Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008463

Physical Location & Seq

Genomic Coordinates Forward (+)

18381138 .. 18381974

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1202000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGAGAAGCTCTGGCCCCTCAAAGCACCGACTCAATTCTAAATTCTAAGTACGAGAATTGTGGTGAGTTCTTTGCTATGAAAGCTTCCACTGTTGATTTCAATAACTGGATAGCCGAAGCATTAGACTCCATGAACAAGTTGGCACTTGATATGCCTGGTCAGCATGTTATAAAACATAATAAATCGTCTCAAACAGAAGCAAAGGCAGAACCAGAAACTAAAGTTGCAGCCAGCCAATCCAATGGACAATGTGAAAAAGTTGAAACATCTGAATCTGTAAGCTGTTATTTTGAAACACAAGAAAATATGAGAAGGTCCAGCACTGAATCAGATGCTGATAACCTGGATGTTTGTGCTCAGATACAAAAATCTCCAAGCTTTAGCGTTGACCTCCAAAATGAAGCGAGAACTGAAGAATCAGATTCTACCCCTTTGCTGTACCATGTCAAGGCTGCAATAGAAGGCTCAACAAGCCAAGGTGATGATGTTACTCTTGGAAGCTTTATCGAGTACACTGGATATGATCAAGAGGTTTCACAGTACCAAGCAATGCTGGTGGAAGGGAAAGTCATCGCATTAGAAGCAAGTAACTCACAGAAGTCAAATACTCCATTCATAGGATTCTTGAAGGAAGAGGAAGAAGCACGTACCGTTGTTACACCACAAGAAGATGATAAGCATTCGACTGCTGAAAATTCAACCAAGAATCTATTGGACTCACGTACAAAAGAAGCTGCTAGGGCTCCAACTACTTCATCAAAAGGTAAAGCGAAGCGCAGGCAGCGGTCTTCGCTCTTTACCAACTGCATGTGTTGTGCAACTGTGATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

30.51

Weight (kDa)

4.78

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14650
fragaria_vesca	FvH4_4g01740 FvH4_4g01740 FvH4_4g01740 FvH4_4g01740 FvH4_4g01740
malus_domestica	MD13G1201700.v1.1 MD16G1201900.v1.1 MD16G1202000.v1.1
prunus_persica	Prupe.1G023500_v2.0.a1 Prupe.1G023500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0388601
rosa_laevigata	RLG00000010035
rosa_multiflora	Rmu_sc0004459.1_g000015
rosa_roxburghii	Rroxscaffold_5G00335060
rosa_rugosa	Rorug03G0319200 Rorug03G0319200
rosa_samantha	Rh4AG023600 Rh4BG016800 Rh4CG026300 Rh4DG017600
rosa_wichuraiana	Rw0G009360 Rw4G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AciI	CCGC	1 cut(s)	787
AcsI	RAATTY	2 cut(s)	43, 697
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	6 cut(s)	53, 443, 515, 545, 652, 727
AfiI	CCNNNNNNNGG	2 cut(s)	451, 620
AgsI	TTSAA	5 cut(s)	103, 266, 296, 631, 702
AjnI	CCWGG	2 cut(s)	157, 345
AluBI	AGCT	6 cut(s)	11, 86, 285, 381, 504, 737
AluI	AGCT	6 cut(s)	11, 86, 285, 381, 504, 737
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	230, 455, 737, 784
ApoI	RAATTY	2 cut(s)	43, 697
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	2 cut(s)	16, 318
AsuHPI	GGTGA	2 cut(s)	77, 494
AvaII	GGWCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	242, 442, 724, 796
BciT130I	CCWGG	2 cut(s)	159, 347
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	741
BisI	GCNGC	4 cut(s)	231, 456, 738, 785
BlsI	GCNGC	4 cut(s)	232, 457, 739, 786
Bme1390I	CCNGG	2 cut(s)	159, 347
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	16, 318
BmiI	GGNNCC	2 cut(s)	18, 747
BmrFI	CCNGG	2 cut(s)	159, 347
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	783
BsaAI	YACGTR	2 cut(s)	650, 725
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 620
Bse1I	ACTGG	2 cut(s)	113, 523
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	159, 347
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	451, 620
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	113, 523
BseXI	GCAGC	4 cut(s)	242, 442, 724, 796
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	451, 620
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	361, 748
Bsp143I	GATC	1 cut(s)	526
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	18, 747
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	113, 523
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	1 cut(s)	526
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	159, 347
Bst4CI	ACNGT	4 cut(s)	94, 543, 655, 826
Bst6I	CTCTTC	1 cut(s)	630
BstBAI	YACGTR	2 cut(s)	650, 725
BstC8I	GCNNGC	2 cut(s)	235, 782
BstDEI	CTNAG	2 cut(s)	48, 360
BstF5I	GGATG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 163, 474, 584, 743, 784, 793
BstNI	CCWGG	2 cut(s)	159, 347
BstNSI	RCATGY	2 cut(s)	170, 814
BstSCI	CCNGG	2 cut(s)	157, 345
BstV1I	GCAGC	4 cut(s)	242, 442, 724, 796
BstV2I	GAAGAC	1 cut(s)	783
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	3 cut(s)	90, 324, 516
Cac8I	GCNNGC	2 cut(s)	235, 782
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	16, 318
Csp6I	GTAC	6 cut(s)	52, 442, 514, 544, 651, 726
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	4 cut(s)	133, 167, 446, 811
CviQI	GTAC	6 cut(s)	52, 442, 514, 544, 651, 726
DdeI	CTNAG	2 cut(s)	48, 360
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	157, 345
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	4 cut(s)	136, 170, 449, 814
FatI	CATG	4 cut(s)	132, 166, 445, 810
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	4 cut(s)	231, 456, 738, 785
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	4 cut(s)	231, 456, 738, 785
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	4 cut(s)	231, 456, 738, 785
HaeIII	GGCC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	136, 170, 449, 814
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	3 cut(s)	84, 379, 502
HinfI	GANTC	9 cut(s)	32, 128, 275, 329, 419, 425, 624, 709, 719
HphI	GGTGA	2 cut(s)	77, 494
Hpy166II	GTNNAC	2 cut(s)	391, 516
Hpy188I	TCNGA	4 cut(s)	274, 334, 363, 424
Hpy188III	TCNNGA	2 cut(s)	530, 628
Hpy8I	GTNNAC	2 cut(s)	391, 516
HpyAV	CCTTC	4 cut(s)	309, 458, 557, 625
HpyCH4III	ACNGT	4 cut(s)	94, 543, 655, 826
HpyCH4IV	ACGT	2 cut(s)	649, 724
HpyCH4V	TGCA	4 cut(s)	230, 458, 810, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 163, 474, 584, 743, 784, 793
HpyF3I	CTNAG	2 cut(s)	48, 360
HpySE526I	ACGT	2 cut(s)	649, 724
Hsp92II	CATG	4 cut(s)	136, 170, 449, 814
HspAI	GCGC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	4 cut(s)	242, 442, 724, 796
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	2 cut(s)	649, 724
MaeIII	GTNAC	3 cut(s)	490, 590, 658
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	5 cut(s)	428, 647, 653, 683, 783
MhlI	GDGCHC	2 cut(s)	361, 748
MluCI	AATT	4 cut(s)	36, 43, 58, 697
MlyI	GAGTC	3 cut(s)	26, 122, 713
MmeI	TCCRAC	1 cut(s)	773
MnlI	CCTC	4 cut(s)	30, 404, 526, 631
MseI	TTAA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	787
MspR9I	CCNGG	2 cut(s)	159, 347
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	159, 347
MwoI	GCNNNNNNNGC	7 cut(s)	83, 163, 474, 584, 743, 784, 793
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	4 cut(s)	136, 170, 449, 814
NlaIV	GGNNCC	2 cut(s)	18, 747
NspI	RCATGY	2 cut(s)	170, 814
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	6 cut(s)	275, 329, 419, 425, 624, 709
PkrI	GCNGC	4 cut(s)	232, 457, 739, 786
PleI	GAGTC	3 cut(s)	26, 122, 713
PpsI	GAGTC	3 cut(s)	26, 122, 713
Ppu21I	YACGTR	2 cut(s)	650, 725
PsiI	TTATAA	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	157, 345
PspGI	CCWGG	2 cut(s)	157, 345
PspN4I	GGNNCC	2 cut(s)	18, 747
PspPI	GGNCC	2 cut(s)	16, 318
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	6 cut(s)	53, 443, 515, 545, 652, 727
RsaNI	GTAC	6 cut(s)	52, 442, 514, 544, 651, 726
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	4 cut(s)	231, 456, 738, 785
Sau3AI	GATC	1 cut(s)	526
Sau96I	GGNCC	2 cut(s)	16, 318
SchI	GAGTC	3 cut(s)	26, 122, 713
ScrFI	CCNGG	2 cut(s)	159, 347
SduI	GDGCHC	2 cut(s)	361, 748
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	318
Sse9I	AATT	4 cut(s)	36, 43, 58, 697
SsiI	CCGC	1 cut(s)	787
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	2 cut(s)	157, 345
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	4 cut(s)	94, 543, 655, 826
TaiI	ACGT	2 cut(s)	652, 727
TaqI	TCGA	2 cut(s)	510, 686
TasI	AATT	4 cut(s)	36, 43, 58, 697
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	6 cut(s)	275, 329, 419, 425, 624, 709
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	3 cut(s)	97, 331, 523
TseI	GCWGC	4 cut(s)	230, 455, 737, 784
TspDTI	ATGAA	5 cut(s)	95, 149, 417, 607, 747
TspRI	CASTG	3 cut(s)	97, 331, 523
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	2 cut(s)	43, 697
XceI	RCATGY	2 cut(s)	170, 814
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 712
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.