Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012236

Physical Location & Seq

Genomic Coordinates Forward (+)

44120317 .. 44121211

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0268500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAATCATTGCCTCTAAAAGCATCACGGGACATCTTGAGGTTGATGCACCATACTTACCGCAGTCAGGGATTTCAGTTGTTTGTAAGCTTGTTGGAAATATATGGAGGAAAACTTTTTGATCTCCTCAATGAGAGCAAAAAGCTTTGCATGAGAGAAGATGGTAAGCAACAAGTTTGTATTGTGGGTTTGCAAGAATACAGTGTGTCTGATGTAGAGACAATTAAAGAGCTCATTGAGAAAGGAAGTGCCACAATAAGTACTGGTACCACTGGTGCAAATGAAGAATCCTCTCGCTCACATGTCGTACTTCAGCTTGCTATCAAGAGGGTAGTTGATGGCAATGTATCAAAGCCTCCCCGTCTTGTTGGTAAACTCTCCTTTATAGATCTTGCTGGAAGTGAACGTGGTACAGATACTACAGATAATGACAAACAGACAAGGTTACAGAGAGGGATTAAAAACAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005994 GO:0005995 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006672 GO:0006677 GO:0006687 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009987 GO:0015925 GO:0016042 GO:0016052 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019377 GO:0030149 GO:0034641 GO:0043603 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044262 GO:0044275 GO:0044424 GO:0044464 GO:0046352 GO:0046466 GO:0046477 GO:0046479 GO:0046514 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Melibiase_2

Protein Analysis

157

Amino Acids

17.48

Weight (kDa)

9.12

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	7 - 147	4.6e-34	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26380 AT3G26380
fragaria_vesca	FvH4_4g25930
malus_domestica	MD13G1098300.v1.1 MD13G1098400.v1.1 MD16G1099400.v1.1
prunus_persica	Prupe.1G247000_v2.0.a1
pyrus_communis	pycom13g08600 pycom16g08460
rosa_chinensis	RchiOBHm_Chr4g0433401
rosa_laevigata	RLG00000006756
rosa_multiflora	Rmu_sc0000759.1_g000006
rosa_roxburghii	Rroxscaffold_5G00374950
rosa_rugosa	Rorug04G0268500
rosa_samantha	Rh4AG323300 Rh4BG331000 Rh4CG346300 Rh4DG327400
rosa_wichuraiana	Rw4G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	4 cut(s)	262, 268, 309, 412
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	301
AluBI	AGCT	4 cut(s)	90, 145, 232, 316
AluI	AGCT	4 cut(s)	90, 145, 232, 316
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	212
Asp718I	GGTACC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	2 cut(s)	155, 332
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	388
BmcAI	AGTACT	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	2 cut(s)	32, 36
BpuEI	CTTGAG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	268, 277
Bse3DI	GCAATG	2 cut(s)	8, 349
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	8, 349
BseNI	ACTGG	2 cut(s)	268, 277
BseRI	GAGGAG	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	121, 388
BspACI	CCGC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	8, 349
BsrI	ACTGG	2 cut(s)	268, 277
BssMI	GATC	2 cut(s)	121, 388
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	124, 391
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	121, 388
BstNSI	RCATGY	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	208, 270
Cac8I	GCNNGC	1 cut(s)	318
Csp6I	GTAC	4 cut(s)	261, 267, 308, 411
CviAII	CATG	2 cut(s)	151, 302
CviJI	RGCY	5 cut(s)	90, 145, 232, 316, 355
CviKI_1	RGCY	5 cut(s)	90, 145, 232, 316, 355
CviQI	GTAC	4 cut(s)	261, 267, 308, 411
DpnI	GATC	2 cut(s)	123, 390
DpnII	GATC	2 cut(s)	121, 388
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	2 cut(s)	154, 305
FaiI	YATR	6 cut(s)	54, 103, 105, 152, 303, 386
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	150, 301
FriOI	GRGCYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	154, 305
HindIII	AAGCTT	2 cut(s)	88, 143
HinfI	GANTC	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	374, 404
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	37, 325
Hpy8I	GTNNAC	2 cut(s)	374, 404
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	49, 150, 193, 278
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	154, 305
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	121, 388
LpnPI	CCDG	4 cut(s)	53, 249, 258, 381
LweI	GCATC	2 cut(s)	32, 36
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	2 cut(s)	123, 390
MboI	GATC	2 cut(s)	121, 388
MboII	GAAGA	2 cut(s)	170, 296
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	8 cut(s)	24, 33, 101, 137, 301, 321, 366, 446
MseI	TTAA	3 cut(s)	225, 459, 472
NdeII	GATC	2 cut(s)	121, 388
NlaIII	CATG	2 cut(s)	154, 305
NlaIV	GGNNCC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	305
PciI	ACATGT	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	287
PscI	ACATGT	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	4 cut(s)	262, 268, 309, 412
RsaNI	GTAC	4 cut(s)	261, 267, 308, 411
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	225, 459, 472
Sau3AI	GATC	2 cut(s)	121, 388
ScaI	AGTACT	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	7 cut(s)	44, 92, 147, 234, 318, 409, 446
SfaNI	GCATC	2 cut(s)	32, 36
SfcI	CTRYAG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	409
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	3 cut(s)	225, 459, 472
Tru9I	TTAA	3 cut(s)	225, 459, 472
TscAI	CASTG	2 cut(s)	208, 277
TspDTI	ATGAA	2 cut(s)	17, 297
TspRI	CASTG	2 cut(s)	208, 277
XceI	RCATGY	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.