MD16G1099400.v1.1

alpha-galactosidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
6916689 .. 6921132
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1099400.v1.1.491

Sequence Viewer

Length: 1929 bp
ATGAATGTCTGCTTGTTCCTCTTCACCTCTCTCTGCTTCTTACTCGGTCTGTTCACCCAGAGGGTGTCATCACAAGATCGCGCCAGCACCCCGCCGAGAGGTTGGAACTCGTATGACTCGTTTATCTGGACTATTTCAGAGGAAGAATTCTCCCAAAATGCCAAAATTATGGCAAAGCAGCTCCTTCCTCATGGATATGAGTATGCTGTGGTGGATTACCTGTGGTATAGGAGAAAAGTTCCAGGTGCTTATGTTGATTCTCTTGGGTTTGATGTGATCGATGAGTGGGGGAGGCCGATACCTGATCCAGATAGGTGGCCTTCGTCGAGAGGTGGGAAAGGGTTCGCTGAAGTGGCAGCAAAAGTACATAGCCTCGGTTTGAAATTCGGGATTCATGTCATGAGAGGAATAAGTACACAGGCAGTAAATGCGAGTACCTTGATCTTGGACACCAACACGGGGTCTGCTTACAAAGAGGCTGGAAGAAATTGGACTGCAAAAGATATAGGGATCAAGGAGAGGACTTGTGCATGGATGCACAATGGTTTCATGAGTGTGAATACCAAGTTGGGCGCTGGAAAGGCCTTCTTGAGGTCACTCTATAAACAGTATGCTGAATGGGGTGTTGATTTTGTGAAAAATGACTGCGTGTTTGGTGAAGACTTAGACGTACCCGAAATAACCTACATTTCAGACATTCTGAAGCAACTTGACCGTCCTATATTGTATTCTCTATCTCCTGGAACCAGAGTAACACCTGATATGGCCAAGGCTATAAGTGGAATGGTCAACATGTACCGTATAACTGGGGATGATTGGGATTCATGGGGAGATGTTCTAGCCCATTTTGATGTCACCAGGGATTTTGCTGCTGCTGATATGATAGGAGCCAAAGGCTTGCTGGGGAAGTCATGGCCGGACTTAGATATGCTTCCGTTGGGATGGCTTAGTGATCCAGGTTCAAATGACGGTCCACACAGATGGACTAATCTCGGTTTAAGGGAGCAAAGAACGCAGATGACTTTGTGGTCTATGGCCAGGTCTCCTCTCATGTTTGGAGGGGATATGAGACAGCTTAATGATGTCACAATGGAACTCCTTGCAAACCCTACCGTGCTGGAGATAAATTCTTTTAGCTCAAATAATAGGGAGTTTTCATACATTACAAGTAATGTGAGTGCAAAGGCCGTTAAGAATGATGATCACGTTCACACCTGGCAATCAAGAAGACATCTGACAAATGCAAAAACTACAAATACACATGTTCTTGGTCTCACTACCTGTGCAGATGCAAAAGCAATTGGTTGGTCCTCTCAAGCTCTTGACCAAGATCGCGAACACATCTGCTGGACGGCAAACTCAAGGGGCAAACATCAGGCACCTTTTTGCTTAAACAAGACAGAATCTCTCCTGGCAATAGATGAAGACATAACGGACAAACAGCAATATCTGGGGAAGGTCAATTTATTAGCAAATGATGGAACGGATCGCTGTTTGCATGCTTCTCCTAAACAAAAGCTTACTTCGAAGGACGTTAAGAGAGGTTTCCTTTCACCTTGTAGATGGGATGCAAACCAGATGTGGGAGTTGAACCCCAACGGAACCTTGGTGAATAGTTATTCTGGCCTCTGTGCAAGAATTGATTCTTTATTTGAAGCTAAAGCCGTCACTGATGTTGCTCGCTCTTGGATTGCAACTGGAACAAAAGGAGAAATATACATAGCGTTTTTCAATTTGTTCAGTGATTGGGCTACTATAACTGCACAAAGAGCAGACATAGTCAAAGAACTTCCAATGACAAAATTGGCCAGAGGTTCTTGCACGGGATCGGAAGTATGGACCGGACAAGACTTAGGGGTAATAGGCGACGCAATTTCTTTTTCGGTTATACCGCACGGGGTTGCACTGATTGTCCTGCACTGTAGTTAG

Protein Analysis

643

Amino Acids

71.52

Weight (kDa)

6.33

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Melibiase_2 PF16499 202 - 376 1.9e-12 Alpha galactosidase A
Melibiase_C PF17801 562 - 639 8.2e-07 Alpha galactosidase C-terminal beta sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012236)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1027
AccB1I GGYRCC 1 cut(s) 1378
AccII CGCG 2 cut(s) 81, 1335
AciI CCGC 2 cut(s) 92, 1892
AclWI GGATC 5 cut(s) 299, 518, 947, 1494, 1834
AcoI YGGCCR 4 cut(s) 765, 914, 1035, 1806
AcsI RAATTY 3 cut(s) 146, 383, 1126
AcuI CTGAAG 2 cut(s) 369, 722
AfaI GTAC 5 cut(s) 366, 415, 436, 672, 797
AfiI CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
AflIII ACRYGT 2 cut(s) 792, 1261
AgsI TTSAA 5 cut(s) 382, 963, 1591, 1655, 1732
AjnI CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 6 cut(s) 181, 1075, 1137, 1319, 1519, 1658
AluI AGCT 6 cut(s) 181, 1075, 1137, 1319, 1519, 1658
Alw26I GTCTC 3 cut(s) 1047, 1063, 1277
AlwI GGATC 5 cut(s) 299, 518, 947, 1494, 1834
AoxI GGCC 9 cut(s) 293, 317, 582, 765, 914, 1035, 1185, 1624, 1806
ApeKI GCWGC 4 cut(s) 178, 356, 869, 872
ApoI RAATTY 3 cut(s) 146, 383, 1126
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
Asp700I GAANNNNTTC 2 cut(s) 341, 1642
AspLEI GCGC 2 cut(s) 83, 575
AspS9I GGNCC 3 cut(s) 971, 1308, 1839
AsuHPI GGTGA 6 cut(s) 16, 46, 668, 847, 1545, 1621
AsuII TTCGAA 1 cut(s) 1526
AvaII GGWCC 3 cut(s) 971, 1308, 1839
BalI TGGCCA 3 cut(s) 767, 1037, 1808
BanI GGYRCC 1 cut(s) 1378
BbsI GAAGAC 3 cut(s) 666, 1234, 1431
BbvI GCAGC 4 cut(s) 190, 368, 856, 859
BccI CCATC 4 cut(s) 936, 975, 1472, 1557
BceAI ACGGC 3 cut(s) 1172, 1368, 1649
BciT130I CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BclI TGATCA 1 cut(s) 1201
BcoDI GTCTC 3 cut(s) 1047, 1063, 1277
BfaI CTAG 1 cut(s) 839
BfmI CTRYAG 1 cut(s) 1921
BfoI RGCGCY 1 cut(s) 576
BisI GCNGC 4 cut(s) 179, 357, 870, 873
BlsI GCNGC 4 cut(s) 180, 358, 871, 874
Bme1390I CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
Bme18I GGWCC 3 cut(s) 971, 1308, 1839
BmgT120I GGNCC 3 cut(s) 971, 1308, 1839
BmiI GGNNCC 4 cut(s) 745, 889, 1380, 1603
BmrFI CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BmrI ACTGGG 1 cut(s) 816
BmsI GCATC 3 cut(s) 525, 1279, 1558
BmuI ACTGGG 1 cut(s) 816
BpiI GAAGAC 3 cut(s) 666, 1234, 1431
BpmI CTGGAG 1 cut(s) 1139
Bpu14I TTCGAA 1 cut(s) 1526
BpuEI CTTGAG 3 cut(s) 610, 1299, 1345
Bsa29I ATCGAT 1 cut(s) 279
BsaI GGTCTC 2 cut(s) 1047, 1277
BsaJI CCNNGG 4 cut(s) 373, 768, 858, 1605
BsaWI WCCGGW 1 cut(s) 1841
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
Bse1I ACTGG 2 cut(s) 811, 1702
BseBI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 4 cut(s) 373, 768, 858, 1605
BseGI GGATG 4 cut(s) 540, 817, 947, 1573
BseLI CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
BseNI ACTGG 2 cut(s) 811, 1702
BseRI GAGGAG 1 cut(s) 1035
BseXI GCAGC 4 cut(s) 190, 368, 856, 859
BseYI CCCAGC 1 cut(s) 901
BsgI GTGCAG 3 cut(s) 1305, 1746, 1901
Bsh1236I CGCG 2 cut(s) 81, 1335
BshFI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1808
BshNI GGYRCC 1 cut(s) 1378
BshVI ATCGAT 1 cut(s) 279
BsiSI CCGG 2 cut(s) 917, 1842
BslI CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
BsmAI GTCTC 3 cut(s) 1047, 1063, 1277
BsnI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1808
Bso31I GGTCTC 2 cut(s) 1047, 1277
Bsp119I TTCGAA 1 cut(s) 1526
Bsp68I TCGCGA 1 cut(s) 1335
BspACI CCGC 2 cut(s) 92, 1892
BspANI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1808
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 2 cut(s) 81, 1335
BspHI TCATGA 2 cut(s) 399, 549
BspLI GGNNCC 4 cut(s) 745, 889, 1380, 1603
BspPI GGATC 5 cut(s) 299, 518, 947, 1494, 1834
BspT104I TTCGAA 1 cut(s) 1526
BspT107I GGYRCC 1 cut(s) 1378
BspTNI GGTCTC 2 cut(s) 1047, 1277
BsrI ACTGG 2 cut(s) 811, 1702
BssECI CCNNGG 4 cut(s) 373, 768, 858, 1605
BssT1I CCWWGG 2 cut(s) 768, 1605
Bst2UI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
Bst4CI ACNGT 6 cut(s) 609, 716, 800, 971, 1114, 1922
Bst6I CTCTTC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBI TTCGAA 1 cut(s) 1526
BstC8I GCNNGC 4 cut(s) 85, 899, 1500, 1681
BstDEI CTNAG 4 cut(s) 664, 922, 947, 1852
BstENI CCTNNNNNAGG 1 cut(s) 589
BstF5I GGATG 4 cut(s) 540, 817, 947, 1573
BstFNI CGCG 2 cut(s) 81, 1335
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 2 cut(s) 83, 575
BstMAI GTCTC 3 cut(s) 1047, 1063, 1277
BstMWI GCNNNNNNNGC 5 cut(s) 353, 428, 581, 1012, 1769
BstNI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BstNSI RCATGY 3 cut(s) 796, 1265, 1502
BstSCI CCNGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
BstSFI CTRYAG 1 cut(s) 1921
BstUI CGCG 2 cut(s) 81, 1335
BstV1I GCAGC 4 cut(s) 190, 368, 856, 859
BstV2I GAAGAC 3 cut(s) 666, 1234, 1431
BstXI CCANNNNNNTGG 3 cut(s) 169, 315, 981
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1808
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 4 cut(s) 540, 817, 947, 1573
BtsIMutI CAGTG 4 cut(s) 1668, 1747, 1904, 1918
BtuMI TCGCGA 1 cut(s) 1335
Cac8I GCNNGC 4 cut(s) 85, 899, 1500, 1681
CciI TCATGA 2 cut(s) 399, 549
CfoI GCGC 2 cut(s) 83, 575
Cfr13I GGNCC 3 cut(s) 971, 1308, 1839
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 1877
Csp6I GTAC 5 cut(s) 365, 414, 435, 671, 796
CviQI GTAC 5 cut(s) 365, 414, 435, 671, 796
DdeI CTNAG 4 cut(s) 664, 922, 947, 1852
DrdI GACNNNNNNGTC 1 cut(s) 1027
DseDI GACNNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 4 cut(s) 765, 914, 1035, 1806
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 768, 1605
Eco147I AGGCCT 1 cut(s) 584
Eco31I GGTCTC 2 cut(s) 1047, 1277
Eco47I GGWCC 3 cut(s) 971, 1308, 1839
Eco57I CTGAAG 2 cut(s) 369, 722
EcoNI CCTNNNNNAGG 1 cut(s) 589
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
EcoT14I CCWWGG 2 cut(s) 768, 1605
ErhI CCWWGG 2 cut(s) 768, 1605
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FauI CCCGC 1 cut(s) 99
FbaI TGATCA 1 cut(s) 1201
Fnu4HI GCNGC 4 cut(s) 179, 357, 870, 873
FokI GGATG 4 cut(s) 547, 824, 954, 1580
Fsp4HI GCNGC 4 cut(s) 179, 357, 870, 873
FspBI CTAG 1 cut(s) 839
GlaI GCGC 2 cut(s) 82, 574
GluI GCNGC 4 cut(s) 179, 357, 870, 873
GsaI CCCAGC 1 cut(s) 905
GsuI CTGGAG 1 cut(s) 1139
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1808
HapII CCGG 2 cut(s) 917, 1842
HgaI GACGC 1 cut(s) 1877
HhaI GCGC 2 cut(s) 83, 575
Hin6I GCGC 2 cut(s) 81, 573
HinP1I GCGC 2 cut(s) 81, 573
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 1517
HinfI GANTC 6 cut(s) 116, 257, 391, 821, 1403, 1643
HpaII CCGG 2 cut(s) 917, 1842
HphI GGTGA 6 cut(s) 16, 46, 668, 847, 1545, 1621
Hpy166II GTNNAC 5 cut(s) 54, 416, 790, 974, 1210
Hpy188I TCNGA 5 cut(s) 139, 694, 702, 1236, 1831
Hpy8I GTNNAC 5 cut(s) 54, 416, 790, 974, 1210
Hpy99I CGWCG 2 cut(s) 328, 1871
HpyAV CCTTC 5 cut(s) 194, 330, 595, 1450, 1522
HpyCH4III ACNGT 6 cut(s) 609, 716, 800, 971, 1114, 1922
HpyCH4IV ACGT 3 cut(s) 669, 1206, 1533
HpyF10VI GCNNNNNNNGC 5 cut(s) 353, 428, 581, 1012, 1769
HpyF3I CTNAG 4 cut(s) 664, 922, 947, 1852
HpySE526I ACGT 3 cut(s) 669, 1206, 1533
HspAI GCGC 2 cut(s) 81, 573
Ksp22I TGATCA 1 cut(s) 1201
LmnI GCTCC 3 cut(s) 186, 887, 1003
Lsp1109I GCAGC 4 cut(s) 190, 368, 856, 859
LweI GCATC 3 cut(s) 525, 1279, 1558
MaeI CTAG 1 cut(s) 839
MaeII ACGT 3 cut(s) 669, 1206, 1533
MaeIII GTNAC 5 cut(s) 594, 751, 853, 1084, 1666
MboII GAAGA 6 cut(s) 13, 155, 495, 671, 1239, 1436
MfeI CAATTG 1 cut(s) 1299
MlsI TGGCCA 3 cut(s) 767, 1037, 1808
MluNI TGGCCA 3 cut(s) 767, 1037, 1808
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 83
Mox20I TGGCCA 3 cut(s) 767, 1037, 1808
MroXI GAANNNNTTC 2 cut(s) 341, 1642
MscI TGGCCA 3 cut(s) 767, 1037, 1808
MseI TTAA 5 cut(s) 998, 1077, 1191, 1391, 1536
MslI CAYNNNNRTG 4 cut(s) 195, 554, 849, 979
Msp20I TGGCCA 3 cut(s) 767, 1037, 1808
MspI CCGG 2 cut(s) 917, 1842
MspR9I CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
MunI CAATTG 1 cut(s) 1299
MvaI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
MvnI CGCG 2 cut(s) 81, 1335
MwoI GCNNNNNNNGC 5 cut(s) 353, 428, 581, 1012, 1769
NlaIV GGNNCC 4 cut(s) 745, 889, 1380, 1603
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 4 cut(s) 594, 853, 1084, 1666
NruI TCGCGA 1 cut(s) 1335
NspI RCATGY 3 cut(s) 796, 1265, 1502
NspV TTCGAA 1 cut(s) 1526
PaeI GCATGC 1 cut(s) 1502
PagI TCATGA 2 cut(s) 399, 549
PceI AGGCCT 1 cut(s) 584
PciI ACATGT 2 cut(s) 792, 1261
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdmI GAANNNNTTC 2 cut(s) 341, 1642
PfeI GAWTC 5 cut(s) 257, 391, 821, 1403, 1643
PflFI GACNNNGTC 1 cut(s) 1778
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 4 cut(s) 180, 358, 871, 874
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PscI ACATGT 2 cut(s) 792, 1261
Psp6I CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
PspFI CCCAGC 1 cut(s) 901
PspGI CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
PspN4I GGNNCC 4 cut(s) 745, 889, 1380, 1603
PspPI GGNCC 3 cut(s) 971, 1308, 1839
PsyI GACNNNGTC 1 cut(s) 1778
RruI TCGCGA 1 cut(s) 1335
RsaI GTAC 5 cut(s) 366, 415, 436, 672, 797
RsaNI GTAC 5 cut(s) 365, 414, 435, 671, 796
RseI CAYNNNNRTG 4 cut(s) 195, 554, 849, 979
SaqAI TTAA 5 cut(s) 998, 1077, 1191, 1391, 1536
SatI GCNGC 4 cut(s) 179, 357, 870, 873
Sau96I GGNCC 3 cut(s) 971, 1308, 1839
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
SfaNI GCATC 3 cut(s) 525, 1279, 1558
SfcI CTRYAG 1 cut(s) 1921
SfuI TTCGAA 1 cut(s) 1526
SinI GGWCC 3 cut(s) 971, 1308, 1839
SmiMI CAYNNNNRTG 4 cut(s) 195, 554, 849, 979
SmlI CTYRAG 3 cut(s) 589, 1314, 1360
SmoI CTYRAG 3 cut(s) 589, 1314, 1360
SphI GCATGC 1 cut(s) 1502
SseBI AGGCCT 1 cut(s) 584
SsiI CCGC 2 cut(s) 92, 1892
SspMI CTAG 1 cut(s) 839
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
StyI CCWWGG 2 cut(s) 768, 1605
TaaI ACNGT 6 cut(s) 609, 716, 800, 971, 1114, 1922
TaiI ACGT 3 cut(s) 672, 1209, 1536
TaqI TCGA 3 cut(s) 279, 326, 1526
TaqII GACCGA 1 cut(s) 35
TatI WGTACW 2 cut(s) 364, 413
TfiI GAWTC 5 cut(s) 257, 391, 821, 1403, 1643
Tru1I TTAA 5 cut(s) 998, 1077, 1191, 1391, 1536
Tru9I TTAA 5 cut(s) 998, 1077, 1191, 1391, 1536
TscAI CASTG 4 cut(s) 1675, 1747, 1911, 1925
TseFI GTSAC 4 cut(s) 594, 853, 1084, 1666
TseI GCWGC 4 cut(s) 178, 356, 869, 872
Tsp45I GTSAC 4 cut(s) 594, 853, 1084, 1666
TspDTI ATGAA 6 cut(s) 17, 383, 538, 813, 1146, 1437
TspGWI ACGGA 4 cut(s) 924, 1448, 1499, 1614
TspRI CASTG 4 cut(s) 1675, 1747, 1911, 1925
Tth111I GACNNNGTC 1 cut(s) 1778
VpaK11BI GGWCC 3 cut(s) 971, 1308, 1839
XagI CCTNNNNNAGG 1 cut(s) 589
XapI RAATTY 3 cut(s) 146, 383, 1126
XceI RCATGY 3 cut(s) 796, 1265, 1502
XcmI CCANNNNNNNNNTGG 2 cut(s) 898, 1603
XmnI GAANNNNTTC 2 cut(s) 341, 1642
XspI CTAG 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.