Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013363

Physical Location & Seq

Genomic Coordinates Reverse (-)

64051845 .. 64054910

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGAAGCTCATCTCTAACCTACACAAACAAATACCCAGAAACCCTTTACTTCAATTACGAACTCTAACCCATTTCATCTATAACCCACCACCTCCAGACCCACCTGAGCTTTCTCAAGCCAAAGCCTCAACCCAGTCAGTCTTTTCAAACCCAGCCTTCAATCTTCTCGTCATGTGTAGAAACATCGATTCCCTTAGGAAAGTTCATAGCTTTCTTGTAGTACATGGCTTGTCGAACGATCTTGTTTGTCACACCAAATTGATTAGCCTGTACGCGTCATTTGGGCACGTCAATTGTGCCCGGTTGGTGTTCGACGAAATGCCAAGCCCGGATTTTTATTCGTCGAAAGTGATGCTGAGGTGGTACTTCATGCACAATGTGTATGAGGAGGTTGTGGGGTTGTTTAGGCGGATGAGAATGTGGGTTAGAGAGCGTGACAATGTTGTGTATTCGATTGTGTTGAAGGCGTGTAGTGAGGTGAGGGATGTTAATGAAGGGAGGAAGGTGCATTGTGAGATTGTTAAGGTGGGGAGCCCCGATGGGTTTGTGTTGACTGGGTTGGTGGATGTGTATGCAAAGTGTGGGTGGATTGAGTGGTCCCGTGGGGTGTTTGATGGGATTGTGGAAAGGAGTGTGGTTTGTTGGACTTCGATGATTGTTGGGTATGTGCAGAATGAGTGTCCGGAAGATGGGTTGGTTTTGTTTAATAGGATGAGAGAGGAGATGGGTGAAGGGAACCAGTTTACGCTGGGTAGTGTGCTTACGGCTTGCACAAAGTTGAGAGCTTTGCACCAGGGAAAGTGGGTTCATGGATGCTTGATTAAGAACGGTATTGAGGTTAATTCTGTGTTGGTGACGTCTCTTTTGGACATGTATGTCAAGTGCGGGGACATCAGAGATGCTCGTTTCATATTTGATGAGCATTCCATGATTGATCTTGTTTCATGGACTGCAATGATTGTTGGGTACACACAAAGCGGGTGCCCGTTGGAGGCTCTGAAGTTGTTTACGGATAAGAGATGGGTTGGTCTGTTGCCCAATTCTATAACCACTGCAAGTGTGCTTTCGTCTTGTGCACAATCAGGTAATTTGCATACGGGAAGGTCAGTCCATGGTCTTGGGATTAAACTTGGGTTGGAAAATTCTACTGTGAGAAATGCTCTTGTTGATATGTACGCAAAATGCCATATGATTAGTGATGCTCGATATATCTTTGATACAACATTGGACAAGAATGTGATTACTTGGAGTTCAATTATTTGTGGGTATTCCCAAAACGGGTCTGCATATGAAGCCCTCCAACTCTTTCATCAAATGAGATCAGAGTCATTCTCACCTGATGCATTCACATTGGTAAGTGTCCTCTCAGCTTGTGCTTCCCTCGGTTTTCTTCAGGTTGGTTCATCACTTCATGCTTACTCGATAAAGGATGGCATATTAACTTCAAACCTGTATGCTGGCACTGCACTTCTAAATTTATATGCCAAGTGTGGGGATGCTGAATCTGCTCGTCTAGTTTTTGATGGAATGAAAGAGAAGAACACTATAACGTGGAGTGCGATGATTGGTGGTTATGGAATCCAGGGTGACAGTAGAGGTTCCGTAGAACTTTTCAGTGATATGTTAAAGAAGCGTCTAGAGCCAAACGAAGTAATCTTCACAACCTTATTATCAGCTTGTAGCCATACAGGAATGGTTGCAGAAGGTCTGAAGTATTTCAATTCTCTATGCCAGGATTATAACTTTGTGCCTTCTATGAAGCACTATGCATGTATGGTTGATCTCTTGGCTCGTGCTGGTAAACTTGAAGAAGCCTTGGAATTTATTGAGAAAATGCCGGTTCGACCAGATGTTAATTTGTTTGGGGCTTTTCTCCACGGATGTGGACTCTATTCAAGGTTTGATCTTGGCGAAGTGGCGATAAGAAGATTGCTAGAGTTGCATCCTTATGAAGCTTGCTATTATGTGCTAATGTGTAATCTTTATGCTTCAGACGGTAGATGGAGCCAGGTTAATCAGGTGAGAGAATTGATGAAACAGAGGGGTTTGTGCAAGTCCCAAGCATATAGCCAAGTGCAAATGGATTTCAGAAATGGTCTCATACCTGTTAAAGGCGCAGGTGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

709

Amino Acids

79.35

Weight (kDa)

7.49

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	411 - 459	4.3e-10	PPR repeat family
PPR	PF01535	414 - 443	2.5e-06	PPR repeat
PPR_2	PF13041	513 - 561	4.1e-09	PPR repeat family
E_motif	PF20431	631 - 691	1.1e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03380
fragaria_vesca	FvH4_4g30510
malus_domestica	MD16G1065100.v1.1
prunus_persica	Prupe.1G281800_v2.0.a1
pyrus_communis	pycom13g05850 pycom16g05690
rosa_chinensis	RchiOBHm_Chr4g0438881
rosa_laevigata	RLG00000006322
rosa_multiflora	Rmu_co8498131.1_g000001 Rmu_sc0002505.1_g000022
rosa_roxburghii	Rroxscaffold_5G00379900
rosa_rugosa	Rorug04G0314000
rosa_samantha	Rh4AG364800 Rh4BG375900 Rh4CG390000 Rh4DG370600
rosa_wichuraiana	Rw0G007290 Rw0G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1740
AarI	CACCTGC	1 cut(s)	2108
AasI	GACNNNNNNGTC	1 cut(s)	875
AatII	GACGTC	1 cut(s)	860
Acc36I	ACCTGC	1 cut(s)	2108
AccB1I	GGYRCC	1 cut(s)	981
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	3 cut(s)	409, 885, 978
AcsI	RAATTY	3 cut(s)	1141, 1474, 1820
AcuI	CTGAAG	4 cut(s)	1019, 1376, 1730, 1974
AcyI	GRCGYC	1 cut(s)	857
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	5 cut(s)	222, 272, 365, 968, 1175
AfiI	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2111
AflIII	ACRYGT	2 cut(s)	273, 870
AgsI	TTSAA	9 cut(s)	53, 147, 160, 463, 1254, 1446, 1720, 1808, 1896
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	4 cut(s)	792, 1581, 1731, 2007
AleI	CACNNNNGTG	1 cut(s)	1881
AloI	GAACNNNNNNTCC	2 cut(s)	789, 821
AluBI	AGCT	7 cut(s)	7, 109, 210, 785, 1370, 1676, 1955
AluI	AGCT	7 cut(s)	7, 109, 210, 785, 1370, 1676, 1955
Alw21I	GWGCWC	1 cut(s)	1078
Alw26I	GTCTC	2 cut(s)	864, 2102
Alw44I	GTGCAC	1 cut(s)	1074
Aor13HI	TCCGGA	1 cut(s)	682
ApaLI	GTGCAC	1 cut(s)	1074
ApoI	RAATTY	3 cut(s)	1141, 1474, 1820
ArsI	GACNNNNNNTTYG	2 cut(s)	847, 879
Asp700I	GAANNNNTTC	1 cut(s)	1715
AspLEI	GCGC	1 cut(s)	2117
AspS9I	GGNCC	1 cut(s)	597
AsuC2I	CCSGG	2 cut(s)	301, 329
AsuHPI	GGTGA	6 cut(s)	490, 740, 865, 1326, 1598, 2032
AvaII	GGWCC	1 cut(s)	597
AxyI	CCTNAGG	1 cut(s)	194
BaeGI	GKGCMC	4 cut(s)	288, 301, 986, 1078
BanI	GGYRCC	1 cut(s)	981
BanII	GRGCYC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	1791
Bbv12I	GWGCWC	1 cut(s)	1078
BbvCI	CCTCAGC	1 cut(s)	356
BccI	CCATC	8 cut(s)	533, 608, 683, 718, 1014, 1424, 1517, 1995
BceAI	ACGGC	1 cut(s)	780
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	4 cut(s)	794, 1583, 1733, 2009
BcnI	CCSGG	2 cut(s)	301, 329
BcoDI	GTCTC	2 cut(s)	864, 2102
BfaI	CTAG	3 cut(s)	1514, 1637, 1934
BfuAI	ACCTGC	1 cut(s)	2108
Bme1390I	CCNGG	6 cut(s)	301, 329, 794, 1583, 1733, 2009
Bme18I	GGWCC	1 cut(s)	597
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	597
BmiI	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 2006
BmrFI	CCNGG	6 cut(s)	301, 329, 794, 1583, 1733, 2009
BmrI	ACTGGG	2 cut(s)	127, 564
BmsI	GCATC	7 cut(s)	342, 803, 889, 1189, 1330, 1486, 1951
BmuI	ACTGGG	2 cut(s)	127, 564
BplI	GAGNNNNNCTC	4 cut(s)	1144, 1176, 1316, 1348
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	2 cut(s)	105, 356
BpuEI	CTTGAG	1 cut(s)	99
BpuMI	CCSGG	2 cut(s)	301, 329
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	857
BsaI	GGTCTC	1 cut(s)	2102
BsaJI	CCNNGG	7 cut(s)	601, 793, 1111, 1381, 1582, 1815, 1876
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2111
Bse118I	RCCGGY	1 cut(s)	1837
Bse1I	ACTGG	3 cut(s)	133, 559, 739
Bse21I	CCTNAGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	960
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	4 cut(s)	794, 1583, 1733, 2009
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	7 cut(s)	601, 793, 1111, 1381, 1582, 1815, 1876
BseGI	GGATG	9 cut(s)	417, 490, 571, 717, 818, 1435, 1501, 1886, 1942
BseLI	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2111
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	3 cut(s)	96, 347, 1380
BseNI	ACTGG	3 cut(s)	133, 559, 739
BseRI	GAGGAG	2 cut(s)	401, 734
BseSI	GKGCMC	4 cut(s)	288, 301, 986, 1078
BseYI	CCCAGC	2 cut(s)	151, 748
BsgI	GTGCAG	2 cut(s)	689, 1449
Bsh1236I	CGCG	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	981
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	1078
BsiSI	CCGG	4 cut(s)	301, 329, 683, 1838
BslFI	GGGAC	3 cut(s)	583, 902, 2041
BslI	CCNNNNNNNGG	5 cut(s)	689, 991, 1278, 1491, 2111
BsmAI	GTCTC	2 cut(s)	864, 2102
BsmBI	CGTCTC	1 cut(s)	864
BsmFI	GGGAC	3 cut(s)	583, 902, 2041
BsmI	GAATGC	2 cut(s)	922, 1343
Bso31I	GGTCTC	1 cut(s)	2102
Bsp1286I	GDGCHC	5 cut(s)	288, 301, 536, 986, 1078
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
Bsp19I	CCATGG	1 cut(s)	1111
BspACI	CCGC	3 cut(s)	409, 885, 978
BspCNI	CTCAG	3 cut(s)	97, 348, 1379
BspDI	ATCGAT	1 cut(s)	186
BspEI	TCCGGA	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 2006
BspMI	ACCTGC	1 cut(s)	2108
BspT107I	GGYRCC	1 cut(s)	981
BspTNI	GGTCTC	1 cut(s)	2102
BsrDI	GCAATG	1 cut(s)	960
BsrFI	RCCGGY	1 cut(s)	1837
BsrI	ACTGG	3 cut(s)	133, 559, 739
BssAI	RCCGGY	1 cut(s)	1837
BssECI	CCNNGG	7 cut(s)	601, 793, 1111, 1381, 1582, 1815, 1876
BssMI	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
BssNI	GRCGYC	1 cut(s)	857
BssSI	CACGAG	1 cut(s)	1791
BssT1I	CCWWGG	2 cut(s)	1111, 1815
Bst2BI	CACGAG	1 cut(s)	1791
Bst2UI	CCWGG	4 cut(s)	794, 1583, 1733, 2009
Bst4CI	ACNGT	4 cut(s)	830, 1150, 1592, 1997
BstACI	GRCGYC	1 cut(s)	857
BstAPI	GCANNNNNTGC	1 cut(s)	2123
BstC8I	GCNNGC	3 cut(s)	769, 1459, 1957
BstDEI	CTNAG	5 cut(s)	105, 194, 356, 1366, 2127
BstDSI	CCRYGG	3 cut(s)	601, 1111, 1876
BstENI	CCTNNNNNAGG	1 cut(s)	2109
BstF5I	GGATG	9 cut(s)	417, 490, 571, 717, 818, 1435, 1501, 1886, 1942
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	2117
BstKTI	GATC	5 cut(s)	241, 937, 1322, 1783, 1906
BstMAI	GTCTC	2 cut(s)	864, 2102
BstMBI	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
BstMWI	GCNNNNNNNGC	6 cut(s)	1292, 1463, 1505, 1639, 1939, 2123
BstNI	CCWGG	4 cut(s)	794, 1583, 1733, 2009
BstNSI	RCATGY	2 cut(s)	874, 1773
BstSCI	CCNGG	6 cut(s)	299, 327, 792, 1581, 1731, 2007
BstSLI	GKGCMC	4 cut(s)	288, 301, 986, 1078
BstUI	CGCG	1 cut(s)	275
BstXI	CCANNNNNNTGG	2 cut(s)	1118, 1883
Bsu15I	ATCGAT	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	3 cut(s)	601, 1111, 1876
BtgZI	GCGATG	1 cut(s)	1574
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	9 cut(s)	417, 490, 571, 717, 818, 1435, 1501, 1886, 1942
BtsI	GCAGTG	2 cut(s)	1050, 1461
BtsIMutI	CAGTG	3 cut(s)	1050, 1461, 1621
BveI	ACCTGC	1 cut(s)	2108
Cac8I	GCNNGC	3 cut(s)	769, 1459, 1957
CfoI	GCGC	1 cut(s)	2117
Cfr10I	RCCGGY	1 cut(s)	1837
Cfr13I	GGNCC	1 cut(s)	597
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	264, 1622
Csp6I	GTAC	5 cut(s)	221, 271, 364, 967, 1174
CviQI	GTAC	5 cut(s)	221, 271, 364, 967, 1174
DdeI	CTNAG	5 cut(s)	105, 194, 356, 1366, 2127
DpnI	GATC	5 cut(s)	240, 936, 1321, 1782, 1905
DpnII	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
DraIII	CACNNNGTG	1 cut(s)	379
DrdI	GACNNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	875
EciI	GGCGGA	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	1111, 1815
Eco24I	GRGCYC	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	2102
Eco47I	GGWCC	1 cut(s)	597
Eco57I	CTGAAG	4 cut(s)	1019, 1376, 1730, 1974
Eco81I	CCTNAGG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	2109
EcoRII	CCWGG	4 cut(s)	792, 1581, 1731, 2007
EcoT14I	CCWWGG	2 cut(s)	1111, 1815
EcoT22I	ATGCAT	2 cut(s)	1345, 1771
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	2 cut(s)	1111, 1815
Esp3I	CGTCTC	1 cut(s)	864
FaqI	GGGAC	3 cut(s)	583, 902, 2041
FauI	CCCGC	2 cut(s)	878, 971
FauNDI	CATATG	2 cut(s)	1188, 1288
FokI	GGATG	9 cut(s)	424, 497, 578, 724, 825, 1442, 1508, 1893, 1929
FriOI	GRGCYC	1 cut(s)	536
FspBI	CTAG	3 cut(s)	1514, 1637, 1934
GlaI	GCGC	1 cut(s)	2116
GsaI	CCCAGC	2 cut(s)	155, 752
GsuI	CTGGAG	1 cut(s)	78
HapII	CCGG	4 cut(s)	301, 329, 683, 1838
HgaI	GACGC	2 cut(s)	264, 1622
HhaI	GCGC	1 cut(s)	2117
Hin1I	GRCGYC	1 cut(s)	857
Hin6I	GCGC	1 cut(s)	2115
HinP1I	GCGC	1 cut(s)	2115
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	1953
HinfI	GANTC	5 cut(s)	188, 1325, 1502, 1578, 1887
HpaII	CCGG	4 cut(s)	301, 329, 683, 1838
HphI	GGTGA	6 cut(s)	490, 740, 865, 1326, 1598, 2032
Hpy166II	GTNNAC	7 cut(s)	552, 744, 969, 1008, 1076, 1802, 1886
Hpy188I	TCNGA	6 cut(s)	896, 999, 1324, 1710, 1993, 2090
Hpy188III	TCNNGA	3 cut(s)	95, 683, 1637
Hpy8I	GTNNAC	7 cut(s)	552, 744, 969, 1008, 1076, 1802, 1886
Hpy99I	CGWCG	2 cut(s)	317, 346
HpyAV	CCTTC	8 cut(s)	166, 457, 488, 496, 725, 1095, 1697, 1761
HpyCH4III	ACNGT	4 cut(s)	830, 1150, 1592, 1997
HpyCH4IV	ACGT	3 cut(s)	288, 857, 1550
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1292, 1463, 1505, 1639, 1939, 2123
HpyF3I	CTNAG	5 cut(s)	105, 194, 356, 1366, 2127
HpySE526I	ACGT	3 cut(s)	288, 857, 1550
Hsp92I	GRCGYC	1 cut(s)	857
HspAI	GCGC	1 cut(s)	2115
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
LmnI	GCTCC	2 cut(s)	531, 2004
LweI	GCATC	7 cut(s)	342, 803, 889, 1189, 1330, 1486, 1951
MaeI	CTAG	3 cut(s)	1514, 1637, 1934
MaeII	ACGT	3 cut(s)	288, 857, 1550
MaeIII	GTNAC	4 cut(s)	248, 434, 853, 1586
MalI	GATC	5 cut(s)	240, 936, 1321, 1782, 1905
MboI	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
MboII	GAAGA	7 cut(s)	155, 698, 1382, 1549, 1648, 1820, 1938
MfeI	CAATTG	1 cut(s)	292
MhlI	GDGCHC	5 cut(s)	288, 301, 536, 986, 1078
MluI	ACGCGT	1 cut(s)	273
MlyI	GAGTC	2 cut(s)	1334, 1881
MmeI	TCCRAC	4 cut(s)	623, 969, 1116, 1324
Mph1103I	ATGCAT	2 cut(s)	1345, 1771
MroI	TCCGGA	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	1715
MslI	CAYNNNNRTG	2 cut(s)	1881, 1947
MspI	CCGG	4 cut(s)	301, 329, 683, 1838
MspR9I	CCNGG	6 cut(s)	301, 329, 794, 1583, 1733, 2009
MunI	CAATTG	1 cut(s)	292
Mva1269I	GAATGC	2 cut(s)	922, 1343
MvaI	CCWGG	4 cut(s)	794, 1583, 1733, 2009
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	6 cut(s)	1292, 1463, 1505, 1639, 1939, 2123
NciI	CCSGG	2 cut(s)	301, 329
NcoI	CCATGG	1 cut(s)	1111
NdeI	CATATG	2 cut(s)	1188, 1288
NdeII	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
NlaIV	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 2006
NmuCI	GTSAC	4 cut(s)	248, 434, 853, 1586
NsiI	ATGCAT	2 cut(s)	1345, 1771
NspI	RCATGY	2 cut(s)	874, 1773
OliI	CACNNNNGTG	1 cut(s)	1881
PaqCI	CACCTGC	1 cut(s)	2108
PciI	ACATGT	1 cut(s)	870
PcsI	WCGNNNNNNNCGW	1 cut(s)	1556
PctI	GAATGC	2 cut(s)	922, 1343
PdmI	GAANNNNTTC	1 cut(s)	1715
PfeI	GAWTC	3 cut(s)	188, 1502, 1578
PleI	GAGTC	2 cut(s)	1333, 1881
PpsI	GAGTC	2 cut(s)	1333, 1881
PscI	ACATGT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	1740
Psp6I	CCWGG	4 cut(s)	792, 1581, 1731, 2007
PspFI	CCCAGC	2 cut(s)	151, 748
PspGI	CCWGG	4 cut(s)	792, 1581, 1731, 2007
PspN4I	GGNNCC	6 cut(s)	533, 599, 737, 983, 1600, 2006
PspPI	GGNCC	1 cut(s)	597
RsaI	GTAC	5 cut(s)	222, 272, 365, 968, 1175
RsaNI	GTAC	5 cut(s)	221, 271, 364, 967, 1174
RseI	CAYNNNNRTG	2 cut(s)	1881, 1947
Sau3AI	GATC	5 cut(s)	238, 934, 1319, 1780, 1903
Sau96I	GGNCC	1 cut(s)	597
SchI	GAGTC	2 cut(s)	1334, 1881
ScrFI	CCNGG	6 cut(s)	301, 329, 794, 1583, 1733, 2009
SduI	GDGCHC	5 cut(s)	288, 301, 536, 986, 1078
SfaNI	GCATC	7 cut(s)	342, 803, 889, 1189, 1330, 1486, 1951
SinI	GGWCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	2 cut(s)	1881, 1947
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SsiI	CCGC	3 cut(s)	409, 885, 978
SspMI	CTAG	3 cut(s)	1514, 1637, 1934
StyD4I	CCNGG	6 cut(s)	299, 327, 792, 1581, 1731, 2007
StyI	CCWWGG	2 cut(s)	1111, 1815
TaaI	ACNGT	4 cut(s)	830, 1150, 1592, 1997
TaiI	ACGT	3 cut(s)	291, 860, 1553
TaqI	TCGA	9 cut(s)	186, 233, 312, 344, 452, 650, 1204, 1421, 1843
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	188, 1502, 1578
TscAI	CASTG	3 cut(s)	1057, 1468, 1621
TseFI	GTSAC	4 cut(s)	248, 434, 853, 1586
Tsp45I	GTSAC	4 cut(s)	248, 434, 853, 1586
TspGWI	ACGGA	3 cut(s)	1025, 1591, 1893
TspRI	CASTG	3 cut(s)	1057, 1468, 1621
VneI	GTGCAC	1 cut(s)	1074
VpaK11BI	GGWCC	1 cut(s)	597
XagI	CCTNNNNNAGG	1 cut(s)	2109
XapI	RAATTY	3 cut(s)	1141, 1474, 1820
XbaI	TCTAGA	1 cut(s)	1636
XceI	RCATGY	2 cut(s)	874, 1773
XmnI	GAANNNNTTC	1 cut(s)	1715
XspI	CTAG	3 cut(s)	1514, 1637, 1934
ZraI	GACGTC	1 cut(s)	858
Zsp2I	ATGCAT	2 cut(s)	1345, 1771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.