Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004423

Physical Location & Seq

Genomic Coordinates Reverse (-)

6195303 .. 6206225

Gene Structure 10923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1089500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2628 bp

ATGAATCCCTTCTCGTCCGGAACACGCCTGAGGGACATGATTCGGGCTATACGTGCTTGCAAAACTGCGGCAGAGGAACGTGCTGTTGTAAGAAAAGAATGTGCTGCAATCCGTGCAGCTATAAACGAAAATGATCATGACTACAGGCATCGTAACCTTGCTAAGCTCATGTTTATCCACATGTTGGGTTATCCCACCCATTTTGGTCAAATGGAGTGCCTGAAGTTGATTGCATCTGCTGGTTTTCCTGAGAAGAGAATAGGGTATCTTGGCCTCATGCTGCTTCTTGATGAAAGACAAGAAGTTCTGATGTTGGTCACAAACTCATTGAAACAAGATCTCAATCACACAAACCAATATATTGTGGGACTTGCTCTTTGTGCTCTGGGAAATATTTGTTCAGCCGAAATGGCTCGTGATCTTGCACCAGAAGTGGAAAGGTTGTTGCAATTTCGAGATCCAAATATCCGGAAAAAGGCAGCATTGTGCTCTATAAGGATTATAAGGAAAGTCCCTGAGCTGGCGGAAAATTTCATTAATCCTGCTGCCACCTTACTTAAAGAAAAGCATCATGGCGTTTTAATAACAGGGGTTCAACTTTGTACAGATCTTTGTAAAGTCAGTGAAGAAGCCCTTGAATATTTCAGAAAGAAATGTACCGAGGGATTGGTCAAAACACTAAAGGACGTAGTGAATAGTCCATATGCCCCTGAGTATGACATTGCTGGGATCACGGATCCTTTCCTACACATTAGATTGCTAAAGCTTTTACGTGTGTTGGGCCAAGGAGATGCAGATGCTAGTGAATGCATGAATGACATACTTGCCCAGGTGGCGACAAAAACCGAGTCAAACAAAAATGCAGGAAATGCAATCCTATATGAATGTGTTGAAACTATCATGAGCATTGAAGATAGTGGTGGCTTACGTGTGCTTGCCATCAATATCTTGGGAAGATTCTTATCAAATCGTGACAACAATATCAGATATGTTGCATTAAATATGCTGATGAAGGCTATTACAGTTGATGCTCAAGCTGTGCAGAGGCATCGGGCAACTATCTTGGAATGTGTAAAGGATTCAGATGCCTCAATTCGGAAAAGGGCCCTTGAGCTTGTTTATGTGCTTGTGAATGAGAGCAATGTGAAGCCTCTAACAAAAGAGCTAATTGACTATTTGGAAGTAAGTGATCAAGAATTCAAGGGAGATCTTACTGCAAAAATTTGCTCCATTGTTACAAAGTTTTCCCCCGAGAAGATTTGGTACATTGACCAGATGCTAAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCACGCGCTTATTGTTGTGATTAGCAATGCTTCTGATCTCCATGGATATACAGTTAGGGCGTTATACCGAGCATTCCAATTATCAGCTGAACAGGAAAGTCTTGTTCGAGTAGCAATTTGGTGCATTGGAGAATATGGTGACATGTTGGTTAACAATGTTGGCATGCTCGATATAGAGGACCCAATGACAGTAACAGAGTCTGACGCTGTGGATATTATAGAGGTTGCAATTAAGCACCATACCTCGGATCTGACTACCAAAGCAATGGGTTTAATTGCTCTGTTGAAGCTATCTTCACGTTTCCCATCTTGTTCAGAGAGGATCAAGGATATAGTTGTTCAATACAAAGGAAGCCTTGTCCTCGAATTGCAGCAAAGATCCCTTGAATTGAACTCTATTATTGCGAAGCATCAGAACATTAGATCTACACTGGTTGAACGGATGCCAGTTTTGGATGAGGCAACTTTCATTGGAAAGAAGGCTGGTTCAATGCAATCTACTGTTTCTTCTCCTTCTGGTGCTTCAATCAATCTACCAAATGGAGTTGCCAAACCTTCTGCAGCTCCTCTTGTGGATCTACTTGATCTAGGTTCGGATGATGTGCCAGCCCCTAGCTCCTCTGGTGGTGATTTGCTTCATGATCTTCTTGGTGTTGATTTGGCACCAGCTTCGAAACAATCTGGTGTAAATCATTCTCCAAATAATGGCACCGATGTTCTACTGGATCTCTTGTCTATTGGTTCGCCTACGCCAAGCAGCTCATCTCTACCAGATATGTTATCTTCCAGTGAAGGAAACAAAACACCTGTTTCGCCATTAGGACTGACATTTCCATCTTCAAATTCAACACAAGCCACTTCTTCTGTGGGAGCTGCCCCTGTGATTGATTTGTTGGACGGCTTTGCTGCCAGCACCCCAAAACATGAAAACAATGGCACAGCTTATCCATCTGTAGTGGCATTTGAGAGCAGCAACTTGAAGATGGTTTTCAACTTCTCAAAGCAGCCTGGAAATCCACAAACAACAGTGATCGAGGCTACATTCACGAATTTGTCCACTAATGTCTATACAGATTTTATTTTTCAGGCAGCTGTTCCAAAGTTTCTTCAATTGCACTTAGAACCAGCAAGTGGCAATACTCTGCCCGCAAGTGATAATGGGTCCATCACACAAACTTTGAGAGTTACCAACAGCCAACATGGAAAGAAATCGCTTGTCATGCGCATACGGATAGCTTACAAGATGAACAACAAAGATGTCTTGGAGGAAGGTCAAATCAACAAATTTCCTCCCGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0008150 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030119 GO:0030120 GO:0030121 GO:0030125 GO:0030130 GO:0030131 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N Alpha_adaptinC2

Protein Analysis

876

Amino Acids

95.76

Weight (kDa)

6.07

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	26 - 579	2.8e-151	Adaptin N terminal region
Alpha_adaptinC2	PF02883	759 - 872	3.7e-32	Adaptin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23900 AT1G23900 AT1G23900 AT1G60070 AT1G60070
fragaria_vesca	FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830
malus_domestica	MD13G1089300.v1.1 MD16G1089500.v1.1
prunus_persica	Prupe.1G256500_v2.0.a1
pyrus_communis	pycom13g07770 pycom16g07660
rosa_chinensis	RchiOBHm_Chr4g0444171
rosa_laevigata	RLG00000005850
rosa_multiflora	Rmu_sc0034408.1_g000001 Rmu_ssc0000462.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384760
rosa_rugosa	Rorug04G0350700 Rorug04G0350700
rosa_samantha	Rh4AG411400 Rh4BG422800 Rh4CG154500 Rh4CG437100 Rh4DG418100
rosa_wichuraiana	Rw4G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
Acc16I	TGCGCA	1 cut(s)	2549
AccB1I	GGYRCC	2 cut(s)	1987, 2033
AccB7I	CCANNNNNTGG	3 cut(s)	184, 2030, 2456
AccII	CGCG	1 cut(s)	1331
AccIII	TCCGGA	2 cut(s)	17, 468
AciI	CCGC	3 cut(s)	68, 524, 2472
AclWI	GGATC	9 cut(s)	452, 731, 737, 744, 1581, 1655, 1698, 1908, 2058
AcsI	RAATTY	7 cut(s)	529, 1196, 1221, 1303, 2167, 2374, 2609
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	3 cut(s)	604, 658, 1265
AfiI	CCNNNNNNNGG	7 cut(s)	184, 475, 520, 1095, 1570, 2030, 2456
AflIII	ACRYGT	4 cut(s)	180, 772, 928, 1467
AjnI	CCWGG	2 cut(s)	828, 2332
Alw21I	GWGCWC	2 cut(s)	385, 491
AlwI	GGATC	9 cut(s)	452, 731, 737, 744, 1581, 1655, 1698, 1908, 2058
AlwNI	CAGNNNCTG	1 cut(s)	1526
Ama87I	CYCGRG	1 cut(s)	1250
Aor13HI	TCCGGA	2 cut(s)	17, 468
AoxI	GGCC	3 cut(s)	271, 781, 1104
ApaI	GGGCCC	1 cut(s)	1108
ApoI	RAATTY	7 cut(s)	529, 1196, 1221, 1303, 2167, 2374, 2609
ArsI	GACNNNNNNTTYG	4 cut(s)	360, 392, 833, 865
AseI	ATTAAT	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	1333, 2550
AspS9I	GGNCC	5 cut(s)	781, 1104, 1105, 1504, 2487
AsuC2I	CCSGG	1 cut(s)	2619
AsuHPI	GGTGA	2 cut(s)	1475, 1964
AsuII	TTCGAA	1 cut(s)	1997
AvaI	CYCGRG	1 cut(s)	1250
AvaII	GGWCC	2 cut(s)	1504, 2487
AxyI	CCTNAGG	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	1108
BamHI	GGATCC	1 cut(s)	736
BanI	GGYRCC	2 cut(s)	1987, 2033
BanII	GRGCYC	1 cut(s)	1108
BarI	GAAGNNNNNNTAC	2 cut(s)	1247, 1279
BauI	CACGAG	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	385, 491
BccI	CCATC	6 cut(s)	947, 1639, 2167, 2281, 2302, 2498
BceAI	ACGGC	1 cut(s)	2239
BcgI	CGANNNNNNTGC	4 cut(s)	1031, 1065, 1977, 2011
BciT130I	CCWGG	2 cut(s)	830, 2334
BclI	TGATCA	2 cut(s)	133, 1189
BcnI	CCSGG	1 cut(s)	2619
BfaI	CTAG	3 cut(s)	801, 1913, 1938
BfmI	CTRYAG	3 cut(s)	142, 1884, 2277
BglI	GCCNNNNNGGC	2 cut(s)	410, 833
BglII	AGATCT	4 cut(s)	337, 607, 1207, 1748
BlpI	GCTNAGC	1 cut(s)	162
Bme1390I	CCNGG	3 cut(s)	830, 2334, 2619
Bme18I	GGWCC	2 cut(s)	1504, 2487
BmeT110I	CYCGRG	1 cut(s)	1250
BmgT120I	GGNCC	5 cut(s)	781, 1104, 1105, 1504, 2487
BmiI	GGNNCC	6 cut(s)	738, 1106, 1506, 1989, 2035, 2488
BmrFI	CCNGG	3 cut(s)	830, 2334, 2619
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	1997
BpuEI	CTTGAG	2 cut(s)	1017, 1130
BpuMI	CCSGG	1 cut(s)	2619
BsaAI	YACGTR	3 cut(s)	53, 773, 929
BsaBI	GATNNNNATC	2 cut(s)	342, 961
BsaJI	CCNNGG	5 cut(s)	660, 784, 828, 1366, 1569
BsaWI	WCCGGW	2 cut(s)	17, 468
Bsc4I	CCNNNNNNNGG	7 cut(s)	184, 475, 520, 1095, 1570, 2030, 2456
Bse1I	ACTGG	4 cut(s)	1761, 1772, 2052, 2112
Bse21I	CCTNAGG	1 cut(s)	29
Bse3DI	GCAATG	4 cut(s)	720, 1147, 1357, 1596
Bse8I	GATNNNNATC	2 cut(s)	342, 961
BseAI	TCCGGA	2 cut(s)	17, 468
BseBI	CCWGG	2 cut(s)	830, 2334
BseDI	CCNNGG	5 cut(s)	660, 784, 828, 1366, 1569
BseGI	GGATG	3 cut(s)	1773, 1786, 1927
BseJI	GATNNNNATC	2 cut(s)	342, 961
BseLI	CCNNNNNNNGG	7 cut(s)	184, 475, 520, 1095, 1570, 2030, 2456
BseMI	GCAATG	4 cut(s)	720, 1147, 1357, 1596
BseMII	CTCAG	5 cut(s)	20, 240, 507, 702, 1284
BseNI	ACTGG	4 cut(s)	1761, 1772, 2052, 2112
BseRI	GAGGAG	2 cut(s)	1881, 1933
BseSI	GKGCMC	1 cut(s)	1108
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	2 cut(s)	135, 1061
Bsh1236I	CGCG	1 cut(s)	1331
BshFI	GGCC	3 cut(s)	273, 783, 1106
BshNI	GGYRCC	2 cut(s)	1987, 2033
BsiHKAI	GWGCWC	2 cut(s)	385, 491
BsiHKCI	CYCGRG	1 cut(s)	1250
BsiSI	CCGG	3 cut(s)	18, 469, 2619
BslFI	GGGAC	3 cut(s)	47, 381, 497
BslI	CCNNNNNNNGG	7 cut(s)	184, 475, 520, 1095, 1570, 2030, 2456
BsmFI	GGGAC	3 cut(s)	47, 381, 497
BsmI	GAATGC	2 cut(s)	812, 1397
BsnI	GGCC	3 cut(s)	273, 783, 1106
BsoBI	CYCGRG	1 cut(s)	1250
Bsp119I	TTCGAA	1 cut(s)	1997
Bsp120I	GGGCCC	1 cut(s)	1104
Bsp1286I	GDGCHC	3 cut(s)	385, 491, 1108
Bsp13I	TCCGGA	2 cut(s)	17, 468
Bsp1407I	TGTACA	1 cut(s)	602
Bsp1720I	GCTNAGC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	1366
BspACI	CCGC	3 cut(s)	68, 524, 2472
BspANI	GGCC	3 cut(s)	273, 783, 1106
BspCNI	CTCAG	5 cut(s)	21, 241, 508, 703, 1285
BspEI	TCCGGA	2 cut(s)	17, 468
BspFNI	CGCG	1 cut(s)	1331
BspHI	TCATGA	3 cut(s)	136, 900, 1963
BspLI	GGNNCC	6 cut(s)	738, 1106, 1506, 1989, 2035, 2488
BspMAI	CTGCAG	1 cut(s)	1888
BspPI	GGATC	9 cut(s)	452, 731, 737, 744, 1581, 1655, 1698, 1908, 2058
BspT104I	TTCGAA	1 cut(s)	1997
BspT107I	GGYRCC	2 cut(s)	1987, 2033
BsrDI	GCAATG	4 cut(s)	720, 1147, 1357, 1596
BsrGI	TGTACA	1 cut(s)	602
BsrI	ACTGG	4 cut(s)	1761, 1772, 2052, 2112
BssECI	CCNNGG	5 cut(s)	660, 784, 828, 1366, 1569
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	784, 1366
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	830, 2334
Bst4CI	ACNGT	5 cut(s)	1024, 1378, 1516, 1828, 2353
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	2 cut(s)	113, 869
BstAUI	TGTACA	1 cut(s)	602
BstBAI	YACGTR	3 cut(s)	53, 773, 929
BstBI	TTCGAA	1 cut(s)	1997
BstC8I	GCNNGC	8 cut(s)	58, 522, 936, 1329, 1490, 1932, 2236, 2472
BstDEI	CTNAG	7 cut(s)	29, 162, 249, 516, 711, 1293, 2443
BstDSI	CCRYGG	1 cut(s)	1366
BstF5I	GGATG	3 cut(s)	1773, 1786, 1927
BstFNI	CGCG	1 cut(s)	1331
BstHHI	GCGC	2 cut(s)	1333, 2550
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 113, 380, 410, 833, 869, 2545
BstNI	CCWGG	2 cut(s)	830, 2334
BstNSI	RCATGY	3 cut(s)	184, 1471, 1492
BstSCI	CCNGG	3 cut(s)	828, 2332, 2617
BstSFI	CTRYAG	3 cut(s)	142, 1884, 2277
BstSLI	GKGCMC	1 cut(s)	1108
BstUI	CGCG	1 cut(s)	1331
BstXI	CCANNNNNNTGG	1 cut(s)	1591
Bsu36I	CCTNAGG	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	273, 783, 1106
BtgI	CCRYGG	1 cut(s)	1366
BtsCI	GGATG	3 cut(s)	1773, 1786, 1927
BtsIMutI	CAGTG	4 cut(s)	628, 1754, 2119, 2358
Cac8I	GCNNGC	8 cut(s)	58, 522, 936, 1329, 1490, 1932, 2236, 2472
CaiI	CAGNNNCTG	1 cut(s)	1526
CciI	TCATGA	3 cut(s)	136, 900, 1963
CfoI	GCGC	2 cut(s)	1333, 2550
Cfr13I	GGNCC	5 cut(s)	781, 1104, 1105, 1504, 2487
CseI	GACGC	1 cut(s)	1538
Csp6I	GTAC	3 cut(s)	603, 657, 1264
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviQI	GTAC	3 cut(s)	603, 657, 1264
DdeI	CTNAG	7 cut(s)	29, 162, 249, 516, 711, 1293, 2443
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	539
Eco130I	CCWWGG	2 cut(s)	784, 1366
Eco24I	GRGCYC	1 cut(s)	1108
Eco47I	GGWCC	2 cut(s)	1504, 2487
Eco57I	CTGAAG	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	1250
EcoO109I	RGGNCCY	3 cut(s)	1104, 1105, 1504
EcoRI	GAATTC	1 cut(s)	1196
EcoRII	CCWGG	2 cut(s)	828, 2332
EcoT14I	CCWWGG	2 cut(s)	784, 1366
EcoT22I	ATGCAT	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	1108
ErhI	CCWWGG	2 cut(s)	784, 1366
FalI	AAGNNNNNCTT	4 cut(s)	618, 650, 1665, 1697
FaqI	GGGAC	3 cut(s)	47, 381, 497
FauI	CCCGC	1 cut(s)	2479
FauNDI	CATATG	1 cut(s)	703
FbaI	TGATCA	2 cut(s)	133, 1189
FokI	GGATG	3 cut(s)	1780, 1793, 1934
FriOI	GRGCYC	1 cut(s)	1108
FspAI	RTGCGCAY	1 cut(s)	2549
FspBI	CTAG	3 cut(s)	801, 1913, 1938
FspI	TGCGCA	1 cut(s)	2549
GlaI	GCGC	2 cut(s)	1332, 2549
GsaI	CCCAGC	1 cut(s)	729
HaeIII	GGCC	3 cut(s)	273, 783, 1106
HapII	CCGG	3 cut(s)	18, 469, 2619
HgaI	GACGC	1 cut(s)	1538
HhaI	GCGC	2 cut(s)	1333, 2550
Hin6I	GCGC	2 cut(s)	1331, 2548
HinP1I	GCGC	2 cut(s)	1331, 2548
HincII	GTYRAC	1 cut(s)	1477
HindII	GTYRAC	1 cut(s)	1477
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	6 cut(s)	4, 40, 848, 957, 1079, 1523
HpaI	GTTAAC	1 cut(s)	1477
HpaII	CCGG	3 cut(s)	18, 469, 2619
HphI	GGTGA	2 cut(s)	1475, 1964
Hpy166II	GTNNAC	2 cut(s)	1477, 2382
Hpy8I	GTNNAC	2 cut(s)	1477, 2382
HpyAV	CCTTC	7 cut(s)	19, 1006, 1798, 1848, 1890, 2111, 2588
HpyCH4III	ACNGT	5 cut(s)	1024, 1378, 1516, 1828, 2353
HpyCH4IV	ACGT	6 cut(s)	52, 79, 687, 772, 928, 1624
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 113, 380, 410, 833, 869, 2545
HpyF3I	CTNAG	7 cut(s)	29, 162, 249, 516, 711, 1293, 2443
HpySE526I	ACGT	6 cut(s)	52, 79, 687, 772, 928, 1624
HspAI	GCGC	2 cut(s)	1331, 2548
Kpn2I	TCCGGA	2 cut(s)	17, 468
Ksp22I	TGATCA	2 cut(s)	133, 1189
KspAI	GTTAAC	1 cut(s)	1477
LmnI	GCTCC	4 cut(s)	1232, 1894, 1946, 2195
MaeI	CTAG	3 cut(s)	801, 1913, 1938
MaeII	ACGT	6 cut(s)	52, 79, 687, 772, 928, 1624
MaeIII	GTNAC	7 cut(s)	152, 316, 971, 1234, 1463, 1516, 2509
MfeI	CAATTG	1 cut(s)	2435
MhlI	GDGCHC	3 cut(s)	385, 491, 1108
MlyI	GAGTC	2 cut(s)	857, 1532
MmeI	TCCRAC	1 cut(s)	2199
Mph1103I	ATGCAT	1 cut(s)	812
MroI	TCCGGA	2 cut(s)	17, 468
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	7 cut(s)	537, 558, 581, 998, 1476, 1557, 1598
MspA1I	CMGCKG	2 cut(s)	1412, 2417
MspI	CCGG	3 cut(s)	18, 469, 2619
MspR9I	CCNGG	3 cut(s)	830, 2334, 2619
MunI	CAATTG	1 cut(s)	2435
Mva1269I	GAATGC	2 cut(s)	812, 1397
MvaI	CCWGG	2 cut(s)	830, 2334
MvnI	CGCG	1 cut(s)	1331
MwoI	GCNNNNNNNGC	7 cut(s)	53, 113, 380, 410, 833, 869, 2545
NciI	CCSGG	1 cut(s)	2619
NcoI	CCATGG	1 cut(s)	1366
NdeI	CATATG	1 cut(s)	703
NlaIV	GGNNCC	6 cut(s)	738, 1106, 1506, 1989, 2035, 2488
NmuCI	GTSAC	3 cut(s)	316, 971, 1463
NsbI	TGCGCA	1 cut(s)	2549
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	3 cut(s)	184, 1471, 1492
NspV	TTCGAA	1 cut(s)	1997
PaeI	GCATGC	1 cut(s)	1492
PagI	TCATGA	3 cut(s)	136, 900, 1963
PciI	ACATGT	2 cut(s)	180, 1467
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	2 cut(s)	812, 1397
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	4 cut(s)	4, 40, 957, 1079
PflMI	CCANNNNNTGG	3 cut(s)	184, 2030, 2456
PleI	GAGTC	2 cut(s)	856, 1531
PpsI	GAGTC	2 cut(s)	856, 1531
Ppu21I	YACGTR	3 cut(s)	53, 773, 929
PpuMI	RGGWCCY	1 cut(s)	1504
PscI	ACATGT	2 cut(s)	180, 1467
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	1504
Psp6I	CCWGG	2 cut(s)	828, 2332
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	828, 2332
PspN4I	GGNNCC	6 cut(s)	738, 1106, 1506, 1989, 2035, 2488
PspOMI	GGGCCC	1 cut(s)	1104
PspPI	GGNCC	5 cut(s)	781, 1104, 1105, 1504, 2487
PspPPI	RGGWCCY	1 cut(s)	1504
PstI	CTGCAG	1 cut(s)	1888
PstNI	CAGNNNCTG	1 cut(s)	1526
PvuII	CAGCTG	2 cut(s)	1412, 2417
RsaI	GTAC	3 cut(s)	604, 658, 1265
RsaNI	GTAC	3 cut(s)	603, 657, 1264
SaqAI	TTAA	7 cut(s)	537, 558, 581, 998, 1476, 1557, 1598
Sau96I	GGNCC	5 cut(s)	781, 1104, 1105, 1504, 2487
SchI	GAGTC	2 cut(s)	857, 1532
ScrFI	CCNGG	3 cut(s)	830, 2334, 2619
SduI	GDGCHC	3 cut(s)	385, 491, 1108
SfcI	CTRYAG	3 cut(s)	142, 1884, 2277
SfuI	TTCGAA	1 cut(s)	1997
SinI	GGWCC	2 cut(s)	1504, 2487
SmlI	CTYRAG	2 cut(s)	1032, 1109
SmoI	CTYRAG	2 cut(s)	1032, 1109
SphI	GCATGC	1 cut(s)	1492
SsiI	CCGC	3 cut(s)	68, 524, 2472
SspI	AATATT	2 cut(s)	394, 641
SspMI	CTAG	3 cut(s)	801, 1913, 1938
StyD4I	CCNGG	3 cut(s)	828, 2332, 2617
StyI	CCWWGG	2 cut(s)	784, 1366
TaaI	ACNGT	5 cut(s)	1024, 1378, 1516, 1828, 2353
TaiI	ACGT	6 cut(s)	55, 82, 690, 775, 931, 1627
TaqI	TCGA	6 cut(s)	454, 1432, 1494, 1689, 1997, 2358
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	4 cut(s)	4, 40, 957, 1079
Tru1I	TTAA	7 cut(s)	537, 558, 581, 998, 1476, 1557, 1598
Tru9I	TTAA	7 cut(s)	537, 558, 581, 998, 1476, 1557, 1598
TscAI	CASTG	4 cut(s)	628, 1761, 2119, 2358
TseFI	GTSAC	3 cut(s)	316, 971, 1463
Tsp45I	GTSAC	3 cut(s)	316, 971, 1463
TspGWI	ACGGA	4 cut(s)	101, 749, 1780, 2569
TspRI	CASTG	4 cut(s)	628, 1761, 2119, 2358
Van91I	CCANNNNNTGG	3 cut(s)	184, 2030, 2456
VpaK11BI	GGWCC	2 cut(s)	1504, 2487
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	7 cut(s)	529, 1196, 1221, 1303, 2167, 2374, 2609
XceI	RCATGY	3 cut(s)	184, 1471, 1492
XcmI	CCANNNNNNNNNTGG	2 cut(s)	946, 2188
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	801, 1913, 1938
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.