Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G03380 |
| fragaria_vesca | FvH4_4g30510 |
| malus_domestica | MD16G1065100.v1.1 |
| prunus_persica | Prupe.1G281800_v2.0.a1 |
| pyrus_communis | pycom13g05850 pycom16g05690 |
| rosa_chinensis | RchiOBHm_Chr4g0438881 |
| rosa_laevigata | RLG00000006322 |
| rosa_multiflora | Rmu_co8498131.1_g000001 Rmu_sc0002505.1_g000022 |
| rosa_roxburghii | Rroxscaffold_5G00379900 |
| rosa_rugosa | Rorug04G0314000 |
| rosa_samantha | Rh4AG364800 Rh4BG375900 Rh4CG390000 Rh4DG370600 |
| rosa_wichuraiana | Rw0G007290 Rw0G016840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 81, 1740 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 875 |
| AatII | GACGTC | 1 cut(s) | 860 |
| AccB1I | GGYRCC | 1 cut(s) | 981 |
| AccII | CGCG | 2 cut(s) | 275, 1204 |
| AccIII | TCCGGA | 1 cut(s) | 682 |
| AciI | CCGC | 3 cut(s) | 409, 527, 978 |
| AcsI | RAATTY | 3 cut(s) | 1141, 1474, 1820 |
| AcuI | CTGAAG | 4 cut(s) | 1019, 1376, 1730, 1974 |
| AcyI | GRCGYC | 1 cut(s) | 857 |
| AdeI | CACNNNGTG | 1 cut(s) | 379 |
| AfaI | GTAC | 4 cut(s) | 222, 365, 968, 1175 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 689, 991, 1278, 1491, 2111 |
| AflIII | ACRYGT | 2 cut(s) | 273, 870 |
| AgsI | TTSAA | 9 cut(s) | 53, 147, 160, 463, 1254, 1446, 1720, 1808, 1896 |
| AjiI | CACGTC | 1 cut(s) | 289 |
| AjnI | CCWGG | 4 cut(s) | 792, 1581, 1731, 2007 |
| AleI | CACNNNNGTG | 1 cut(s) | 1881 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 789, 821 |
| AluBI | AGCT | 7 cut(s) | 7, 109, 210, 785, 1370, 1676, 1955 |
| AluI | AGCT | 7 cut(s) | 7, 109, 210, 785, 1370, 1676, 1955 |
| Alw21I | GWGCWC | 1 cut(s) | 1078 |
| Alw26I | GTCTC | 1 cut(s) | 864 |
| Alw44I | GTGCAC | 1 cut(s) | 1074 |
| Aor13HI | TCCGGA | 1 cut(s) | 682 |
| ApaLI | GTGCAC | 1 cut(s) | 1074 |
| ApoI | RAATTY | 3 cut(s) | 1141, 1474, 1820 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 847, 879 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1715 |
| AspLEI | GCGC | 2 cut(s) | 1204, 2117 |
| AspS9I | GGNCC | 2 cut(s) | 597, 1108 |
| AsuC2I | CCSGG | 1 cut(s) | 329 |
| AsuHPI | GGTGA | 6 cut(s) | 490, 740, 865, 1326, 1598, 2032 |
| AvaII | GGWCC | 2 cut(s) | 597, 1108 |
| AxyI | CCTNAGG | 1 cut(s) | 194 |
| BaeGI | GKGCMC | 4 cut(s) | 288, 301, 986, 1078 |
| BanI | GGYRCC | 1 cut(s) | 981 |
| BanII | GRGCYC | 1 cut(s) | 536 |
| BauI | CACGAG | 1 cut(s) | 1791 |
| Bbv12I | GWGCWC | 1 cut(s) | 1078 |
| BbvCI | CCTCAGC | 1 cut(s) | 356 |
| BccI | CCATC | 8 cut(s) | 533, 608, 683, 718, 1014, 1424, 1517, 1995 |
| BceAI | ACGGC | 1 cut(s) | 780 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 334, 368 |
| BciT130I | CCWGG | 4 cut(s) | 794, 1583, 1733, 2009 |
| BciVI | GTATCC | 1 cut(s) | 806 |
| BcnI | CCSGG | 1 cut(s) | 329 |
| BcoDI | GTCTC | 1 cut(s) | 864 |
| BfaI | CTAG | 3 cut(s) | 1514, 1637, 1934 |
| BfuI | GTATCC | 1 cut(s) | 806 |
| Bme1390I | CCNGG | 5 cut(s) | 329, 794, 1583, 1733, 2009 |
| Bme18I | GGWCC | 2 cut(s) | 597, 1108 |
| BmgBI | CACGTC | 1 cut(s) | 289 |
| BmgT120I | GGNCC | 2 cut(s) | 597, 1108 |
| BmiI | GGNNCC | 6 cut(s) | 533, 599, 737, 983, 1600, 2006 |
| BmrFI | CCNGG | 5 cut(s) | 329, 794, 1583, 1733, 2009 |
| BmrI | ACTGGG | 2 cut(s) | 127, 564 |
| BmsI | GCATC | 6 cut(s) | 342, 889, 1189, 1330, 1486, 1951 |
| BmuI | ACTGGG | 2 cut(s) | 127, 564 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1144, 1176, 1316, 1348 |
| BpmI | CTGGAG | 1 cut(s) | 78 |
| Bpu10I | CCTNAGC | 1 cut(s) | 356 |
| BpuEI | CTTGAG | 2 cut(s) | 99, 125 |
| BpuMI | CCSGG | 1 cut(s) | 329 |
| BsaHI | GRCGYC | 1 cut(s) | 857 |
| BsaJI | CCNNGG | 7 cut(s) | 601, 793, 1111, 1381, 1582, 1815, 1876 |
| BsaWI | WCCGGW | 1 cut(s) | 682 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 689, 991, 1278, 1491, 2111 |
| Bse1I | ACTGG | 4 cut(s) | 133, 559, 739, 1838 |
| Bse21I | CCTNAGG | 1 cut(s) | 194 |
| Bse3DI | GCAATG | 1 cut(s) | 960 |
| BseAI | TCCGGA | 1 cut(s) | 682 |
| BseBI | CCWGG | 4 cut(s) | 794, 1583, 1733, 2009 |
| BseDI | CCNNGG | 7 cut(s) | 601, 793, 1111, 1381, 1582, 1815, 1876 |
| BseGI | GGATG | 9 cut(s) | 417, 490, 571, 717, 1204, 1435, 1501, 1886, 1942 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 689, 991, 1278, 1491, 2111 |
| BseMI | GCAATG | 1 cut(s) | 960 |
| BseMII | CTCAG | 2 cut(s) | 347, 1380 |
| BseNI | ACTGG | 4 cut(s) | 133, 559, 739, 1838 |
| BseRI | GAGGAG | 4 cut(s) | 158, 401, 643, 734 |
| BseSI | GKGCMC | 4 cut(s) | 288, 301, 986, 1078 |
| BseYI | CCCAGC | 1 cut(s) | 151 |
| BsgI | GTGCAG | 2 cut(s) | 689, 1449 |
| Bsh1236I | CGCG | 2 cut(s) | 275, 1204 |
| BshNI | GGYRCC | 1 cut(s) | 981 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1078 |
| BsiSI | CCGG | 2 cut(s) | 329, 683 |
| BslFI | GGGAC | 3 cut(s) | 583, 902, 2041 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 689, 991, 1278, 1491, 2111 |
| BsmAI | GTCTC | 1 cut(s) | 864 |
| BsmBI | CGTCTC | 1 cut(s) | 864 |
| BsmFI | GGGAC | 3 cut(s) | 583, 902, 2041 |
| BsmI | GAATGC | 1 cut(s) | 922 |
| Bsp1286I | GDGCHC | 5 cut(s) | 288, 301, 536, 986, 1078 |
| Bsp13I | TCCGGA | 1 cut(s) | 682 |
| Bsp143I | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| Bsp19I | CCATGG | 1 cut(s) | 1111 |
| BspACI | CCGC | 3 cut(s) | 409, 527, 978 |
| BspCNI | CTCAG | 2 cut(s) | 348, 1379 |
| BspEI | TCCGGA | 1 cut(s) | 682 |
| BspFNI | CGCG | 2 cut(s) | 275, 1204 |
| BspLI | GGNNCC | 6 cut(s) | 533, 599, 737, 983, 1600, 2006 |
| BspT107I | GGYRCC | 1 cut(s) | 981 |
| BsrDI | GCAATG | 1 cut(s) | 960 |
| BsrI | ACTGG | 4 cut(s) | 133, 559, 739, 1838 |
| BssECI | CCNNGG | 7 cut(s) | 601, 793, 1111, 1381, 1582, 1815, 1876 |
| BssMI | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| BssNI | GRCGYC | 1 cut(s) | 857 |
| BssSI | CACGAG | 1 cut(s) | 1791 |
| BssT1I | CCWWGG | 2 cut(s) | 1111, 1815 |
| Bst2BI | CACGAG | 1 cut(s) | 1791 |
| Bst2UI | CCWGG | 4 cut(s) | 794, 1583, 1733, 2009 |
| Bst4CI | ACNGT | 2 cut(s) | 1592, 1997 |
| BstACI | GRCGYC | 1 cut(s) | 857 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2123 |
| BstC8I | GCNNGC | 5 cut(s) | 212, 769, 1459, 1798, 1957 |
| BstDEI | CTNAG | 4 cut(s) | 194, 356, 1366, 2127 |
| BstDSI | CCRYGG | 3 cut(s) | 601, 1111, 1876 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2109 |
| BstF5I | GGATG | 9 cut(s) | 417, 490, 571, 717, 1204, 1435, 1501, 1886, 1942 |
| BstFNI | CGCG | 2 cut(s) | 275, 1204 |
| BstHHI | GCGC | 2 cut(s) | 1204, 2117 |
| BstKTI | GATC | 6 cut(s) | 241, 657, 937, 1322, 1783, 1906 |
| BstMAI | GTCTC | 1 cut(s) | 864 |
| BstMBI | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1292, 1463, 1505, 1639, 1939, 2123 |
| BstNI | CCWGG | 4 cut(s) | 794, 1583, 1733, 2009 |
| BstNSI | RCATGY | 3 cut(s) | 874, 1773, 2121 |
| BstSCI | CCNGG | 5 cut(s) | 327, 792, 1581, 1731, 2007 |
| BstSLI | GKGCMC | 4 cut(s) | 288, 301, 986, 1078 |
| BstUI | CGCG | 2 cut(s) | 275, 1204 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1118, 1883 |
| Bsu36I | CCTNAGG | 1 cut(s) | 194 |
| BsuI | GTATCC | 1 cut(s) | 806 |
| BtgI | CCRYGG | 3 cut(s) | 601, 1111, 1876 |
| BtgZI | GCGATG | 1 cut(s) | 1574 |
| BtrI | CACGTC | 1 cut(s) | 289 |
| BtsCI | GGATG | 9 cut(s) | 417, 490, 571, 717, 1204, 1435, 1501, 1886, 1942 |
| BtsI | GCAGTG | 2 cut(s) | 1050, 1461 |
| BtsIMutI | CAGTG | 3 cut(s) | 1050, 1461, 1621 |
| Cac8I | GCNNGC | 5 cut(s) | 212, 769, 1459, 1798, 1957 |
| CfoI | GCGC | 2 cut(s) | 1204, 2117 |
| Cfr13I | GGNCC | 2 cut(s) | 597, 1108 |
| CseI | GACGC | 2 cut(s) | 264, 1622 |
| Csp6I | GTAC | 4 cut(s) | 221, 364, 967, 1174 |
| CviQI | GTAC | 4 cut(s) | 221, 364, 967, 1174 |
| DdeI | CTNAG | 4 cut(s) | 194, 356, 1366, 2127 |
| DpnI | GATC | 6 cut(s) | 240, 656, 936, 1321, 1782, 1905 |
| DpnII | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| DraIII | CACNNNGTG | 1 cut(s) | 379 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 875 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 875 |
| EciI | GGCGGA | 1 cut(s) | 424 |
| Eco130I | CCWWGG | 2 cut(s) | 1111, 1815 |
| Eco24I | GRGCYC | 1 cut(s) | 536 |
| Eco47I | GGWCC | 2 cut(s) | 597, 1108 |
| Eco57I | CTGAAG | 4 cut(s) | 1019, 1376, 1730, 1974 |
| Eco81I | CCTNAGG | 1 cut(s) | 194 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2109 |
| EcoRII | CCWGG | 4 cut(s) | 792, 1581, 1731, 2007 |
| EcoT14I | CCWWGG | 2 cut(s) | 1111, 1815 |
| EcoT22I | ATGCAT | 2 cut(s) | 1345, 1771 |
| EcoT38I | GRGCYC | 1 cut(s) | 536 |
| ErhI | CCWWGG | 2 cut(s) | 1111, 1815 |
| Esp3I | CGTCTC | 1 cut(s) | 864 |
| FaqI | GGGAC | 3 cut(s) | 583, 902, 2041 |
| FauI | CCCGC | 2 cut(s) | 520, 971 |
| FauNDI | CATATG | 3 cut(s) | 1095, 1188, 1288 |
| FokI | GGATG | 9 cut(s) | 424, 497, 578, 724, 1211, 1442, 1508, 1893, 1929 |
| FriOI | GRGCYC | 1 cut(s) | 536 |
| FspBI | CTAG | 3 cut(s) | 1514, 1637, 1934 |
| GlaI | GCGC | 2 cut(s) | 1203, 2116 |
| GsaI | CCCAGC | 1 cut(s) | 155 |
| GsuI | CTGGAG | 1 cut(s) | 78 |
| HapII | CCGG | 2 cut(s) | 329, 683 |
| HgaI | GACGC | 2 cut(s) | 264, 1622 |
| HhaI | GCGC | 2 cut(s) | 1204, 2117 |
| Hin1I | GRCGYC | 1 cut(s) | 857 |
| Hin6I | GCGC | 2 cut(s) | 1202, 2115 |
| HinP1I | GCGC | 2 cut(s) | 1202, 2115 |
| HincII | GTYRAC | 1 cut(s) | 552 |
| HindII | GTYRAC | 1 cut(s) | 552 |
| HindIII | AAGCTT | 1 cut(s) | 1953 |
| HinfI | GANTC | 4 cut(s) | 1325, 1502, 1578, 1887 |
| HpaII | CCGG | 2 cut(s) | 329, 683 |
| HphI | GGTGA | 6 cut(s) | 490, 740, 865, 1326, 1598, 2032 |
| Hpy166II | GTNNAC | 6 cut(s) | 552, 744, 969, 1008, 1076, 1886 |
| Hpy188I | TCNGA | 6 cut(s) | 896, 999, 1324, 1710, 1993, 2090 |
| Hpy188III | TCNNGA | 3 cut(s) | 95, 683, 1637 |
| Hpy8I | GTNNAC | 6 cut(s) | 552, 744, 969, 1008, 1076, 1886 |
| Hpy99I | CGWCG | 2 cut(s) | 317, 346 |
| HpyAV | CCTTC | 8 cut(s) | 166, 457, 488, 496, 725, 1095, 1697, 1761 |
| HpyCH4III | ACNGT | 2 cut(s) | 1592, 1997 |
| HpyCH4IV | ACGT | 4 cut(s) | 288, 746, 857, 1550 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1292, 1463, 1505, 1639, 1939, 2123 |
| HpyF3I | CTNAG | 4 cut(s) | 194, 356, 1366, 2127 |
| HpySE526I | ACGT | 4 cut(s) | 288, 746, 857, 1550 |
| Hsp92I | GRCGYC | 1 cut(s) | 857 |
| HspAI | GCGC | 2 cut(s) | 1202, 2115 |
| Kpn2I | TCCGGA | 1 cut(s) | 682 |
| Kzo9I | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| LmnI | GCTCC | 2 cut(s) | 531, 2004 |
| LweI | GCATC | 6 cut(s) | 342, 889, 1189, 1330, 1486, 1951 |
| MaeI | CTAG | 3 cut(s) | 1514, 1637, 1934 |
| MaeII | ACGT | 4 cut(s) | 288, 746, 857, 1550 |
| MaeIII | GTNAC | 5 cut(s) | 248, 434, 853, 905, 1586 |
| MalI | GATC | 6 cut(s) | 240, 656, 936, 1321, 1782, 1905 |
| MboI | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| MboII | GAAGA | 7 cut(s) | 155, 698, 1382, 1549, 1648, 1820, 1938 |
| MfeI | CAATTG | 1 cut(s) | 292 |
| MhlI | GDGCHC | 5 cut(s) | 288, 301, 536, 986, 1078 |
| MluI | ACGCGT | 1 cut(s) | 273 |
| MlyI | GAGTC | 2 cut(s) | 1334, 1881 |
| MmeI | TCCRAC | 4 cut(s) | 623, 969, 1116, 1324 |
| Mph1103I | ATGCAT | 2 cut(s) | 1345, 1771 |
| MroI | TCCGGA | 1 cut(s) | 682 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1715 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1881, 1947 |
| MspI | CCGG | 2 cut(s) | 329, 683 |
| MspR9I | CCNGG | 5 cut(s) | 329, 794, 1583, 1733, 2009 |
| MunI | CAATTG | 1 cut(s) | 292 |
| Mva1269I | GAATGC | 1 cut(s) | 922 |
| MvaI | CCWGG | 4 cut(s) | 794, 1583, 1733, 2009 |
| MvnI | CGCG | 2 cut(s) | 275, 1204 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1292, 1463, 1505, 1639, 1939, 2123 |
| NciI | CCSGG | 1 cut(s) | 329 |
| NcoI | CCATGG | 1 cut(s) | 1111 |
| NdeI | CATATG | 3 cut(s) | 1095, 1188, 1288 |
| NdeII | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| NlaIV | GGNNCC | 6 cut(s) | 533, 599, 737, 983, 1600, 2006 |
| NmuCI | GTSAC | 4 cut(s) | 248, 434, 853, 1586 |
| NsiI | ATGCAT | 2 cut(s) | 1345, 1771 |
| NspI | RCATGY | 3 cut(s) | 874, 1773, 2121 |
| OliI | CACNNNNGTG | 1 cut(s) | 1881 |
| PciI | ACATGT | 1 cut(s) | 870 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1556 |
| PctI | GAATGC | 1 cut(s) | 922 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1715 |
| PfeI | GAWTC | 2 cut(s) | 1502, 1578 |
| PleI | GAGTC | 2 cut(s) | 1333, 1881 |
| PpsI | GAGTC | 2 cut(s) | 1333, 1881 |
| PscI | ACATGT | 1 cut(s) | 870 |
| PsiI | TTATAA | 2 cut(s) | 81, 1740 |
| Psp6I | CCWGG | 4 cut(s) | 792, 1581, 1731, 2007 |
| PspFI | CCCAGC | 1 cut(s) | 151 |
| PspGI | CCWGG | 4 cut(s) | 792, 1581, 1731, 2007 |
| PspN4I | GGNNCC | 6 cut(s) | 533, 599, 737, 983, 1600, 2006 |
| PspPI | GGNCC | 2 cut(s) | 597, 1108 |
| RsaI | GTAC | 4 cut(s) | 222, 365, 968, 1175 |
| RsaNI | GTAC | 4 cut(s) | 221, 364, 967, 1174 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1881, 1947 |
| Sau3AI | GATC | 6 cut(s) | 238, 654, 934, 1319, 1780, 1903 |
| Sau96I | GGNCC | 2 cut(s) | 597, 1108 |
| SchI | GAGTC | 2 cut(s) | 1334, 1881 |
| ScrFI | CCNGG | 5 cut(s) | 329, 794, 1583, 1733, 2009 |
| SduI | GDGCHC | 5 cut(s) | 288, 301, 536, 986, 1078 |
| SfaNI | GCATC | 6 cut(s) | 342, 889, 1189, 1330, 1486, 1951 |
| SinI | GGWCC | 2 cut(s) | 597, 1108 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1881, 1947 |
| SmlI | CTYRAG | 2 cut(s) | 104, 114 |
| SmoI | CTYRAG | 2 cut(s) | 104, 114 |
| SsiI | CCGC | 3 cut(s) | 409, 527, 978 |
| SspMI | CTAG | 3 cut(s) | 1514, 1637, 1934 |
| StyD4I | CCNGG | 5 cut(s) | 327, 792, 1581, 1731, 2007 |
| StyI | CCWWGG | 2 cut(s) | 1111, 1815 |
| TaaI | ACNGT | 2 cut(s) | 1592, 1997 |
| TaiI | ACGT | 4 cut(s) | 291, 749, 860, 1553 |
| TaqI | TCGA | 7 cut(s) | 233, 312, 344, 452, 650, 1421, 1843 |
| TaqII | GACCGA | 1 cut(s) | 1096 |
| TatI | WGTACW | 1 cut(s) | 220 |
| TfiI | GAWTC | 2 cut(s) | 1502, 1578 |
| TscAI | CASTG | 3 cut(s) | 1057, 1468, 1621 |
| TseFI | GTSAC | 4 cut(s) | 248, 434, 853, 1586 |
| Tsp45I | GTSAC | 4 cut(s) | 248, 434, 853, 1586 |
| TspGWI | ACGGA | 4 cut(s) | 1025, 1591, 1893, 2053 |
| TspRI | CASTG | 3 cut(s) | 1057, 1468, 1621 |
| VneI | GTGCAC | 1 cut(s) | 1074 |
| VpaK11BI | GGWCC | 2 cut(s) | 597, 1108 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2109 |
| XapI | RAATTY | 3 cut(s) | 1141, 1474, 1820 |
| XbaI | TCTAGA | 1 cut(s) | 1636 |
| XceI | RCATGY | 3 cut(s) | 874, 1773, 2121 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1715 |
| XspI | CTAG | 3 cut(s) | 1514, 1637, 1934 |
| ZraI | GACGTC | 1 cut(s) | 858 |
| Zsp2I | ATGCAT | 2 cut(s) | 1345, 1771 |