Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004423

Physical Location & Seq

Genomic Coordinates Reverse (-)

5028491 .. 5032042

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07660.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAATGACATACTTGCCCAGGTGGCGACAAAAACCGAGTCAAACAAAAATGCAGGAAATGCAATTCTATATGAATGTGTTGAAACTATCATGAGCATTGAAGATAGTGGTGGCTTACGTGTGCTTGCCATCAATATCTTGGGAAGATTCTTATCAAATCGTGACAACAATATCAGATACGTTGCATTAAATATGCTGATGAAGGCTATTACAGTTGATGCTCAAGCTGTGCAGAGGCATCGGGCAACTATCTTGGAATGTGTAAAGGATTCAGATGCCTCAATTCGGAAAAGGGCCCTTGAGCTTGTTTATGTGCTTGTGAATGAGAGCAATGTGAAGCCTCTAACAAAAGAGCTAATTGACTATTTGGAAATAAGTGATCAAGAATTCAAGGGAGATCTTACTGCAAAAATTTGCTCCATTGTTACAAAGTTTTCCCCCGAGAAGATTTGGTACATTGACCAGATGCTAAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCACGCACTTATTGTTGTGATTAGCAATGCTTCTGATCTCCATGGATATACGGTTAGGGCGTTATACCGAGCATTCCAATTATCAGCTGAACAGGAAAGTCTTGTTCGAGTCGCAATTTGGTGCATTGGAGAATATGGTGACATGTTGGTTAACAATGTTGGCATGCTCGATATAGAGGACCCAGTGACAGTAACAGAGTCTGACGCTGTGGATGTTATAGAGGTTGCAATTAAGCACCATACCTCGGATCTGACTACCAAAGCAATGGGTTTGATTGCTCTGTTGAAGCTATCTTCACGTTTCCCATCTTGTTCAGAGAGGATCGAGGATATAGTTGTTCAATACAAAGGAAGCCTTGTCCTCGAATTGCAGCAAAGATCCCTTGAATTGAACTCTATTATTGCGAAGCATCAGAACATTAGATCTACACTGGTTGAACGGATGCCAGTTTTGGATGAGGCAACTTTCATTGGAAAGAAGGCTGGTTCAATGCAATCTACAATTTCTTCTCCTTCTGGTGCTTCAATCAATCTACCAAATGGAGTTGCCAAACCTTCTGCAGCTCCTCTTGTGGATCTACTTGATCTAGGTTCAGATGATGTGCCAGCACCTAGCTCCTCTGGTGGTGATTTGCTTCATCGATCTTCTTGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0008150 GO:0012505 GO:0012506 GO:0012510 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030119 GO:0030120 GO:0030121 GO:0030125 GO:0030130 GO:0030131 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N Alpha_adaptinC2

Protein Analysis

391

Amino Acids

42.83

Weight (kDa)

5.16

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23900 AT1G23900 AT1G23900 AT1G60070 AT1G60070
fragaria_vesca	FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830 FvH4_4g34830
malus_domestica	MD13G1089300.v1.1 MD16G1089500.v1.1
prunus_persica	Prupe.1G256500_v2.0.a1
pyrus_communis	pycom13g07770 pycom16g07660
rosa_chinensis	RchiOBHm_Chr4g0444171
rosa_laevigata	RLG00000005850
rosa_multiflora	Rmu_sc0034408.1_g000001 Rmu_ssc0000462.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384760
rosa_rugosa	Rorug04G0350700 Rorug04G0350700
rosa_samantha	Rh4AG411400 Rh4BG422800 Rh4CG154500 Rh4CG437100 Rh4DG418100
rosa_wichuraiana	Rw4G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	771, 845, 888, 1098
AcsI	RAATTY	3 cut(s)	386, 411, 493
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	285, 760
AflIII	ACRYGT	2 cut(s)	118, 657
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	7 cut(s)	227, 304, 355, 602, 805, 1079, 1131
AluI	AGCT	7 cut(s)	227, 304, 355, 602, 805, 1079, 1131
AlwI	GGATC	4 cut(s)	771, 845, 888, 1098
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	294
ApaI	GGGCCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	886, 1076
ApoI	RAATTY	3 cut(s)	386, 411, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspS9I	GGNCC	3 cut(s)	294, 295, 694
AsuHPI	GGTGA	2 cut(s)	665, 1154
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	694
BaeGI	GKGCMC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	298
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BbvI	GCAGC	2 cut(s)	898, 1088
BccI	CCATC	2 cut(s)	137, 829
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	379
BfaI	CTAG	2 cut(s)	1103, 1128
BfmI	CTRYAG	1 cut(s)	1074
BglI	GCCNNNNNGGC	1 cut(s)	23
BglII	AGATCT	2 cut(s)	397, 938
BisI	GCNGC	2 cut(s)	887, 1077
BlsI	GCNGC	2 cut(s)	888, 1078
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	694
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	294, 295, 694
BmiI	GGNNCC	2 cut(s)	296, 696
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	692
BmsI	GCATC	6 cut(s)	208, 247, 265, 456, 934, 948
BmuI	ACTGGG	1 cut(s)	692
BpuEI	CTTGAG	2 cut(s)	207, 320
Bsa29I	ATCGAT	1 cut(s)	1156
BsaAI	YACGTR	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	18, 556, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 760
Bse1I	ACTGG	3 cut(s)	698, 951, 962
Bse3DI	GCAATG	3 cut(s)	337, 547, 786
Bse8I	GATNNNNATC	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	1156
BseDI	CCNNGG	3 cut(s)	18, 556, 759
BseGI	GGATG	3 cut(s)	733, 963, 976
BseJI	GATNNNNATC	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	285, 760
BseMI	GCAATG	3 cut(s)	337, 547, 786
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	3 cut(s)	698, 951, 962
BseRI	GAGGAG	2 cut(s)	1071, 1123
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	898, 1088
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	296
BshVI	ATCGAT	1 cut(s)	1156
BsiHKCI	CYCGRG	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	285, 760
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	440
Bsp120I	GGGCCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	556
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	475
BspDI	ATCGAT	1 cut(s)	1156
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	296, 696
BspMAI	CTGCAG	1 cut(s)	1078
BspPI	GGATC	4 cut(s)	771, 845, 888, 1098
BsrDI	GCAATG	3 cut(s)	337, 547, 786
BsrI	ACTGG	3 cut(s)	698, 951, 962
BssECI	CCNNGG	3 cut(s)	18, 556, 759
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	3 cut(s)	214, 568, 706
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	126, 519, 680, 1122
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	3 cut(s)	733, 963, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 59
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	2 cut(s)	661, 682
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	1074
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	898, 1088
BstX2I	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
Bsu15I	ATCGAT	1 cut(s)	1156
BsuRI	GGCC	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	1156
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	733, 963, 976
BtsIMutI	CAGTG	2 cut(s)	705, 944
Cac8I	GCNNGC	4 cut(s)	126, 519, 680, 1122
CaiI	CAGNNNCTG	1 cut(s)	716
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	294, 295, 694
ClaI	ATCGAT	1 cut(s)	1156
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	4 cut(s)	91, 557, 658, 679
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	694
Eco88I	CYCGRG	1 cut(s)	440
EcoO109I	RGGNCCY	3 cut(s)	294, 295, 694
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	4 cut(s)	94, 560, 661, 682
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FatI	CATG	4 cut(s)	90, 556, 657, 678
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	887, 1077
FokI	GGATG	3 cut(s)	740, 970, 983
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	887, 1077
FspBI	CTAG	2 cut(s)	1103, 1128
GluI	GCNGC	2 cut(s)	887, 1077
HaeIII	GGCC	1 cut(s)	296
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	4 cut(s)	94, 560, 661, 682
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	5 cut(s)	38, 147, 269, 624, 713
HpaI	GTTAAC	1 cut(s)	667
HphI	GGTGA	2 cut(s)	665, 1154
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188III	TCNNGA	3 cut(s)	91, 161, 383
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	4 cut(s)	196, 988, 1038, 1080
HpyCH4III	ACNGT	3 cut(s)	214, 568, 706
HpyCH4IV	ACGT	3 cut(s)	118, 180, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 59
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	3 cut(s)	118, 180, 814
Hsp92II	CATG	4 cut(s)	94, 560, 661, 682
Ksp22I	TGATCA	1 cut(s)	379
KspAI	GTTAAC	1 cut(s)	667
LmnI	GCTCC	3 cut(s)	422, 1084, 1136
Lsp1109I	GCAGC	2 cut(s)	898, 1088
LweI	GCATC	6 cut(s)	208, 247, 265, 456, 934, 948
MaeI	CTAG	2 cut(s)	1103, 1128
MaeII	ACGT	3 cut(s)	118, 180, 814
MaeIII	GTNAC	5 cut(s)	161, 424, 653, 700, 706
MboII	GAAGA	6 cut(s)	113, 156, 457, 801, 1014, 1152
MflI	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
MhlI	GDGCHC	1 cut(s)	298
MlyI	GAGTC	3 cut(s)	47, 633, 722
MseI	TTAA	3 cut(s)	188, 666, 747
MspA1I	CMGCKG	1 cut(s)	602
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	23, 59
NcoI	CCATGG	1 cut(s)	556
NlaIII	CATG	4 cut(s)	94, 560, 661, 682
NlaIV	GGNNCC	2 cut(s)	296, 696
NmuCI	GTSAC	3 cut(s)	161, 653, 700
NspI	RCATGY	2 cut(s)	661, 682
PaeI	GCATGC	1 cut(s)	682
PagI	TCATGA	1 cut(s)	90
PciI	ACATGT	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	147, 269
PkrI	GCNGC	2 cut(s)	888, 1078
PleI	GAGTC	3 cut(s)	46, 632, 721
PpsI	GAGTC	3 cut(s)	46, 632, 721
Ppu21I	YACGTR	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	694
PscI	ACATGT	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	296, 696
PspOMI	GGGCCC	1 cut(s)	294
PspPI	GGNCC	3 cut(s)	294, 295, 694
PspPPI	RGGWCCY	1 cut(s)	694
PstI	CTGCAG	1 cut(s)	1078
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	5 cut(s)	397, 763, 893, 938, 1090
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	188, 666, 747
SatI	GCNGC	2 cut(s)	887, 1077
Sau96I	GGNCC	3 cut(s)	294, 295, 694
SchI	GAGTC	3 cut(s)	47, 633, 722
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	6 cut(s)	208, 247, 265, 456, 934, 948
SfcI	CTRYAG	1 cut(s)	1074
SinI	GGWCC	1 cut(s)	694
SmlI	CTYRAG	2 cut(s)	222, 299
SmoI	CTYRAG	2 cut(s)	222, 299
SphI	GCATGC	1 cut(s)	682
SspMI	CTAG	2 cut(s)	1103, 1128
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	3 cut(s)	214, 568, 706
TaiI	ACGT	3 cut(s)	121, 183, 817
TaqI	TCGA	5 cut(s)	622, 684, 840, 879, 1156
TfiI	GAWTC	2 cut(s)	147, 269
Tru1I	TTAA	3 cut(s)	188, 666, 747
Tru9I	TTAA	3 cut(s)	188, 666, 747
TscAI	CASTG	2 cut(s)	705, 951
TseFI	GTSAC	3 cut(s)	161, 653, 700
TseI	GCWGC	2 cut(s)	886, 1076
Tsp45I	GTSAC	3 cut(s)	161, 653, 700
TspDTI	ATGAA	6 cut(s)	17, 87, 215, 522, 973, 1142
TspGWI	ACGGA	1 cut(s)	970
TspRI	CASTG	2 cut(s)	705, 951
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	3 cut(s)	386, 411, 493
XceI	RCATGY	2 cut(s)	661, 682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	1103, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.