Rroxscaffold_5G00374950

alpha-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
55864508 .. 55868810
4303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374950.1

Sequence Viewer

Length: 1191 bp
ATGGGGAGGCCTATACCTGACCCAGGTAGGTGGCCTTCCTCCAAAGGTGGGAATGGGTTCACTGAAGTGGCATCAAGAGTACATCAGCTGGGTTTGAAGTTTGGAATTCATCTTATGAGAGGAATTAGTACTCAGGCAGTAAATGCGAATACCCCGATCTTGGATGTCACCAAGGGGACTGCTTATGAAGAGTCTGGAAGAACATGGACTGCAAAAGACATAGGGATCAATGAAAGGCGTTGCGCATGGATGCAAAATGGTTTCATGAGTGTGAATACTACATTGGGTGCTGGGAAGGCCTTCTTAAGATCACTTTATCGACAGTATGACGAGTGGGGTGTTGATTTTGTGAAAAATGATTGTGTGTTTGGTGAAGACATAGATGTAGGTGAAATAACCGTTGTGTCAGAGGTTCTAAAGCAACTTGACCATCCTGTGGTGTATTCTCTCTCTCCTGGAACCCAAGCAACACCTGCGCTGGCCAAAGATGTAACTGGCATAGTCAATATGTACCGTATAACAGGGGATGATTGGGACACATGGGACGATGTTGTAGCCCATTTTGACGTTACCAGGGATTTTGCTGCTGCGAATTTGATAGGAGCTAATGGCTTGCTGGGAAAGTCATGGCCTGACTTAGATATGCTCCCCCTGGGATGGCTTACCGATCCAGGTTCAAATGACGGTCCACACAGACAAACGAAACTCACTTTAGACGAGCAAAGAACTCAGATGACTTTGTGGTCTATTGCCAAGTCTCCTCTCATGTTTGGAGGGGATGTGAGAAAGCTTGATGATGCCACAACTAGTCTCATCACAAATCCTACCTTGCTGAAAATTAATTCGTTTAGCTCCAACAATAAGGAGTTTCCATTGATTTCAAGTACTTCGAGTAAAAGGGACGTCAAGAATGATGATCTGGTTAACACCTGGCAATCAAGAAGACAATTAAAAAGTTTAAAGACTTCAGATTCACATGTTCTTGGTCTCACTAGCTGTGCAGAAGAGAAAGCAATTGGGTGGTCCACTAAAGCTCTTGACCAAGATCTTGAACACATCTGCTGGAAAGAACACTCGAGAAAGAAATACCAGACACCTTTTTGCTTAAACAAGAGAGAATCTCTTTTTGGCATTAGAAGACAACATAATGTACAAACAGCAATACCAGGGGAAGGTCAATTTGTTAGCTAG

Protein Analysis

396

Amino Acids

44.03

Weight (kDa)

6.52

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Melibiase_2 PF16499 108 - 281 5e-12 Alpha galactosidase A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012236)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 481
AasI GACNNNNNNGTC 1 cut(s) 742
AatII GACGTC 1 cut(s) 906
Acc16I TGCGCA 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 436
AclWI GGATC 2 cut(s) 233, 662
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 105, 592
AcuI CTGAAG 2 cut(s) 84, 951
AcyI GRCGYC 1 cut(s) 903
AfaI GTAC 5 cut(s) 81, 130, 512, 886, 1152
AfiI CCNNNNNNNGG 6 cut(s) 23, 48, 160, 436, 657, 1172
AflII CTTAAG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 976
AgsI TTSAA 4 cut(s) 97, 678, 882, 1052
AhlI ACTAGT 1 cut(s) 806
AjnI CCWGG 7 cut(s) 22, 454, 572, 651, 670, 929, 1165
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 1110, 1142
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 7 cut(s) 88, 605, 790, 852, 996, 1034, 1188
AluI AGCT 7 cut(s) 88, 605, 790, 852, 996, 1034, 1188
Alw26I GTCTC 3 cut(s) 762, 815, 992
AlwI GGATC 2 cut(s) 233, 662
Ama87I CYCGRG 1 cut(s) 1075
AoxI GGCC 5 cut(s) 8, 32, 297, 480, 629
ApeKI GCWGC 2 cut(s) 584, 587
ApoI RAATTY 2 cut(s) 105, 592
AseI ATTAAT 1 cut(s) 840
Asp700I GAANNNNTTC 2 cut(s) 56, 299
AspLEI GCGC 2 cut(s) 245, 478
AspS9I GGNCC 2 cut(s) 686, 1023
AsuHPI GGTGA 3 cut(s) 160, 383, 401
AvaI CYCGRG 1 cut(s) 1075
AvaII GGWCC 2 cut(s) 686, 1023
BalI TGGCCA 1 cut(s) 482
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
BbsI GAAGAC 3 cut(s) 381, 949, 1144
BbvI GCAGC 2 cut(s) 571, 574
BccI CCATC 2 cut(s) 438, 651
BciT130I CCWGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
BcoDI GTCTC 3 cut(s) 762, 815, 992
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 3 cut(s) 807, 993, 1189
BfrI CTTAAG 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 481
BglII AGATCT 1 cut(s) 1045
BisI GCNGC 2 cut(s) 585, 588
BlsI GCNGC 2 cut(s) 586, 589
BmcAI AGTACT 2 cut(s) 130, 886
Bme1390I CCNGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
Bme18I GGWCC 2 cut(s) 686, 1023
BmeT110I CYCGRG 1 cut(s) 1075
BmgT120I GGNCC 2 cut(s) 686, 1023
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
BmsI GCATC 3 cut(s) 80, 240, 787
BpiI GAAGAC 3 cut(s) 381, 949, 1144
BplI GAGNNNNNCTC 2 cut(s) 1105, 1137
BsaHI GRCGYC 1 cut(s) 903
BsaI GGTCTC 1 cut(s) 992
BsaJI CCNNGG 6 cut(s) 22, 171, 573, 651, 652, 1166
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 48, 160, 436, 657, 1172
Bse1I ACTGG 1 cut(s) 499
BseBI CCWGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
BseDI CCNNGG 6 cut(s) 22, 171, 573, 651, 652, 1166
BseGI GGATG 6 cut(s) 169, 255, 430, 532, 662, 784
BseLI CCNNNNNNNGG 6 cut(s) 23, 48, 160, 436, 657, 1172
BseMII CTCAG 2 cut(s) 146, 743
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 1 cut(s) 750
BseXI GCAGC 2 cut(s) 571, 574
BseYI CCCAGC 3 cut(s) 88, 290, 616
BsgI GTGCAG 1 cut(s) 1020
BshFI GGCC 5 cut(s) 10, 34, 299, 482, 631
BsiHKCI CYCGRG 1 cut(s) 1075
BslFI GGGAC 4 cut(s) 190, 548, 557, 914
BslI CCNNNNNNNGG 6 cut(s) 23, 48, 160, 436, 657, 1172
BsmAI GTCTC 3 cut(s) 762, 815, 992
BsmFI GGGAC 4 cut(s) 190, 548, 557, 914
BsnI GGCC 5 cut(s) 10, 34, 299, 482, 631
Bso31I GGTCTC 1 cut(s) 992
BsoBI CYCGRG 1 cut(s) 1075
Bsp1407I TGTACA 1 cut(s) 1150
Bsp143I GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
BspANI GGCC 5 cut(s) 10, 34, 299, 482, 631
BspCNI CTCAG 2 cut(s) 145, 742
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 460
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 2 cut(s) 233, 662
BspTI CTTAAG 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 992
BsrGI TGTACA 1 cut(s) 1150
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 6 cut(s) 22, 171, 573, 651, 652, 1166
BssMI GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
BssNI GRCGYC 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
Bst4CI ACNGT 4 cut(s) 324, 400, 515, 686
Bst6I CTCTTC 2 cut(s) 183, 999
BstACI GRCGYC 1 cut(s) 903
BstAFI CTTAAG 1 cut(s) 304
BstAPI GCANNNNNTGC 2 cut(s) 143, 473
BstAUI TGTACA 1 cut(s) 1150
BstC8I GCNNGC 2 cut(s) 480, 614
BstDEI CTNAG 3 cut(s) 132, 637, 729
BstENI CCTNNNNNAGG 1 cut(s) 21
BstF5I GGATG 6 cut(s) 169, 255, 430, 532, 662, 784
BstHHI GCGC 2 cut(s) 245, 478
BstKTI GATC 6 cut(s) 159, 228, 311, 670, 919, 1048
BstMAI GTCTC 3 cut(s) 762, 815, 992
BstMBI GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 143, 296, 473
BstNI CCWGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 7 cut(s) 22, 454, 572, 651, 670, 929, 1165
BstV1I GCAGC 2 cut(s) 571, 574
BstV2I GAAGAC 3 cut(s) 381, 949, 1144
BstX2I RGATCY 1 cut(s) 1045
BstXI CCANNNNNNTGG 1 cut(s) 30
BstYI RGATCY 1 cut(s) 1045
BsuRI GGCC 5 cut(s) 10, 34, 299, 482, 631
BtsCI GGATG 6 cut(s) 169, 255, 430, 532, 662, 784
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 480, 614
CciI TCATGA 1 cut(s) 264
CfoI GCGC 2 cut(s) 245, 478
Cfr13I GGNCC 2 cut(s) 686, 1023
Csp6I GTAC 5 cut(s) 80, 129, 511, 885, 1151
CviAII CATG 7 cut(s) 204, 246, 265, 540, 627, 766, 977
CviQI GTAC 5 cut(s) 80, 129, 511, 885, 1151
DdeI CTNAG 3 cut(s) 132, 637, 729
DpnI GATC 6 cut(s) 158, 227, 310, 669, 918, 1047
DpnII GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
DraI TTTAAA 1 cut(s) 960
DrdI GACNNNNNNGTC 1 cut(s) 742
DseDI GACNNNNNNGTC 1 cut(s) 742
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 183, 999
EarI CTCTTC 2 cut(s) 183, 999
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 2 cut(s) 10, 299
Eco31I GGTCTC 1 cut(s) 992
Eco47I GGWCC 2 cut(s) 686, 1023
Eco57I CTGAAG 2 cut(s) 84, 951
Eco88I CYCGRG 1 cut(s) 1075
EcoNI CCTNNNNNAGG 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 105
EcoRII CCWGG 7 cut(s) 22, 454, 572, 651, 670, 929, 1165
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 7 cut(s) 207, 249, 268, 543, 630, 769, 980
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 4 cut(s) 190, 548, 557, 914
FatI CATG 7 cut(s) 203, 245, 264, 539, 626, 765, 976
Fnu4HI GCNGC 2 cut(s) 585, 588
FokI GGATG 6 cut(s) 176, 262, 417, 539, 669, 791
Fsp4HI GCNGC 2 cut(s) 585, 588
FspBI CTAG 3 cut(s) 807, 993, 1189
FspI TGCGCA 1 cut(s) 244
GlaI GCGC 2 cut(s) 244, 477
GluI GCNGC 2 cut(s) 585, 588
GsaI CCCAGC 3 cut(s) 92, 294, 620
HaeIII GGCC 5 cut(s) 10, 34, 299, 482, 631
HhaI GCGC 2 cut(s) 245, 478
Hin1I GRCGYC 1 cut(s) 903
Hin1II CATG 7 cut(s) 207, 249, 268, 543, 630, 769, 980
Hin6I GCGC 2 cut(s) 243, 476
HinP1I GCGC 2 cut(s) 243, 476
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 3 cut(s) 191, 971, 1118
HpaI GTTAAC 1 cut(s) 925
HphI GGTGA 3 cut(s) 160, 383, 401
Hpy166II GTNNAC 4 cut(s) 60, 689, 925, 1026
Hpy188I TCNGA 3 cut(s) 409, 732, 970
Hpy188III TCNNGA 8 cut(s) 75, 195, 265, 907, 939, 1037, 1049, 1077
Hpy8I GTNNAC 4 cut(s) 60, 689, 925, 1026
HpyAV CCTTC 4 cut(s) 45, 289, 310, 1166
HpyCH4III ACNGT 4 cut(s) 324, 400, 515, 686
HpyCH4IV ACGT 2 cut(s) 567, 903
HpyCH4V TGCA 3 cut(s) 212, 253, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 296, 473
HpyF3I CTNAG 3 cut(s) 132, 637, 729
HpySE526I ACGT 2 cut(s) 567, 903
Hsp92I GRCGYC 1 cut(s) 903
Hsp92II CATG 7 cut(s) 207, 249, 268, 543, 630, 769, 980
HspAI GCGC 2 cut(s) 243, 476
KspAI GTTAAC 1 cut(s) 925
Kzo9I GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
LmnI GCTCC 3 cut(s) 602, 651, 857
Lsp1109I GCAGC 2 cut(s) 571, 574
LweI GCATC 3 cut(s) 80, 240, 787
MaeI CTAG 3 cut(s) 807, 993, 1189
MaeII ACGT 2 cut(s) 567, 903
MaeIII GTNAC 3 cut(s) 166, 490, 568
MalI GATC 6 cut(s) 158, 227, 310, 669, 918, 1047
MboI GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
MboII GAAGA 6 cut(s) 200, 210, 386, 954, 1016, 1149
MfeI CAATTG 1 cut(s) 1014
MflI RGATCY 1 cut(s) 1045
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 8 cut(s) 105, 123, 592, 837, 841, 947, 1014, 1178
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 879
MnlI CCTC 5 cut(s) 49, 113, 403, 767, 771
Mox20I TGGCCA 1 cut(s) 482
MroXI GAANNNNTTC 2 cut(s) 56, 299
MscI TGGCCA 1 cut(s) 482
MseI TTAA 6 cut(s) 305, 840, 924, 950, 959, 1106
MslI CAYNNNNRTG 2 cut(s) 65, 269
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 88
MspCI CTTAAG 1 cut(s) 304
MspR9I CCNGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
MunI CAATTG 1 cut(s) 1014
MvaI CCWGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
MwoI GCNNNNNNNGC 3 cut(s) 143, 296, 473
NdeII GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
NlaIII CATG 7 cut(s) 207, 249, 268, 543, 630, 769, 980
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 1 cut(s) 166
NsbI TGCGCA 1 cut(s) 244
NspI RCATGY 1 cut(s) 980
OliI CACNNNNGTG 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 1075
PagI TCATGA 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 481
PasI CCCWGGG 1 cut(s) 652
PceI AGGCCT 2 cut(s) 10, 299
PciI ACATGT 1 cut(s) 976
PdmI GAANNNNTTC 2 cut(s) 56, 299
PfeI GAWTC 2 cut(s) 971, 1118
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 454
PkrI GCNGC 2 cut(s) 586, 589
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PscI ACATGT 1 cut(s) 976
PshBI ATTAAT 1 cut(s) 840
Psp6I CCWGG 7 cut(s) 22, 454, 572, 651, 670, 929, 1165
PspFI CCCAGC 3 cut(s) 88, 290, 616
PspGI CCWGG 7 cut(s) 22, 454, 572, 651, 670, 929, 1165
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 2 cut(s) 686, 1023
PsuI RGATCY 1 cut(s) 1045
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 5 cut(s) 81, 130, 512, 886, 1152
RsaNI GTAC 5 cut(s) 80, 129, 511, 885, 1151
RseI CAYNNNNRTG 2 cut(s) 65, 269
SaqAI TTAA 6 cut(s) 305, 840, 924, 950, 959, 1106
SatI GCNGC 2 cut(s) 585, 588
Sau3AI GATC 6 cut(s) 156, 225, 308, 667, 916, 1045
Sau96I GGNCC 2 cut(s) 686, 1023
ScaI AGTACT 2 cut(s) 130, 886
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 7 cut(s) 24, 456, 574, 653, 672, 931, 1167
SfaNI GCATC 3 cut(s) 80, 240, 787
Sfr274I CTCGAG 1 cut(s) 1075
SinI GGWCC 2 cut(s) 686, 1023
SlaI CTCGAG 1 cut(s) 1075
SmiMI CAYNNNNRTG 2 cut(s) 65, 269
SmlI CTYRAG 2 cut(s) 304, 1075
SmoI CTYRAG 2 cut(s) 304, 1075
SpeI ACTAGT 1 cut(s) 806
Sse9I AATT 8 cut(s) 105, 123, 592, 837, 841, 947, 1014, 1178
SseBI AGGCCT 2 cut(s) 10, 299
SspMI CTAG 3 cut(s) 807, 993, 1189
StuI AGGCCT 2 cut(s) 10, 299
StyD4I CCNGG 7 cut(s) 22, 454, 572, 651, 670, 929, 1165
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 4 cut(s) 324, 400, 515, 686
TaiI ACGT 2 cut(s) 570, 906
TaqI TCGA 3 cut(s) 319, 890, 1076
TasI AATT 8 cut(s) 105, 123, 592, 837, 841, 947, 1014, 1178
TatI WGTACW 4 cut(s) 79, 128, 884, 1150
TfiI GAWTC 2 cut(s) 971, 1118
Tru1I TTAA 6 cut(s) 305, 840, 924, 950, 959, 1106
Tru9I TTAA 6 cut(s) 305, 840, 924, 950, 959, 1106
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 584, 587
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 98, 201, 246, 253
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 686, 1023
VspI ATTAAT 1 cut(s) 840
XagI CCTNNNNNAGG 1 cut(s) 21
XapI RAATTY 2 cut(s) 105, 592
XceI RCATGY 1 cut(s) 980
XhoI CTCGAG 1 cut(s) 1075
XmnI GAANNNNTTC 2 cut(s) 56, 299
XspI CTAG 3 cut(s) 807, 993, 1189
ZraI GACGTC 1 cut(s) 904
ZrmI AGTACT 2 cut(s) 130, 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.