No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14650 |
| fragaria_vesca | FvH4_4g01740 FvH4_4g01740 FvH4_4g01740 FvH4_4g01740 FvH4_4g01740 |
| malus_domestica | MD13G1201700.v1.1 MD16G1201900.v1.1 MD16G1202000.v1.1 |
| prunus_persica | Prupe.1G023500_v2.0.a1 Prupe.1G023500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0388601 |
| rosa_laevigata | RLG00000010035 |
| rosa_multiflora | Rmu_sc0004459.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00335060 |
| rosa_rugosa | Rorug03G0319200 Rorug03G0319200 |
| rosa_samantha | Rh4AG023600 Rh4BG016800 Rh4CG026300 Rh4DG017600 |
| rosa_wichuraiana | Rw0G009360 Rw4G001680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 859 |
| AccIII | TCCGGA | 1 cut(s) | 1597 |
| AclWI | GGATC | 3 cut(s) | 482, 588, 1589 |
| AcsI | RAATTY | 3 cut(s) | 685, 1330, 1882 |
| AcuI | CTGAAG | 5 cut(s) | 60, 569, 1410, 1630, 1698 |
| AfaI | GTAC | 1 cut(s) | 484 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 520, 1036, 1802 |
| AgeI | ACCGGT | 1 cut(s) | 118 |
| AjnI | CCWGG | 2 cut(s) | 373, 1059 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 391, 423 |
| AluBI | AGCT | 9 cut(s) | 284, 670, 699, 1380, 1388, 1421, 1644, 1731, 1922 |
| AluI | AGCT | 9 cut(s) | 284, 670, 699, 1380, 1388, 1421, 1644, 1731, 1922 |
| Alw21I | GWGCWC | 1 cut(s) | 1586 |
| Alw26I | GTCTC | 4 cut(s) | 440, 1025, 1277, 1405 |
| AlwI | GGATC | 3 cut(s) | 482, 588, 1589 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 884, 1913 |
| Ama87I | CYCGRG | 1 cut(s) | 1639 |
| Aor13HI | TCCGGA | 1 cut(s) | 1597 |
| AoxI | GGCC | 1 cut(s) | 531 |
| ApeKI | GCWGC | 5 cut(s) | 1475, 1478, 1481, 1484, 1922 |
| ApoI | RAATTY | 3 cut(s) | 685, 1330, 1882 |
| AsiGI | ACCGGT | 1 cut(s) | 118 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 720, 1105 |
| AspLEI | GCGC | 2 cut(s) | 1096, 1956 |
| AspS9I | GGNCC | 3 cut(s) | 395, 1048, 1569 |
| AsuC2I | CCSGG | 1 cut(s) | 1964 |
| AsuHPI | GGTGA | 8 cut(s) | 68, 119, 440, 598, 694, 1101, 1349, 1757 |
| AvaI | CYCGRG | 1 cut(s) | 1639 |
| AvaII | GGWCC | 3 cut(s) | 395, 1048, 1569 |
| AxyI | CCTNAGG | 1 cut(s) | 759 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 27, 60 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| Bbv12I | GWGCWC | 1 cut(s) | 1586 |
| BbvI | GCAGC | 5 cut(s) | 1487, 1490, 1493, 1496, 1909 |
| BccI | CCATC | 4 cut(s) | 216, 245, 498, 865 |
| BciT130I | CCWGG | 2 cut(s) | 375, 1061 |
| BclI | TGATCA | 2 cut(s) | 966, 2004 |
| BcnI | CCSGG | 1 cut(s) | 1964 |
| BcoDI | GTCTC | 4 cut(s) | 440, 1025, 1277, 1405 |
| BfaI | CTAG | 8 cut(s) | 278, 392, 584, 725, 855, 1007, 1553, 1802 |
| BfmI | CTRYAG | 3 cut(s) | 285, 348, 860 |
| BfoI | RGCGCY | 1 cut(s) | 1097 |
| BisI | GCNGC | 5 cut(s) | 1476, 1479, 1482, 1485, 1923 |
| BlpI | GCTNAGC | 1 cut(s) | 1732 |
| BlsI | GCNGC | 5 cut(s) | 1477, 1480, 1483, 1486, 1924 |
| Bme1390I | CCNGG | 3 cut(s) | 375, 1061, 1964 |
| Bme18I | GGWCC | 3 cut(s) | 395, 1048, 1569 |
| BmeT110I | CYCGRG | 1 cut(s) | 1639 |
| BmgT120I | GGNCC | 3 cut(s) | 395, 1048, 1569 |
| BmiI | GGNNCC | 2 cut(s) | 153, 1197 |
| BmrFI | CCNGG | 3 cut(s) | 375, 1061, 1964 |
| BmsI | GCATC | 5 cut(s) | 275, 499, 635, 1305, 1416 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 721, 753, 1853, 1885 |
| BpmI | CTGGAG | 2 cut(s) | 542, 1239 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1732 |
| BpuEI | CTTGAG | 1 cut(s) | 1100 |
| BpuMI | CCSGG | 1 cut(s) | 1964 |
| BsaJI | CCNNGG | 1 cut(s) | 374 |
| BsaWI | WCCGGW | 2 cut(s) | 118, 1597 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 520, 1036, 1802 |
| Bse118I | RCCGGY | 1 cut(s) | 118 |
| Bse1I | ACTGG | 5 cut(s) | 484, 525, 1051, 1209, 1918 |
| Bse21I | CCTNAGG | 1 cut(s) | 759 |
| BseAI | TCCGGA | 1 cut(s) | 1597 |
| BseBI | CCWGG | 2 cut(s) | 375, 1061 |
| BseDI | CCNNGG | 1 cut(s) | 374 |
| BseGI | GGATG | 5 cut(s) | 46, 247, 514, 876, 1003 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 520, 1036, 1802 |
| BseMII | CTCAG | 7 cut(s) | 435, 570, 669, 1035, 1413, 1746, 1920 |
| BseNI | ACTGG | 5 cut(s) | 484, 525, 1051, 1209, 1918 |
| BseRI | GAGGAG | 2 cut(s) | 164, 1796 |
| BseXI | GCAGC | 5 cut(s) | 1487, 1490, 1493, 1496, 1909 |
| BshFI | GGCC | 1 cut(s) | 533 |
| BshTI | ACCGGT | 1 cut(s) | 118 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1586 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1639 |
| BsiSI | CCGG | 3 cut(s) | 119, 1598, 1963 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 520, 1036, 1802 |
| BsmAI | GTCTC | 4 cut(s) | 440, 1025, 1277, 1405 |
| BsmBI | CGTCTC | 2 cut(s) | 440, 1025 |
| BsnI | GGCC | 1 cut(s) | 533 |
| BsoBI | CYCGRG | 1 cut(s) | 1639 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1586 |
| Bsp13I | TCCGGA | 1 cut(s) | 1597 |
| Bsp143I | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1732 |
| BspANI | GGCC | 1 cut(s) | 533 |
| BspCNI | CTCAG | 7 cut(s) | 436, 569, 670, 1036, 1414, 1745, 1919 |
| BspEI | TCCGGA | 1 cut(s) | 1597 |
| BspLI | GGNNCC | 2 cut(s) | 153, 1197 |
| BspPI | GGATC | 3 cut(s) | 482, 588, 1589 |
| BspQI | GCTCTTC | 1 cut(s) | 555 |
| BsrFI | RCCGGY | 1 cut(s) | 118 |
| BsrI | ACTGG | 5 cut(s) | 484, 525, 1051, 1209, 1918 |
| BssAI | RCCGGY | 1 cut(s) | 118 |
| BssECI | CCNNGG | 1 cut(s) | 374 |
| BssMI | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| Bst2UI | CCWGG | 2 cut(s) | 375, 1061 |
| Bst6I | CTCTTC | 5 cut(s) | 555, 941, 1140, 1157, 1812 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 272 |
| BstF5I | GGATG | 5 cut(s) | 46, 247, 514, 876, 1003 |
| BstH2I | RGCGCY | 1 cut(s) | 1097 |
| BstHHI | GCGC | 2 cut(s) | 1096, 1956 |
| BstKTI | GATC | 7 cut(s) | 490, 583, 637, 969, 1597, 1657, 2007 |
| BstMAI | GTCTC | 4 cut(s) | 440, 1025, 1277, 1405 |
| BstMBI | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 160, 272, 281, 1435, 1475, 1481, 1484, 1581 |
| BstNI | CCWGG | 2 cut(s) | 375, 1061 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstSCI | CCNGG | 3 cut(s) | 373, 1059, 1962 |
| BstSFI | CTRYAG | 3 cut(s) | 285, 348, 860 |
| BstV1I | GCAGC | 5 cut(s) | 1487, 1490, 1493, 1496, 1909 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BstX2I | RGATCY | 1 cut(s) | 580 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1216 |
| BstYI | RGATCY | 1 cut(s) | 580 |
| Bsu36I | CCTNAGG | 1 cut(s) | 759 |
| BsuRI | GGCC | 1 cut(s) | 533 |
| BtsCI | GGATG | 5 cut(s) | 46, 247, 514, 876, 1003 |
| BtsIMutI | CAGTG | 6 cut(s) | 441, 518, 1058, 1216, 1584, 1584 |
| CaiI | CAGNNNCTG | 2 cut(s) | 884, 1913 |
| CfoI | GCGC | 2 cut(s) | 1096, 1956 |
| Cfr10I | RCCGGY | 1 cut(s) | 118 |
| Cfr13I | GGNCC | 3 cut(s) | 395, 1048, 1569 |
| CseI | GACGC | 1 cut(s) | 1007 |
| Csp6I | GTAC | 1 cut(s) | 483 |
| CspAI | ACCGGT | 1 cut(s) | 118 |
| CviQI | GTAC | 1 cut(s) | 483 |
| DpnI | GATC | 7 cut(s) | 489, 582, 636, 968, 1596, 1656, 2006 |
| DpnII | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| Eam1104I | CTCTTC | 5 cut(s) | 555, 941, 1140, 1157, 1812 |
| EarI | CTCTTC | 5 cut(s) | 555, 941, 1140, 1157, 1812 |
| Eco147I | AGGCCT | 1 cut(s) | 533 |
| Eco47I | GGWCC | 3 cut(s) | 395, 1048, 1569 |
| Eco57I | CTGAAG | 5 cut(s) | 60, 569, 1410, 1630, 1698 |
| Eco81I | CCTNAGG | 1 cut(s) | 759 |
| Eco88I | CYCGRG | 1 cut(s) | 1639 |
| EcoRI | GAATTC | 2 cut(s) | 1330, 1882 |
| EcoRII | CCWGG | 2 cut(s) | 373, 1059 |
| EcoT22I | ATGCAT | 1 cut(s) | 773 |
| Esp3I | CGTCTC | 2 cut(s) | 440, 1025 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 391, 423 |
| FauNDI | CATATG | 1 cut(s) | 631 |
| FbaI | TGATCA | 2 cut(s) | 966, 2004 |
| FblI | GTMKAC | 1 cut(s) | 859 |
| Fnu4HI | GCNGC | 5 cut(s) | 1476, 1479, 1482, 1485, 1923 |
| FokI | GGATG | 5 cut(s) | 33, 254, 521, 883, 1010 |
| Fsp4HI | GCNGC | 5 cut(s) | 1476, 1479, 1482, 1485, 1923 |
| FspBI | CTAG | 8 cut(s) | 278, 392, 584, 725, 855, 1007, 1553, 1802 |
| GlaI | GCGC | 2 cut(s) | 1095, 1955 |
| GluI | GCNGC | 5 cut(s) | 1476, 1479, 1482, 1485, 1923 |
| GsuI | CTGGAG | 2 cut(s) | 542, 1239 |
| HaeII | RGCGCY | 1 cut(s) | 1097 |
| HaeIII | GGCC | 1 cut(s) | 533 |
| HapII | CCGG | 3 cut(s) | 119, 1598, 1963 |
| HgaI | GACGC | 1 cut(s) | 1007 |
| HhaI | GCGC | 2 cut(s) | 1096, 1956 |
| Hin6I | GCGC | 2 cut(s) | 1094, 1954 |
| HinP1I | GCGC | 2 cut(s) | 1094, 1954 |
| HincII | GTYRAC | 1 cut(s) | 1119 |
| HindII | GTYRAC | 1 cut(s) | 1119 |
| HpaI | GTTAAC | 1 cut(s) | 1119 |
| HpaII | CCGG | 3 cut(s) | 119, 1598, 1963 |
| HphI | GGTGA | 8 cut(s) | 68, 119, 440, 598, 694, 1101, 1349, 1757 |
| Hpy166II | GTNNAC | 4 cut(s) | 59, 860, 1119, 1618 |
| Hpy188III | TCNNGA | 9 cut(s) | 141, 212, 278, 584, 1175, 1256, 1598, 1709, 1810 |
| Hpy8I | GTNNAC | 4 cut(s) | 59, 860, 1119, 1618 |
| HpyAV | CCTTC | 6 cut(s) | 166, 533, 1223, 1560, 1807, 1884 |
| HpyCH4IV | ACGT | 1 cut(s) | 449 |
| HpyCH4V | TGCA | 7 cut(s) | 115, 202, 266, 660, 771, 1847, 1997 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 160, 272, 281, 1435, 1475, 1481, 1484, 1581 |
| HpySE526I | ACGT | 1 cut(s) | 449 |
| HspAI | GCGC | 2 cut(s) | 1094, 1954 |
| Kpn2I | TCCGGA | 1 cut(s) | 1597 |
| Ksp22I | TGATCA | 2 cut(s) | 966, 2004 |
| KspAI | GTTAAC | 1 cut(s) | 1119 |
| Kzo9I | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| LguI | GCTCTTC | 1 cut(s) | 555 |
| LmnI | GCTCC | 4 cut(s) | 151, 523, 667, 1930 |
| Lsp1109I | GCAGC | 5 cut(s) | 1487, 1490, 1493, 1496, 1909 |
| LweI | GCATC | 5 cut(s) | 275, 499, 635, 1305, 1416 |
| MaeI | CTAG | 8 cut(s) | 278, 392, 584, 725, 855, 1007, 1553, 1802 |
| MaeII | ACGT | 1 cut(s) | 449 |
| MaeIII | GTNAC | 9 cut(s) | 70, 121, 325, 516, 731, 890, 1441, 1901, 1909 |
| MalI | GATC | 7 cut(s) | 489, 582, 636, 968, 1596, 1656, 2006 |
| MboI | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| MfeI | CAATTG | 1 cut(s) | 2008 |
| MflI | RGATCY | 1 cut(s) | 580 |
| MhlI | GDGCHC | 1 cut(s) | 1586 |
| MlyI | GAGTC | 5 cut(s) | 314, 1298, 1784, 1793, 1898 |
| MmeI | TCCRAC | 7 cut(s) | 337, 698, 792, 874, 1385, 1952, 2004 |
| Mph1103I | ATGCAT | 1 cut(s) | 773 |
| MroI | TCCGGA | 1 cut(s) | 1597 |
| MroXI | GAANNNNTTC | 2 cut(s) | 720, 1105 |
| MseI | TTAA | 4 cut(s) | 689, 780, 977, 1118 |
| MspI | CCGG | 3 cut(s) | 119, 1598, 1963 |
| MspR9I | CCNGG | 3 cut(s) | 375, 1061, 1964 |
| MunI | CAATTG | 1 cut(s) | 2008 |
| MvaI | CCWGG | 2 cut(s) | 375, 1061 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 160, 272, 281, 1435, 1475, 1481, 1484, 1581 |
| NciI | CCSGG | 1 cut(s) | 1964 |
| NdeI | CATATG | 1 cut(s) | 631 |
| NdeII | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| NlaIV | GGNNCC | 2 cut(s) | 153, 1197 |
| NmuCI | GTSAC | 3 cut(s) | 516, 890, 1901 |
| NsiI | ATGCAT | 1 cut(s) | 773 |
| NspI | RCATGY | 1 cut(s) | 275 |
| PceI | AGGCCT | 1 cut(s) | 533 |
| PciSI | GCTCTTC | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 2 cut(s) | 720, 1105 |
| PinAI | ACCGGT | 1 cut(s) | 118 |
| PkrI | GCNGC | 5 cut(s) | 1477, 1480, 1483, 1486, 1924 |
| PleI | GAGTC | 5 cut(s) | 313, 1298, 1783, 1792, 1898 |
| PpsI | GAGTC | 5 cut(s) | 313, 1298, 1783, 1792, 1898 |
| Psp6I | CCWGG | 2 cut(s) | 373, 1059 |
| PspGI | CCWGG | 2 cut(s) | 373, 1059 |
| PspN4I | GGNNCC | 2 cut(s) | 153, 1197 |
| PspPI | GGNCC | 3 cut(s) | 395, 1048, 1569 |
| PstNI | CAGNNNCTG | 2 cut(s) | 884, 1913 |
| PsuI | RGATCY | 1 cut(s) | 580 |
| RsaI | GTAC | 1 cut(s) | 484 |
| RsaNI | GTAC | 1 cut(s) | 483 |
| SapI | GCTCTTC | 1 cut(s) | 555 |
| SaqAI | TTAA | 4 cut(s) | 689, 780, 977, 1118 |
| SatI | GCNGC | 5 cut(s) | 1476, 1479, 1482, 1485, 1923 |
| Sau3AI | GATC | 7 cut(s) | 487, 580, 634, 966, 1594, 1654, 2004 |
| Sau96I | GGNCC | 3 cut(s) | 395, 1048, 1569 |
| SchI | GAGTC | 5 cut(s) | 314, 1298, 1784, 1793, 1898 |
| ScrFI | CCNGG | 3 cut(s) | 375, 1061, 1964 |
| SduI | GDGCHC | 1 cut(s) | 1586 |
| SfaNI | GCATC | 5 cut(s) | 275, 499, 635, 1305, 1416 |
| SfcI | CTRYAG | 3 cut(s) | 285, 348, 860 |
| SinI | GGWCC | 3 cut(s) | 395, 1048, 1569 |
| SmlI | CTYRAG | 1 cut(s) | 1079 |
| SmoI | CTYRAG | 1 cut(s) | 1079 |
| SseBI | AGGCCT | 1 cut(s) | 533 |
| SspI | AATATT | 1 cut(s) | 1612 |
| SspMI | CTAG | 8 cut(s) | 278, 392, 584, 725, 855, 1007, 1553, 1802 |
| StuI | AGGCCT | 1 cut(s) | 533 |
| StyD4I | CCNGG | 3 cut(s) | 373, 1059, 1962 |
| TaiI | ACGT | 1 cut(s) | 452 |
| TaqI | TCGA | 2 cut(s) | 83, 131 |
| Tru1I | TTAA | 4 cut(s) | 689, 780, 977, 1118 |
| Tru9I | TTAA | 4 cut(s) | 689, 780, 977, 1118 |
| TscAI | CASTG | 6 cut(s) | 448, 525, 1058, 1216, 1584, 1591 |
| TseFI | GTSAC | 3 cut(s) | 516, 890, 1901 |
| TseI | GCWGC | 5 cut(s) | 1475, 1478, 1481, 1484, 1922 |
| Tsp45I | GTSAC | 3 cut(s) | 516, 890, 1901 |
| TspDTI | ATGAA | 8 cut(s) | 17, 35, 102, 323, 1421, 1470, 1680, 1923 |
| TspRI | CASTG | 6 cut(s) | 448, 525, 1058, 1216, 1584, 1591 |
| VpaK11BI | GGWCC | 3 cut(s) | 395, 1048, 1569 |
| XapI | RAATTY | 3 cut(s) | 685, 1330, 1882 |
| XbaI | TCTAGA | 2 cut(s) | 277, 583 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1411 |
| XmiI | GTMKAC | 1 cut(s) | 859 |
| XmnI | GAANNNNTTC | 2 cut(s) | 720, 1105 |
| XspI | CTAG | 8 cut(s) | 278, 392, 584, 725, 855, 1007, 1553, 1802 |
| Zsp2I | ATGCAT | 1 cut(s) | 773 |