Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034408.1

Orthogroup ID

OG0004423

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 818

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034408.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ttcctgcaactgcacttagagccagctagcggcaatactcttccggcaagtggtaatgagtccatcacacagactttgagagttaccaatagccaacatggaaagaaaagtcttgtcatgcgcataaggatagcttacaagatgaacaacaaagatgtcttggaggaaggacaaatcaacaattttccccagggtttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0008150 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030119 GO:0030120 GO:0030121 GO:0030125 GO:0030130 GO:0030131 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N Alpha_adaptinC2

Protein Analysis

66

Amino Acids

7.35

Weight (kDa)

9.4

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23900 AT1G23900 AT1G23900 AT1G60070 AT1G60070
fragaria_vesca	FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830
malus_domestica	MD13G1089300.v1.1 MD16G1089500.v1.1
prunus_persica	Prupe.1G256500_v2.0.a1
pyrus_communis	pycom13g07770 pycom16g07660
rosa_chinensis	RchiOBHm_Chr4g0444171
rosa_laevigata	RLG00000005850
rosa_multiflora	Rmu_sc0034408.1_g000001 Rmu_ssc0000462.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384760
rosa_rugosa	Rorug04G0350700 Rorug04G0350700
rosa_samantha	Rh4AG411400 Rh4BG422800 Rh4CG154500 Rh4CG437100 Rh4DG418100
rosa_wichuraiana	Rw4G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	122
AciI	CCGC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	29, 50
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	26, 134
AluI	AGCT	2 cut(s)	26, 134
AspLEI	GCGC	1 cut(s)	123
AsuNHI	GCTAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BmtI	GCTAGC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	189, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 50
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	189, 190
BseLI	CCNNNNNNNGG	2 cut(s)	29, 50
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	29, 50
BspACI	CCGC	1 cut(s)	30
BspOI	GCTAGC	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	189, 190
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	24, 28
BstDEI	CTNAG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	24, 28
CfoI	GCGC	1 cut(s)	123
CviAII	CATG	2 cut(s)	98, 118
CviJI	RGCY	4 cut(s)	22, 26, 93, 134
CviKI_1	RGCY	4 cut(s)	22, 26, 93, 134
DdeI	CTNAG	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	101, 121
FaiI	YATR	4 cut(s)	99, 119, 125, 199
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	2 cut(s)	97, 117
Fnu4HI	GCNGC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	31
FspAI	RTGCGCAY	1 cut(s)	122
FspBI	CTAG	1 cut(s)	27
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	31
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	101, 121
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	7, 13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	101, 121
HspAI	GCGC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	17, 36, 57, 176
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	32
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	1 cut(s)	157
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	19
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	101, 121
NsbI	TGCGCA	1 cut(s)	122
PasI	CCCWGGG	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
SatI	GCNGC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	2 cut(s)	28, 136
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	189
TasI	AATT	1 cut(s)	181
TauI	GCSGC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	158
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.