pycom16g08460

alpha-galactosidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
5610306 .. 5614365
4060 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08460.5

Sequence Viewer

Length: 1950 bp
ATGAATGTCTCCTTGTTCCTCTTCACCTTTCTCTGCTTCTTACTCGGTCTGTTCACCCAGAGGGTGTCATCACAAGATCGCGCTAGCACCCCGCCGAGAGGTTGGAACTCGTATGACTCGTTTATCTGGACTATTTCAGAGGAAGAGTTCTCCCAAAATGCCGAAATTATGGCAAAGCAGCTCCTTCCTCATGGATATGAGTATGCTGTGGTGGATTACCTGTGGTATAGGAGAAAAGTTCCAGGTGCTTATGTTGATTCGCTTGGGTTTGATGTGATCGATGAGTGGGGGAGGCCGATACCTGATCCAGATAGGTGGCCTTCGTCGAGAGGTGGGAAAGGGTTCGCTGAAGTGGCAGCAAAAGTACATAGCCTCGGTTTGAAATTCGGGATTCATGTCATGAGAGGAATAAGTACACAGGCAGTAAATGCAAATACCTTGATCTTGGACACCAACACGGGGTCTGCTTACAAAGAGGCTGGAAGAAATTGGACTGCAAAAGATATAGGGATCAAGGAGAGGACTTGTGCATGGATGCACAATGGTTTCATGAGCGTAAATACCGAGTTGGGCGCTGGAAAGGCCTTCTTGAGGTCACTCTATAAACAGTATGCTGAATGGGGTGTTGATTTTGTGAAAAATGACTGTGTGTTTGGTGAAGACTTAGATGTACCAGAAATAACCTACATTTCAGAGATTCTGAAGCAACTTGACCGTCCTATATTGTATTCTCTATCTCCTGGAACCAGAGTAACACCTGATATGGCCAAGGCTATAAGTGGAATGGTCAACATGTACCGTATAACTGGGGATGATTGGGATTCATGGGGAGATGTTCTAGCCCATTTTGATGTAACCAGGGATTTTGCTGCTGCTGATATGATAGGAGCCAAAGGCTTGCTAGGGAAGTCATGGCCGGACTTAGATATGCTTCCATTGGGATGGCTTAGTGATCCAGGTTCAAATGACGGTCCACACAGATGGACTAATCTCGGTTTAATGGAGCAAAGAACGCAGATGACTTTGTGGTCTATGGCCAGGTCTCCTCTTATGTTTGGAGGGGATATGAGACAGCTTAATGATGTCACAATGGAACTCCTTGCAAATCCTACTGTGCTGGAGATAAATTCTTTTAGCTCAAATAATAGGGAGTTTTCATACGTTACCAGTAATGTGAGTGCAAGGGCCGTTGAGAATGATGATCAGGTTCACACCTGGCAATCAAGAAGACATCTGACAAATGCGAAAACTGCAAATACACATGCTCTTGGTCTCACTACCTGTGCAGATGCAAAAGCAATTGGTTGGTCCTCTCAAGCTCTTGACCAAGATCCTGAACACATCTGCTGGACGGCAAACTCAAGGGGCAAACATCAGGCAGCTTTTTGCTTAAACAAGAGAGAATCTCTCCTGGCAATAGATGAAGACATAACGGACAAACAGCAATATCAGGGGAAGGTCAATTTATTAGCCAATGATGGAACGGATCGCTGTTTGCATGCTTCTCCTAAACAAAAGCTTACTTCGAAGGACGTTAAGAGAGGTTTCTTTTCACCTTGTAGATGGGATGCAAACCAGATGTGGGAGTTGAACCCCAACGGAACCTTGGTGAATAGTTATTCTGGCCTCTGTGCAAGAATTGATTCTTTATTTGAAGGTAATAAATTAAAACACGAGTCTAAAGCCGTCACCGATGTTGCTCGCTCTTGGATTGCAACTGGAACAAAAGGAGAAATATACATAGCGTTTTTCAATTTGTTCGATGATTGGGCTACTATAACTGCACAAAGAGCAGACATAGTCAAAGAACTTCCAATGACAAACTTGGCCAGAGGTTCTTGCACGGGATCGGAAGTATGGACCGGACAAGACTTAGGGGTAATAGGCGACGCAATTTCTTTTTCGGTCGTACCGCACGGGGCTGCACTGATTGTCCTGCACTGTATTTAG

Protein Analysis

650

Amino Acids

72.37

Weight (kDa)

5.65

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012236)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1027
AccII CGCG 1 cut(s) 81
AciI CCGC 2 cut(s) 92, 1913
AclWI GGATC 6 cut(s) 299, 518, 947, 1325, 1494, 1855
AcoI YGGCCR 4 cut(s) 765, 914, 1035, 1827
AcsI RAATTY 2 cut(s) 383, 1126
AcuI CTGAAG 2 cut(s) 369, 722
AfaI GTAC 5 cut(s) 366, 415, 672, 797, 1911
AfiI CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 5 cut(s) 382, 963, 1591, 1655, 1753
AjnI CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
AluBI AGCT 6 cut(s) 181, 1075, 1137, 1319, 1382, 1519
AluI AGCT 6 cut(s) 181, 1075, 1137, 1319, 1382, 1519
Alw26I GTCTC 4 cut(s) 13, 1047, 1063, 1277
AlwI GGATC 6 cut(s) 299, 518, 947, 1325, 1494, 1855
AoxI GGCC 9 cut(s) 293, 317, 582, 765, 914, 1035, 1185, 1624, 1827
ApeKI GCWGC 6 cut(s) 178, 356, 869, 872, 1379, 1922
ApoI RAATTY 2 cut(s) 383, 1126
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
Asp700I GAANNNNTTC 2 cut(s) 341, 1642
AspLEI GCGC 2 cut(s) 83, 575
AspS9I GGNCC 4 cut(s) 971, 1185, 1308, 1860
AsuHPI GGTGA 6 cut(s) 16, 46, 668, 1545, 1621, 1681
AsuII TTCGAA 1 cut(s) 1526
AsuNHI GCTAGC 1 cut(s) 83
AvaII GGWCC 3 cut(s) 971, 1308, 1860
BalI TGGCCA 3 cut(s) 767, 1037, 1829
BauI CACGAG 1 cut(s) 1673
BbsI GAAGAC 3 cut(s) 666, 1234, 1431
BbvI GCAGC 6 cut(s) 190, 368, 856, 859, 1391, 1909
BccI CCATC 4 cut(s) 936, 975, 1472, 1557
BceAI ACGGC 3 cut(s) 1172, 1368, 1670
BciT130I CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BclI TGATCA 1 cut(s) 1201
BcoDI GTCTC 4 cut(s) 13, 1047, 1063, 1277
BfaI CTAG 3 cut(s) 84, 839, 902
BfoI RGCGCY 1 cut(s) 576
BisI GCNGC 6 cut(s) 179, 357, 870, 873, 1380, 1923
BlsI GCNGC 6 cut(s) 180, 358, 871, 874, 1381, 1924
Bme1390I CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
Bme18I GGWCC 3 cut(s) 971, 1308, 1860
BmgT120I GGNCC 4 cut(s) 971, 1185, 1308, 1860
BmiI GGNNCC 3 cut(s) 745, 889, 1603
BmrFI CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BmrI ACTGGG 1 cut(s) 816
BmsI GCATC 3 cut(s) 525, 1279, 1558
BmtI GCTAGC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 816
BpiI GAAGAC 3 cut(s) 666, 1234, 1431
BplI GAGNNNNNCTC 4 cut(s) 1390, 1422, 1392, 1424
BpmI CTGGAG 1 cut(s) 1139
Bpu14I TTCGAA 1 cut(s) 1526
BpuEI CTTGAG 3 cut(s) 610, 1299, 1345
Bsa29I ATCGAT 1 cut(s) 279
BsaI GGTCTC 2 cut(s) 1047, 1277
BsaJI CCNNGG 4 cut(s) 373, 768, 858, 1605
BsaWI WCCGGW 1 cut(s) 1862
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
Bse1I ACTGG 3 cut(s) 811, 1167, 1723
BseBI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 4 cut(s) 373, 768, 858, 1605
BseGI GGATG 4 cut(s) 540, 817, 947, 1573
BseLI CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
BseNI ACTGG 3 cut(s) 811, 1167, 1723
BseRI GAGGAG 1 cut(s) 1035
BseXI GCAGC 6 cut(s) 190, 368, 856, 859, 1391, 1909
BsgI GTGCAG 4 cut(s) 1305, 1767, 1908, 1922
Bsh1236I CGCG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 1908
BshFI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1829
BshVI ATCGAT 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 1908
BsiSI CCGG 2 cut(s) 917, 1863
BslI CCNNNNNNNGG 4 cut(s) 98, 459, 591, 1582
BsmAI GTCTC 4 cut(s) 13, 1047, 1063, 1277
BsnI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1829
Bso31I GGTCTC 2 cut(s) 1047, 1277
Bsp119I TTCGAA 1 cut(s) 1526
BspACI CCGC 2 cut(s) 92, 1913
BspANI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1829
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 2 cut(s) 399, 549
BspLI GGNNCC 3 cut(s) 745, 889, 1603
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 6 cut(s) 299, 518, 947, 1325, 1494, 1855
BspT104I TTCGAA 1 cut(s) 1526
BspTNI GGTCTC 2 cut(s) 1047, 1277
BsrI ACTGG 3 cut(s) 811, 1167, 1723
BssECI CCNNGG 4 cut(s) 373, 768, 858, 1605
BssSI CACGAG 1 cut(s) 1673
BssT1I CCWWGG 2 cut(s) 768, 1605
Bst2BI CACGAG 1 cut(s) 1673
Bst2UI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
Bst4CI ACNGT 7 cut(s) 609, 647, 716, 800, 971, 1114, 1943
Bst6I CTCTTC 2 cut(s) 26, 138
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBI TTCGAA 1 cut(s) 1526
BstC8I GCNNGC 4 cut(s) 85, 899, 1500, 1702
BstDEI CTNAG 4 cut(s) 664, 922, 947, 1873
BstENI CCTNNNNNAGG 1 cut(s) 589
BstF5I GGATG 4 cut(s) 540, 817, 947, 1573
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 2 cut(s) 83, 575
BstMAI GTCTC 4 cut(s) 13, 1047, 1063, 1277
BstMCI CGRYCG 1 cut(s) 1908
BstMWI GCNNNNNNNGC 6 cut(s) 353, 428, 581, 1012, 1250, 1790
BstNI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
BstNSI RCATGY 3 cut(s) 796, 1265, 1502
BstSCI CCNGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 6 cut(s) 190, 368, 856, 859, 1391, 1909
BstV2I GAAGAC 3 cut(s) 666, 1234, 1431
BstX2I RGATCY 1 cut(s) 1330
BstXI CCANNNNNNTGG 3 cut(s) 315, 942, 981
BstYI RGATCY 1 cut(s) 1330
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1829
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 4 cut(s) 540, 817, 947, 1573
BtsIMutI CAGTG 2 cut(s) 1925, 1939
Cac8I GCNNGC 4 cut(s) 85, 899, 1500, 1702
CciI TCATGA 2 cut(s) 399, 549
CfoI GCGC 2 cut(s) 83, 575
Cfr13I GGNCC 4 cut(s) 971, 1185, 1308, 1860
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 1898
Csp6I GTAC 5 cut(s) 365, 414, 671, 796, 1910
CviQI GTAC 5 cut(s) 365, 414, 671, 796, 1910
DdeI CTNAG 4 cut(s) 664, 922, 947, 1873
DrdI GACNNNNNNGTC 1 cut(s) 1027
DseDI GACNNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 4 cut(s) 765, 914, 1035, 1827
Eam1104I CTCTTC 2 cut(s) 26, 138
EarI CTCTTC 2 cut(s) 26, 138
Eco130I CCWWGG 2 cut(s) 768, 1605
Eco147I AGGCCT 1 cut(s) 584
Eco31I GGTCTC 2 cut(s) 1047, 1277
Eco47I GGWCC 3 cut(s) 971, 1308, 1860
Eco57I CTGAAG 2 cut(s) 369, 722
EcoNI CCTNNNNNAGG 1 cut(s) 589
EcoRII CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
EcoT14I CCWWGG 2 cut(s) 768, 1605
ErhI CCWWGG 2 cut(s) 768, 1605
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FauI CCCGC 1 cut(s) 99
FbaI TGATCA 1 cut(s) 1201
Fnu4HI GCNGC 6 cut(s) 179, 357, 870, 873, 1380, 1923
FokI GGATG 4 cut(s) 547, 824, 954, 1580
Fsp4HI GCNGC 6 cut(s) 179, 357, 870, 873, 1380, 1923
FspBI CTAG 3 cut(s) 84, 839, 902
GlaI GCGC 2 cut(s) 82, 574
GluI GCNGC 6 cut(s) 179, 357, 870, 873, 1380, 1923
GsuI CTGGAG 1 cut(s) 1139
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 9 cut(s) 295, 319, 584, 767, 916, 1037, 1187, 1626, 1829
HapII CCGG 2 cut(s) 917, 1863
HgaI GACGC 1 cut(s) 1898
HhaI GCGC 2 cut(s) 83, 575
Hin6I GCGC 2 cut(s) 81, 573
HinP1I GCGC 2 cut(s) 81, 573
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 1517
HinfI GANTC 8 cut(s) 116, 257, 391, 697, 821, 1403, 1643, 1676
HpaII CCGG 2 cut(s) 917, 1863
HphI GGTGA 6 cut(s) 16, 46, 668, 1545, 1621, 1681
Hpy166II GTNNAC 5 cut(s) 54, 416, 790, 974, 1210
Hpy188I TCNGA 5 cut(s) 139, 694, 702, 1236, 1852
Hpy8I GTNNAC 5 cut(s) 54, 416, 790, 974, 1210
Hpy99I CGWCG 2 cut(s) 328, 1892
HpyAV CCTTC 6 cut(s) 194, 330, 595, 1450, 1522, 1649
HpyCH4III ACNGT 7 cut(s) 609, 647, 716, 800, 971, 1114, 1943
HpyCH4IV ACGT 2 cut(s) 1161, 1533
HpyF10VI GCNNNNNNNGC 6 cut(s) 353, 428, 581, 1012, 1250, 1790
HpyF3I CTNAG 4 cut(s) 664, 922, 947, 1873
HpySE526I ACGT 2 cut(s) 1161, 1533
HspAI GCGC 2 cut(s) 81, 573
Ksp22I TGATCA 1 cut(s) 1201
LmnI GCTCC 3 cut(s) 186, 887, 1003
Lsp1109I GCAGC 6 cut(s) 190, 368, 856, 859, 1391, 1909
LweI GCATC 3 cut(s) 525, 1279, 1558
MaeI CTAG 3 cut(s) 84, 839, 902
MaeII ACGT 2 cut(s) 1161, 1533
MaeIII GTNAC 6 cut(s) 594, 751, 853, 1084, 1162, 1687
MboII GAAGA 6 cut(s) 13, 155, 495, 671, 1239, 1436
MfeI CAATTG 1 cut(s) 1299
MflI RGATCY 1 cut(s) 1330
MlsI TGGCCA 3 cut(s) 767, 1037, 1829
MluNI TGGCCA 3 cut(s) 767, 1037, 1829
MlyI GAGTC 2 cut(s) 110, 1685
MmeI TCCRAC 1 cut(s) 83
Mox20I TGGCCA 3 cut(s) 767, 1037, 1829
MroXI GAANNNNTTC 2 cut(s) 341, 1642
MscI TGGCCA 3 cut(s) 767, 1037, 1829
MseI TTAA 5 cut(s) 998, 1077, 1391, 1536, 1667
MslI CAYNNNNRTG 4 cut(s) 195, 849, 940, 979
Msp20I TGGCCA 3 cut(s) 767, 1037, 1829
MspI CCGG 2 cut(s) 917, 1863
MspR9I CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
MunI CAATTG 1 cut(s) 1299
MvaI CCWGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 6 cut(s) 353, 428, 581, 1012, 1250, 1790
NheI GCTAGC 1 cut(s) 83
NlaIV GGNNCC 3 cut(s) 745, 889, 1603
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 3 cut(s) 594, 1084, 1687
NspI RCATGY 3 cut(s) 796, 1265, 1502
NspV TTCGAA 1 cut(s) 1526
PaeI GCATGC 1 cut(s) 1502
PagI TCATGA 2 cut(s) 399, 549
PceI AGGCCT 1 cut(s) 584
PciI ACATGT 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdmI GAANNNNTTC 2 cut(s) 341, 1642
PfeI GAWTC 6 cut(s) 257, 391, 697, 821, 1403, 1643
PflFI GACNNNGTC 1 cut(s) 1799
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 6 cut(s) 180, 358, 871, 874, 1381, 1924
PleI GAGTC 2 cut(s) 110, 1684
PpsI GAGTC 2 cut(s) 110, 1684
PscI ACATGT 1 cut(s) 792
Psp6I CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
PspGI CCWGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
PspN4I GGNNCC 3 cut(s) 745, 889, 1603
PspPI GGNCC 4 cut(s) 971, 1185, 1308, 1860
PsuI RGATCY 1 cut(s) 1330
PsyI GACNNNGTC 1 cut(s) 1799
RsaI GTAC 5 cut(s) 366, 415, 672, 797, 1911
RsaNI GTAC 5 cut(s) 365, 414, 671, 796, 1910
RseI CAYNNNNRTG 4 cut(s) 195, 849, 940, 979
SaqAI TTAA 5 cut(s) 998, 1077, 1391, 1536, 1667
SatI GCNGC 6 cut(s) 179, 357, 870, 873, 1380, 1923
Sau96I GGNCC 4 cut(s) 971, 1185, 1308, 1860
SchI GAGTC 2 cut(s) 110, 1685
ScrFI CCNGG 7 cut(s) 243, 741, 859, 957, 1039, 1216, 1412
SfaNI GCATC 3 cut(s) 525, 1279, 1558
SfuI TTCGAA 1 cut(s) 1526
SinI GGWCC 3 cut(s) 971, 1308, 1860
SmiMI CAYNNNNRTG 4 cut(s) 195, 849, 940, 979
SmlI CTYRAG 3 cut(s) 589, 1314, 1360
SmoI CTYRAG 3 cut(s) 589, 1314, 1360
SphI GCATGC 1 cut(s) 1502
SseBI AGGCCT 1 cut(s) 584
SsiI CCGC 2 cut(s) 92, 1913
SspMI CTAG 3 cut(s) 84, 839, 902
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 7 cut(s) 241, 739, 857, 955, 1037, 1214, 1410
StyI CCWWGG 2 cut(s) 768, 1605
TaaI ACNGT 7 cut(s) 609, 647, 716, 800, 971, 1114, 1943
TaiI ACGT 2 cut(s) 1164, 1536
TaqI TCGA 4 cut(s) 279, 326, 1526, 1761
TaqII GACCGA 2 cut(s) 35, 1894
TatI WGTACW 2 cut(s) 364, 413
TfiI GAWTC 6 cut(s) 257, 391, 697, 821, 1403, 1643
Tru1I TTAA 5 cut(s) 998, 1077, 1391, 1536, 1667
Tru9I TTAA 5 cut(s) 998, 1077, 1391, 1536, 1667
TscAI CASTG 2 cut(s) 1932, 1946
TseFI GTSAC 3 cut(s) 594, 1084, 1687
TseI GCWGC 6 cut(s) 178, 356, 869, 872, 1379, 1922
Tsp45I GTSAC 3 cut(s) 594, 1084, 1687
TspDTI ATGAA 6 cut(s) 17, 383, 538, 813, 1146, 1437
TspGWI ACGGA 3 cut(s) 1448, 1499, 1614
TspRI CASTG 2 cut(s) 1932, 1946
Tth111I GACNNNGTC 1 cut(s) 1799
VpaK11BI GGWCC 3 cut(s) 971, 1308, 1860
XagI CCTNNNNNAGG 1 cut(s) 589
XapI RAATTY 2 cut(s) 383, 1126
XceI RCATGY 3 cut(s) 796, 1265, 1502
XcmI CCANNNNNNNNNTGG 1 cut(s) 1603
XmnI GAANNNNTTC 2 cut(s) 341, 1642
XspI CTAG 3 cut(s) 84, 839, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.