Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013363

Physical Location & Seq

Genomic Coordinates Reverse (-)

3642206 .. 3643722

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGGACGGCGGTGAAGAAATTCGTCTCCCCCTTACATCTGCAAATACCCAATACGCCCTTACGTCAGGGTCGGACTCTGACGCATGCCATCTACCAATCACCACCGTTGGAGCCACCCGACCTTTCTCAAACCATAGCGTCGACGCACGCGGTGTTTTCGAACCCGTGTTTTAATCTTCTCGTTTTGTGCAGGAACATCGATTCCCTGAAGAAAGTCCACAGCTTGCTCGTCCTACACGGCCTCGCCGACGATCTCCTTTGCCGAACAAAATTGATCAGTTTATATGGGTCATTTGGGTACATCAAGTGTGCCCGGTATCTGTTCGATAAAATGCCAAGCCCAGATTTTTATTCGTGGAAAGTGATGCTGAGGTGGTACTTTATGCACAATTTGTATGAAGAGGTTATAGGGTTTTATAATCGTATGAGAATGTGCGTAAGAGAGCATGACAACGTTGTTTTCTCGATTGTGTTGAAGGCGTGTAGTGAGTTGCGAGATTTTGATGAAGGGAGGAAGGTGCACTGCCGGATTGTTAAGGTGGCAAGTCCTGATAGTTTCGTGTTGACGGGTTTGGTGGATGTGTATGCGAAGTGTGGATGGATTGAGTGTTCTCAGTTGGGTATGTGCAAAATGATTGTCCGGAAGATGGGTTGGTCTTCGTACTTACGGCGTGTACAAATTTTGTGGGACCGATCTTGTTTCATGGACAGCAATGATTGTAGGGAAATGGGTTGGTCTCTTGCCCAATTCTATAACTACTGCAAGTGTGTCAATCCACGGTCTTGGGATAAAACTTGGGTTGGAGGAACCTACTGTGAGAAATGCTCTGGTGGACATGTATGCAAAATGCCATATGATTGCTTGCGCTTCCCTTGGTTTTCTTCCAGTTGGTTCATCGCTTCATGCTCACTCCATAAAGGATGGCCTATTAACTGCAAATATCTATGTTGGCACTGCACTTTTAAACTTCTACGCCAAGTGCGGGGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

332

Amino Acids

38.64

Weight (kDa)

9.11

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03380
fragaria_vesca	FvH4_4g30510
malus_domestica	MD16G1065100.v1.1
prunus_persica	Prupe.1G281800_v2.0.a1
pyrus_communis	pycom13g05850 pycom16g05690
rosa_chinensis	RchiOBHm_Chr4g0438881
rosa_laevigata	RLG00000006322
rosa_multiflora	Rmu_co8498131.1_g000001 Rmu_sc0002505.1_g000022
rosa_roxburghii	Rroxscaffold_5G00379900
rosa_rugosa	Rorug04G0314000
rosa_samantha	Rh4AG364800 Rh4BG375900 Rh4CG390000 Rh4DG370600
rosa_wichuraiana	Rw0G007290 Rw0G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	642
AciI	CCGC	3 cut(s)	11, 152, 985
AclI	AACGTT	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	20, 681
AcuI	CTGAAG	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	4 cut(s)	302, 380, 665, 678
AfiI	CCNNNNNNNGG	2 cut(s)	649, 985
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	1 cut(s)	478
AloI	GAACNNNNNNTCC	4 cut(s)	188, 220, 595, 627
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	2 cut(s)	31, 744
Alw44I	GTGCAC	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	642
AoxI	GGCC	2 cut(s)	241, 926
ApaLI	GTGCAC	1 cut(s)	521
ApoI	RAATTY	2 cut(s)	20, 681
ArsI	GACNNNNNNTTYG	2 cut(s)	624, 656
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	1 cut(s)	691
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	25, 93
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	691
BaeGI	GKGCMC	2 cut(s)	316, 525
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	525
BbvCI	CCTCAGC	1 cut(s)	371
BccI	CCATC	4 cut(s)	98, 594, 643, 918
BceAI	ACGGC	3 cut(s)	24, 256, 686
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	31, 744
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	3 cut(s)	114, 692, 811
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	357, 980
BpiI	GAAGAC	1 cut(s)	651
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	779, 875
BsaWI	WCCGGW	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	2 cut(s)	649, 985
Bse1I	ACTGG	1 cut(s)	888
Bse3DI	GCAATG	1 cut(s)	721
BseAI	TCCGGA	1 cut(s)	642
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	779, 875
BseGI	GGATG	4 cut(s)	586, 605, 929, 995
BseLI	CCNNNNNNNGG	2 cut(s)	649, 985
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	362, 629
BseNI	ACTGG	1 cut(s)	888
BseSI	GKGCMC	2 cut(s)	316, 525
BsgI	GTGCAG	2 cut(s)	211, 943
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	243, 928
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	525
BsiSI	CCGG	3 cut(s)	316, 529, 643
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	2 cut(s)	649, 985
BsmAI	GTCTC	2 cut(s)	31, 744
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	243, 928
Bso31I	GGTCTC	1 cut(s)	744
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	316, 525
Bsp13I	TCCGGA	1 cut(s)	642
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	3 cut(s)	253, 276, 695
BspACI	CCGC	3 cut(s)	11, 152, 985
BspANI	GGCC	2 cut(s)	243, 928
BspCNI	CTCAG	2 cut(s)	363, 628
BspDI	ATCGAT	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	642
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	114, 692, 811
BspT104I	TTCGAA	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	888
BssECI	CCNNGG	2 cut(s)	779, 875
BssMI	GATC	3 cut(s)	253, 276, 695
BssT1I	CCWWGG	1 cut(s)	875
Bst4CI	ACNGT	3 cut(s)	108, 783, 818
Bst6I	CTCTTC	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	676
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	4 cut(s)	87, 150, 227, 866
BstDEI	CTNAG	2 cut(s)	371, 615
BstDSI	CCRYGG	1 cut(s)	779
BstF5I	GGATG	4 cut(s)	586, 605, 929, 995
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	3 cut(s)	256, 279, 698
BstMAI	GTCTC	2 cut(s)	31, 744
BstMBI	GATC	3 cut(s)	253, 276, 695
BstNSI	RCATGY	2 cut(s)	89, 842
BstSCI	CCNGG	1 cut(s)	314
BstSLI	GKGCMC	2 cut(s)	316, 525
BstUI	CGCG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	786
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	243, 928
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	779
BtgZI	GCGATG	1 cut(s)	883
BtsCI	GGATG	4 cut(s)	586, 605, 929, 995
BtsI	GCAGTG	2 cut(s)	523, 955
BtsIMutI	CAGTG	2 cut(s)	523, 955
Cac8I	GCNNGC	4 cut(s)	87, 150, 227, 866
CfoI	GCGC	1 cut(s)	870
Cfr13I	GGNCC	1 cut(s)	691
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	3 cut(s)	91, 129, 154
Csp6I	GTAC	4 cut(s)	301, 379, 664, 677
CspCI	CAANNNNNGTGG	2 cut(s)	668, 703
CviAII	CATG	5 cut(s)	86, 449, 706, 839, 906
CviJI	RGCY	5 cut(s)	115, 225, 243, 342, 928
CviKI_1	RGCY	5 cut(s)	115, 225, 243, 342, 928
CviQI	GTAC	4 cut(s)	301, 379, 664, 677
DdeI	CTNAG	2 cut(s)	371, 615
DpnI	GATC	3 cut(s)	255, 278, 697
DpnII	GATC	3 cut(s)	253, 276, 695
DraI	TTTAAA	1 cut(s)	967
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	875
Eco31I	GGTCTC	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	875
ErhI	CCWWGG	1 cut(s)	875
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	5 cut(s)	89, 452, 709, 842, 909
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	5 cut(s)	85, 448, 705, 838, 905
FauI	CCCGC	1 cut(s)	978
FauNDI	CATATG	1 cut(s)	856
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	143
FokI	GGATG	3 cut(s)	593, 612, 936
GlaI	GCGC	1 cut(s)	869
HaeIII	GGCC	2 cut(s)	243, 928
HapII	CCGG	3 cut(s)	316, 529, 643
HgaI	GACGC	3 cut(s)	91, 129, 154
HhaI	GCGC	1 cut(s)	870
Hin1II	CATG	5 cut(s)	89, 452, 709, 842, 909
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HincII	GTYRAC	2 cut(s)	144, 567
HindII	GTYRAC	2 cut(s)	144, 567
HinfI	GANTC	2 cut(s)	76, 203
HpaII	CCGG	3 cut(s)	316, 529, 643
HphI	GGTGA	2 cut(s)	25, 93
Hpy166II	GTNNAC	6 cut(s)	144, 220, 523, 567, 677, 836
Hpy188I	TCNGA	2 cut(s)	75, 81
Hpy188III	TCNNGA	3 cut(s)	466, 551, 643
Hpy8I	GTNNAC	6 cut(s)	144, 220, 523, 567, 677, 836
Hpy99I	CGWCG	3 cut(s)	145, 148, 254
HpyAV	CCTTC	3 cut(s)	472, 503, 511
HpyCH4III	ACNGT	3 cut(s)	108, 783, 818
HpyCH4IV	ACGT	2 cut(s)	64, 456
HpyCH4V	TGCA	9 cut(s)	43, 192, 388, 523, 630, 765, 846, 939, 960
HpyF3I	CTNAG	2 cut(s)	371, 615
HpySE526I	ACGT	2 cut(s)	64, 456
Hsp92II	CATG	5 cut(s)	89, 452, 709, 842, 909
HspAI	GCGC	1 cut(s)	868
Kpn2I	TCCGGA	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	253, 276, 695
LmnI	GCTCC	1 cut(s)	112
LweI	GCATC	2 cut(s)	357, 980
MaeII	ACGT	2 cut(s)	64, 456
MalI	GATC	3 cut(s)	255, 278, 697
MboI	GATC	3 cut(s)	253, 276, 695
MboII	GAAGA	7 cut(s)	28, 170, 223, 413, 651, 658, 876
MhlI	GDGCHC	2 cut(s)	316, 525
MluCI	AATT	5 cut(s)	20, 272, 391, 681, 749
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	3 cut(s)	53, 90, 784
MnlI	CCTC	5 cut(s)	254, 366, 397, 507, 800
MroI	TCCGGA	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	4 cut(s)	174, 537, 933, 966
MspI	CCGG	3 cut(s)	316, 529, 643
MspR9I	CCNGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	316
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	3 cut(s)	253, 276, 695
NlaIII	CATG	5 cut(s)	89, 452, 709, 842, 909
NlaIV	GGNNCC	3 cut(s)	114, 692, 811
NspI	RCATGY	2 cut(s)	89, 842
NspV	TTCGAA	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	89
PciI	ACATGT	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	1 cut(s)	838
PsiI	TTATAA	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	456
PspN4I	GGNNCC	3 cut(s)	114, 692, 811
PspPI	GGNCC	1 cut(s)	691
RsaI	GTAC	4 cut(s)	302, 380, 665, 678
RsaNI	GTAC	4 cut(s)	301, 379, 664, 677
SalI	GTCGAC	1 cut(s)	142
SaqAI	TTAA	4 cut(s)	174, 537, 933, 966
Sau3AI	GATC	3 cut(s)	253, 276, 695
Sau96I	GGNCC	1 cut(s)	691
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	2 cut(s)	316, 525
SetI	ASST	9 cut(s)	67, 126, 227, 377, 408, 459, 522, 543, 815
SfaNI	GCATC	2 cut(s)	357, 980
SfuI	TTCGAA	1 cut(s)	161
SgrDI	CGTCGACG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	691
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	5 cut(s)	20, 272, 391, 681, 749
SsiI	CCGC	3 cut(s)	11, 152, 985
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	875
TaaI	ACNGT	3 cut(s)	108, 783, 818
TaiI	ACGT	2 cut(s)	67, 459
TaqI	TCGA	5 cut(s)	143, 161, 201, 327, 467
TaqII	GACCGA	1 cut(s)	708
TasI	AATT	5 cut(s)	20, 272, 391, 681, 749
TatI	WGTACW	1 cut(s)	676
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	4 cut(s)	174, 537, 933, 966
Tru9I	TTAA	4 cut(s)	174, 537, 933, 966
TscAI	CASTG	2 cut(s)	530, 962
TspDTI	ATGAA	5 cut(s)	414, 522, 694, 886, 894
TspRI	CASTG	2 cut(s)	530, 962
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	691
XapI	RAATTY	2 cut(s)	20, 681
XceI	RCATGY	2 cut(s)	89, 842
XmiI	GTMKAC	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.