ATGCAT	2 cut(s)	1345, 1687
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	2 cut(s)	1111, 1731
Esp3I	CGTCTC	1 cut(s)	864
FaeI	CATG	9 cut(s)	175, 373, 812, 874, 931, 1115, 1415, 1689, 2037
FaqI	GGGAC	3 cut(s)	583, 902, 1957
FatI	CATG	9 cut(s)	171, 369, 808, 870, 927, 1111, 1411, 1685, 2033
FauI	CCCGC	3 cut(s)	520, 878, 971
FauNDI	CATATG	2 cut(s)	1188, 1288
FokI	GGATG	7 cut(s)	424, 497, 578, 724, 1442, 1508, 1845
FriOI	GRGCYC	1 cut(s)	536
FspBI	CTAG	4 cut(s)	749, 1514, 1637, 1850
GlaI	GCGC	1 cut(s)	2032
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	78
HapII	CCGG	4 cut(s)	301, 329, 683, 1754
HgaI	GACGC	2 cut(s)	264, 1622
HhaI	GCGC	1 cut(s)	2033
Hin1I	GRCGYC	1 cut(s)	857
Hin1II	CATG	9 cut(s)	175, 373, 812, 874, 931, 1115, 1415, 1689, 2037
Hin6I	GCGC	1 cut(s)	2031
HinP1I	GCGC	1 cut(s)	2031
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	1869
HinfI	GANTC	4 cut(s)	188, 1502, 1578, 1803
HpaII	CCGG	4 cut(s)	301, 329, 683, 1754
HphI	GGTGA	6 cut(s)	490, 740, 865, 1326, 1598, 1948
Hpy166II	GTNNAC	8 cut(s)	223, 552, 744, 948, 969, 1008, 1076, 1802
Hpy188I	TCNGA	4 cut(s)	896, 999, 1909, 2006
Hpy188III	TCNNGA	3 cut(s)	95, 683, 1637
Hpy8I	GTNNAC	8 cut(s)	223, 552, 744, 948, 969, 1008, 1076, 1802
Hpy99I	CGWCG	2 cut(s)	317, 346
HpyAV	CCTTC	7 cut(s)	166, 457, 488, 496, 725, 1095, 1677
HpyCH4III	ACNGT	4 cut(s)	1150, 1305, 1592, 1913
HpyCH4IV	ACGT	3 cut(s)	288, 857, 1550
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1292, 1463, 1505, 1639, 1855, 2039
HpyF3I	CTNAG	5 cut(s)	105, 194, 356, 1366, 2043
HpySE526I	ACGT	3 cut(s)	288, 857, 1550
Hsp92I	GRCGYC	1 cut(s)	857
Hsp92II	CATG	9 cut(s)	175, 373, 812, 874, 931, 1115, 1415, 1689, 2037
HspAI	GCGC	1 cut(s)	2031
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
LmnI	GCTCC	2 cut(s)	531, 1920
LweI	GCATC	6 cut(s)	342, 889, 1189, 1330, 1486, 1867
MaeI	CTAG	4 cut(s)	749, 1514, 1637, 1850
MaeII	ACGT	3 cut(s)	288, 857, 1550
MaeIII	GTNAC	4 cut(s)	248, 434, 853, 1586
MalI	GATC	5 cut(s)	240, 936, 1321, 1698, 1821
MboI	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
MboII	GAAGA	7 cut(s)	155, 698, 1382, 1549, 1661, 1736, 1854
MfeI	CAATTG	1 cut(s)	292
MhlI	GDGCHC	5 cut(s)	288, 301, 536, 986, 1078
MluI	ACGCGT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	1797
MmeI	TCCRAC	4 cut(s)	623, 969, 1116, 1324
Mph1103I	ATGCAT	2 cut(s)	1345, 1687
MroI	TCCGGA	1 cut(s)	682
MslI	CAYNNNNRTG	2 cut(s)	1797, 1863
MspI	CCGG	4 cut(s)	301, 329, 683, 1754
MspR9I	CCNGG	5 cut(s)	301, 329, 794, 1583, 1925
MunI	CAATTG	1 cut(s)	292
Mva1269I	GAATGC	2 cut(s)	922, 1343
MvaI	CCWGG	3 cut(s)	794, 1583, 1925
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	6 cut(s)	1292, 1463, 1505, 1639, 1855, 2039
NciI	CCSGG	2 cut(s)	301, 329
NcoI	CCATGG	1 cut(s)	1111
NdeI	CATATG	2 cut(s)	1188, 1288
NdeII	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
NlaIII	CATG	9 cut(s)	175, 373, 812, 874, 931, 1115, 1415, 1689, 2037
NlaIV	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 1922
NmuCI	GTSAC	4 cut(s)	248, 434, 853, 1586
NsiI	ATGCAT	2 cut(s)	1345, 1687
NspI	RCATGY	3 cut(s)	874, 1689, 2037
OliI	CACNNNNGTG	1 cut(s)	1797
PciI	ACATGT	1 cut(s)	870
PcsI	WCGNNNNNNNCGW	1 cut(s)	1556
PctI	GAATGC	2 cut(s)	922, 1343
PfeI	GAWTC	3 cut(s)	188, 1502, 1578
PleI	GAGTC	1 cut(s)	1797
PpsI	GAGTC	1 cut(s)	1797
PscI	ACATGT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	1656
Psp6I	CCWGG	3 cut(s)	792, 1581, 1923
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	3 cut(s)	792, 1581, 1923
PspN4I	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 1922
PspPI	GGNCC	1 cut(s)	597
RsaI	GTAC	5 cut(s)	222, 272, 365, 968, 1175
RsaNI	GTAC	5 cut(s)	221, 271, 364, 967, 1174
RseI	CAYNNNNRTG	2 cut(s)	1797, 1863
Sau3AI	GATC	5 cut(s)	238, 934, 1319, 1696, 1819
Sau96I	GGNCC	1 cut(s)	597
SchI	GAGTC	1 cut(s)	1797
ScrFI	CCNGG	5 cut(s)	301, 329, 794, 1583, 1925
SduI	GDGCHC	5 cut(s)	288, 301, 536, 986, 1078
SfaNI	GCATC	6 cut(s)	342, 889, 1189, 1330, 1486, 1867
SinI	GGWCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	2 cut(s)	1797, 1863
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SsiI	CCGC	3 cut(s)	527, 885, 978
SspMI	CTAG	4 cut(s)	749, 1514, 1637, 1850
StyD4I	CCNGG	5 cut(s)	299, 327, 792, 1581, 1923
StyI	CCWWGG	2 cut(s)	1111, 1731
TaaI	ACNGT	4 cut(s)	1150, 1305, 1592, 1913
TaiI	ACGT	3 cut(s)	291, 860, 1553
TaqI	TCGA	8 cut(s)	186, 312, 344, 452, 650, 1204, 1421, 1759
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	188, 1502, 1578
TscAI	CASTG	3 cut(s)	1057, 1468, 1621
TseFI	GTSAC	4 cut(s)	248, 434, 853, 1586
Tsp45I	GTSAC	4 cut(s)	248, 434, 853, 1586
TspGWI	ACGGA	2 cut(s)	1025, 1591
TspRI	CASTG	3 cut(s)	1057, 1468, 1621
VneI	GTGCAC	1 cut(s)	1074
VpaK11BI	GGWCC	1 cut(s)	597
XagI	CCTNNNNNAGG	1 cut(s)	2025
XapI	RAATTY	3 cut(s)	1141, 1474, 1736
XbaI	TCTAGA	1 cut(s)	1636
XceI	RCATGY	3 cut(s)	874, 1689, 2037
XspI	CTAG	4 cut(s)	749, 1514, 1637, 1850
ZraI	GACGTC	1 cut(s)	858
Zsp2I	ATGCAT	2 cut(s)	1345, 1687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.