Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005754

Physical Location & Seq

Genomic Coordinates Forward (+)

40397358 .. 40401208

Gene Structure 3851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1284400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGACGACGATGAATAATCCTCCAACCAAAAAGAAGAAAGGTCGTCCTTCTCTCCTGGATCTCCAGAAACGCGCCCTCCTCCAACAACAGCAGCAGGACCAATGCCCAAACCCTCGCCGTCTATCCACACGCCGGAACCCTACTCCTCTCGATTCATCCCCGCCGTCCAATTCCCTTGCCCATGCCGATGACGACGATGAGCGCGCAAAGAAGAAGCATAAGCCCCTCCTCGGTTTTAATCCCAATTCGACTCCGACATTGTCGCCCTTTAATTCGGGCGCCTACGGTTCCGATTCGAACGCGGGTGGTGAGGATCCGGAGGCCGCTCTCAAGATCAGCACCGTCCACCACGGATCTAATCATATGAGGCGTGAAGAGATTTTGAAAGCGACAGACAGTAGCAGTTTATTACATGGGTCGCTGGTGGAGTCCGGTCCCACGACACCTTTGCCAGACAAAAAGTTGCTGGTGTTCATCCTTGATAGGCTTCAAAAAAAGGACACTCGCGGGGTGTTCTCTGAGCCCGTTGATCCAGAAGAGCTTCCGGATTATCAGGAAATCATTCAAAACCCAATGGATTTTGGAACCGTGAGGACGAAACTAGATCAGGGAGCTTACTCCAACTTGGAGCAGTTTGAGAAAGATGTGTTCTTGATATGTTCAAATGCAATGGAGTATAATGCACCAGACACTATTTACTTTCGACAGGCACGATCTATACAAGAGCTTGCAAAAAAGGACTTCGAAAATTTGAGGCAAGTAAACGAAGATGGTGATCCGAAACCAAAAATTGCGAGGAGAGGCAGGCCACCTGGCAAGAGCATGAAAAAATCAATTGAAGGCTCTCCGCTTGATCGTGTAGGTCCTCAATTTGTATCAGAAACTACTCTTGCTTCTGGAGGAGAGAATCCTAGCTTGTCCGGCACATACAATCTAAGACGGCCTGCTCCCCATAAGTTCAGGTCTTCTGATGCATTAAATATGGGGCCCCATGGGTCTCTTAGTGGTGAAACTGGTGCTAGTTGGTTGCCTGGCTGGGAGAATGAATTTCCAGCTTCTGTATTGAGGAGTGATCTAAAGTATGGAAAGAAACATTTTACAGTAGATGAGAACAGACGTGACACTTATACACAAGCTCTGGCTTTTGGTGATGAGCCATCAATGTTTTCTGGTTGTGAAGGAGAGTGGAAGCAACTTGTGGCGGTAGGTCTACAATTTGAGCATGGTTATGCAAGGAGTCTAGCTCGTTTTGCTGCAAATCTTGGACCTGTTGGTTGGAAGGTTGCTTCAAAGAAAATTGCAAGTGTTTTGCCTGTTGGAATCAAGTTTGGTCCAGGATGGATAGGAGAAAATGAGACATGGAGGATGCAACCGTTTTCAGTCCGTGAGAGGGAACAGAGGGTTCAAAGCAACCCTGCATCCGATGACCACACAAACAAACTTGTACCTCAAAGTACATTATGCTCAGACGAAGCCAGATTGTCAGAAATTTCAAGTGGACCGAGATGTAGCCACGTGCTTGGTGGGGAAGCATCGTGGAATGGTTCATCCTTACACAATAAACATGTTGCTTATACATTCCCCTCGGGCTTGAACGTCAAACTGGGTGCAGCAGGCTCACCTCAAATGGGTCTGCACCAGCAACAGCAACAGCAACCGCAGCCGGATTTAGCTTTGCAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

562

Amino Acids

61.89

Weight (kDa)

8.39

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	159 - 238	1.9e-23	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20670 AT1G76380 AT1G76380 AT1G76380
fragaria_vesca	FvH4_5g24560 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400
malus_domestica	MD06G1010000.v1.1 MD16G1284400.v1.1
prunus_persica	Prupe.5G010200_v2.0.a1
pyrus_communis	pycom06g00820 pycom16g25950
rosa_chinensis	RchiOBHm_Chr7g0215631
rosa_laevigata	RLG00000002637
rosa_multiflora	Rmu_sc0000898.1_g000040 Rmu_sc0007602.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243980
rosa_rugosa	Rorug07G0155700 Rorug07G0155700
rosa_samantha	Rh7AG292100 Rh7BG284700 Rh7CG312100 Rh7DG295500
rosa_wichuraiana	Rw7G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	1210
AccII	CGCG	4 cut(s)	72, 204, 302, 507
AccIII	TCCGGA	2 cut(s)	316, 544
AciI	CCGC	7 cut(s)	161, 302, 324, 507, 848, 1202, 1658
AclWI	GGATC	6 cut(s)	66, 308, 321, 361, 524, 770
AcsI	RAATTY	3 cut(s)	748, 1046, 1488
AcvI	CACGTG	1 cut(s)	1516
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	1446, 1456
AfiI	CCNNNNNNNGG	4 cut(s)	132, 230, 1390, 1628
AflIII	ACRYGT	1 cut(s)	1564
AgsI	TTSAA	9 cut(s)	385, 491, 566, 663, 839, 1290, 1406, 1494, 1594
AjiI	CACGTC	1 cut(s)	1118
AjnI	CCWGG	4 cut(s)	54, 811, 1030, 1333
AluBI	AGCT	9 cut(s)	541, 614, 727, 915, 1055, 1136, 1244, 1673, 1681
AluI	AGCT	9 cut(s)	541, 614, 727, 915, 1055, 1136, 1244, 1673, 1681
Alw26I	GTCTC	2 cut(s)	1002, 1349
AlwI	GGATC	6 cut(s)	66, 308, 321, 361, 524, 770
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	1 cut(s)	1585
Aor13HI	TCCGGA	2 cut(s)	316, 544
AoxI	GGCC	4 cut(s)	321, 806, 941, 986
ApaI	GGGCCC	1 cut(s)	990
ApeKI	GCWGC	5 cut(s)	91, 1253, 1610, 1660, 1678
ApoI	RAATTY	3 cut(s)	748, 1046, 1488
Asp700I	GAANNNNTTC	2 cut(s)	540, 561
AspLEI	GCGC	4 cut(s)	74, 204, 206, 281
AspS9I	GGNCC	8 cut(s)	97, 434, 863, 986, 987, 1265, 1331, 1499
AsuHPI	GGTGA	5 cut(s)	320, 785, 1019, 1160, 1611
AsuII	TTCGAA	2 cut(s)	296, 744
AvaI	CYCGRG	1 cut(s)	1585
AvaII	GGWCC	6 cut(s)	97, 434, 863, 1265, 1331, 1499
BaeGI	GKGCMC	1 cut(s)	990
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	525, 990
BbrPI	CACGTG	1 cut(s)	1516
BbsI	GAAGAC	1 cut(s)	957
BbvI	GCAGC	4 cut(s)	103, 1240, 1622, 1672
BccI	CCATC	3 cut(s)	764, 1165, 1332
BceAI	ACGGC	3 cut(s)	102, 148, 956
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciT130I	CCWGG	4 cut(s)	56, 813, 1032, 1335
BcoDI	GTCTC	2 cut(s)	1002, 1349
BfaI	CTAG	4 cut(s)	602, 912, 1020, 1241
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	6 cut(s)	92, 324, 1254, 1611, 1661, 1679
BlsI	GCNGC	6 cut(s)	93, 325, 1255, 1612, 1662, 1680
Bme1390I	CCNGG	4 cut(s)	56, 813, 1032, 1335
Bme18I	GGWCC	6 cut(s)	97, 434, 863, 1265, 1331, 1499
BmeT110I	CYCGRG	1 cut(s)	1585
BmgBI	CACGTC	1 cut(s)	1118
BmgT120I	GGNCC	8 cut(s)	97, 434, 863, 986, 987, 1265, 1331, 1499
BmiI	GGNNCC	9 cut(s)	137, 280, 289, 315, 436, 586, 987, 988, 989
BmrFI	CCNGG	4 cut(s)	56, 813, 1032, 1335
BmrI	ACTGGG	1 cut(s)	1613
BmsI	GCATC	4 cut(s)	961, 1356, 1427, 1541
BmuI	ACTGGG	1 cut(s)	1613
BpiI	GAAGAC	1 cut(s)	957
BplI	GAGNNNNNCTC	2 cut(s)	1228, 1260
BpmI	CTGGAG	2 cut(s)	47, 918
Bpu14I	TTCGAA	2 cut(s)	296, 744
BpuEI	CTTGAG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	1516
BsaBI	GATNNNNATC	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	1002
BsaJI	CCNNGG	4 cut(s)	229, 349, 991, 1584
BsaWI	WCCGGW	3 cut(s)	316, 431, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 230, 1390, 1628
Bse1I	ACTGG	2 cut(s)	1018, 1608
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	774
BseAI	TCCGGA	2 cut(s)	316, 544
BseBI	CCWGG	4 cut(s)	56, 813, 1032, 1335
BseDI	CCNNGG	4 cut(s)	229, 349, 991, 1584
BseGI	GGATG	6 cut(s)	155, 474, 1343, 1371, 1418, 1547
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	4 cut(s)	132, 230, 1390, 1628
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	510, 1479
BseNI	ACTGG	2 cut(s)	1018, 1608
BsePI	GCGCGC	1 cut(s)	202
BseRI	GAGGAG	6 cut(s)	68, 135, 218, 811, 915, 1081
BseSI	GKGCMC	1 cut(s)	990
BseXI	GCAGC	4 cut(s)	103, 1240, 1622, 1672
BseYI	CCCAGC	1 cut(s)	1035
BsgI	GTGCAG	2 cut(s)	1619, 1629
Bsh1236I	CGCG	4 cut(s)	72, 204, 302, 507
BshFI	GGCC	4 cut(s)	323, 808, 943, 988
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	1585
BsiSI	CCGG	6 cut(s)	133, 317, 432, 545, 921, 1664
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	4 cut(s)	132, 230, 1390, 1628
BsmAI	GTCTC	2 cut(s)	1002, 1349
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	4 cut(s)	323, 808, 943, 988
Bso31I	GGTCTC	1 cut(s)	1002
BsoBI	CYCGRG	1 cut(s)	1585
Bsp119I	TTCGAA	2 cut(s)	296, 744
Bsp120I	GGGCCC	1 cut(s)	986
Bsp1286I	GDGCHC	2 cut(s)	525, 990
Bsp13I	TCCGGA	2 cut(s)	316, 544
Bsp19I	CCATGG	1 cut(s)	991
BspACI	CCGC	7 cut(s)	161, 302, 324, 507, 848, 1202, 1658
BspANI	GGCC	4 cut(s)	323, 808, 943, 988
BspCNI	CTCAG	2 cut(s)	511, 1478
BspEI	TCCGGA	2 cut(s)	316, 544
BspFNI	CGCG	4 cut(s)	72, 204, 302, 507
BspLI	GGNNCC	9 cut(s)	137, 280, 289, 315, 436, 586, 987, 988, 989
BspPI	GGATC	6 cut(s)	66, 308, 321, 361, 524, 770
BspQI	GCTCTTC	1 cut(s)	531
BspT104I	TTCGAA	2 cut(s)	296, 744
BspT107I	GGYRCC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	1002
BsrBI	CCGCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	1018, 1608
BssECI	CCNNGG	4 cut(s)	229, 349, 991, 1584
BssHII	GCGCGC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	991
Bst2UI	CCWGG	4 cut(s)	56, 813, 1032, 1335
Bst4CI	ACNGT	6 cut(s)	287, 343, 398, 589, 1102, 1374
Bst6I	CTCTTC	2 cut(s)	369, 531
BstACI	GRCGYC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	1516
BstBI	TTCGAA	2 cut(s)	296, 744
BstC8I	GCNNGC	5 cut(s)	204, 729, 806, 945, 1615
BstDEI	CTNAG	4 cut(s)	519, 935, 1001, 1465
BstDSI	CCRYGG	2 cut(s)	349, 991
BstF5I	GGATG	6 cut(s)	155, 474, 1343, 1371, 1418, 1547
BstFNI	CGCG	4 cut(s)	72, 204, 302, 507
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	4 cut(s)	74, 204, 206, 281
BstMAI	GTCTC	2 cut(s)	1002, 1349
BstMWI	GCNNNNNNNGC	3 cut(s)	921, 1250, 1660
BstNI	CCWGG	4 cut(s)	56, 813, 1032, 1335
BstNSI	RCATGY	1 cut(s)	1568
BstSCI	CCNGG	4 cut(s)	54, 811, 1030, 1333
BstSLI	GKGCMC	1 cut(s)	990
BstUI	CGCG	4 cut(s)	72, 204, 302, 507
BstV1I	GCAGC	4 cut(s)	103, 1240, 1622, 1672
BstV2I	GAAGAC	1 cut(s)	957
BstX2I	RGATCY	3 cut(s)	58, 313, 353
BstXI	CCANNNNNNTGG	1 cut(s)	1520
BstYI	RGATCY	3 cut(s)	58, 313, 353
BsuRI	GGCC	4 cut(s)	323, 808, 943, 988
BtgI	CCRYGG	2 cut(s)	349, 991
BtrI	CACGTC	1 cut(s)	1118
BtsCI	GGATG	6 cut(s)	155, 474, 1343, 1371, 1418, 1547
Cac8I	GCNNGC	5 cut(s)	204, 729, 806, 945, 1615
CaiI	CAGNNNCTG	1 cut(s)	1058
CfoI	GCGC	4 cut(s)	74, 204, 206, 281
Cfr13I	GGNCC	8 cut(s)	97, 434, 863, 986, 987, 1265, 1331, 1499
Csp6I	GTAC	2 cut(s)	1445, 1455
CviAII	CATG	7 cut(s)	182, 413, 823, 992, 1223, 1359, 1565
CviQI	GTAC	2 cut(s)	1445, 1455
DdeI	CTNAG	4 cut(s)	519, 935, 1001, 1465
DinI	GGCGCC	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	369, 531
EarI	CTCTTC	2 cut(s)	369, 531
Eco130I	CCWWGG	1 cut(s)	991
Eco24I	GRGCYC	2 cut(s)	525, 990
Eco31I	GGTCTC	1 cut(s)	1002
Eco47I	GGWCC	6 cut(s)	97, 434, 863, 1265, 1331, 1499
Eco72I	CACGTG	1 cut(s)	1516
Eco88I	CYCGRG	1 cut(s)	1585
EcoO109I	RGGNCCY	3 cut(s)	863, 986, 987
EcoRII	CCWGG	4 cut(s)	54, 811, 1030, 1333
EcoT14I	CCWWGG	1 cut(s)	991
EcoT22I	ATGCAT	1 cut(s)	976
EcoT38I	GRGCYC	2 cut(s)	525, 990
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	7 cut(s)	185, 416, 826, 995, 1226, 1362, 1568
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	7 cut(s)	181, 412, 822, 991, 1222, 1358, 1564
FauI	CCCGC	3 cut(s)	168, 295, 500
FauNDI	CATATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	1210
Fnu4HI	GCNGC	6 cut(s)	92, 324, 1254, 1611, 1661, 1679
FokI	GGATG	6 cut(s)	142, 461, 1350, 1378, 1405, 1534
FriOI	GRGCYC	2 cut(s)	525, 990
Fsp4HI	GCNGC	6 cut(s)	92, 324, 1254, 1611, 1661, 1679
FspBI	CTAG	4 cut(s)	602, 912, 1020, 1241
GlaI	GCGC	4 cut(s)	73, 203, 205, 280
GluI	GCNGC	6 cut(s)	92, 324, 1254, 1611, 1661, 1679
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	2 cut(s)	47, 918
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	323, 808, 943, 988
HapII	CCGG	6 cut(s)	133, 317, 432, 545, 921, 1664
HhaI	GCGC	4 cut(s)	74, 204, 206, 281
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	185, 416, 826, 995, 1226, 1362, 1568
Hin6I	GCGC	4 cut(s)	72, 202, 204, 279
HinP1I	GCGC	4 cut(s)	72, 202, 204, 279
HinfI	GANTC	7 cut(s)	152, 250, 293, 428, 907, 1237, 1320
HpaII	CCGG	6 cut(s)	133, 317, 432, 545, 921, 1664
HphI	GGTGA	5 cut(s)	320, 785, 1019, 1160, 1611
Hpy166II	GTNNAC	4 cut(s)	346, 763, 1211, 1499
Hpy188I	TCNGA	9 cut(s)	255, 292, 520, 780, 880, 970, 1423, 1468, 1486
Hpy188III	TCNNGA	9 cut(s)	64, 149, 317, 331, 533, 545, 554, 652, 897
Hpy8I	GTNNAC	4 cut(s)	346, 763, 1211, 1499
Hpy99I	CGWCG	2 cut(s)	10, 197
HpyAV	CCTTC	4 cut(s)	57, 833, 1172, 1273
HpyCH4III	ACNGT	6 cut(s)	287, 343, 398, 589, 1102, 1374
HpyCH4IV	ACGT	3 cut(s)	1117, 1515, 1596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	921, 1250, 1660
HpyF3I	CTNAG	4 cut(s)	519, 935, 1001, 1465
HpySE526I	ACGT	3 cut(s)	1117, 1515, 1596
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	7 cut(s)	185, 416, 826, 995, 1226, 1362, 1568
HspAI	GCGC	4 cut(s)	72, 202, 204, 279
KasI	GGCGCC	1 cut(s)	278
Kpn2I	TCCGGA	2 cut(s)	316, 544
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	3 cut(s)	611, 628, 952
Lsp1109I	GCAGC	4 cut(s)	103, 1240, 1622, 1672
LweI	GCATC	4 cut(s)	961, 1356, 1427, 1541
MaeI	CTAG	4 cut(s)	602, 912, 1020, 1241
MaeII	ACGT	3 cut(s)	1117, 1515, 1596
MaeIII	GTNAC	1 cut(s)	1118
MbiI	CCGCTC	1 cut(s)	326
MboII	GAAGA	6 cut(s)	46, 223, 386, 548, 779, 957
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	3 cut(s)	58, 313, 353
MhlI	GDGCHC	2 cut(s)	525, 990
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	3 cut(s)	244, 437, 1246
MmeI	TCCRAC	6 cut(s)	47, 106, 278, 645, 1256, 1297
Mph1103I	ATGCAT	1 cut(s)	976
MroI	TCCGGA	2 cut(s)	316, 544
MroXI	GAANNNNTTC	2 cut(s)	540, 561
MseI	TTAA	3 cut(s)	237, 270, 977
MslI	CAYNNNNRTG	2 cut(s)	186, 1227
MspI	CCGG	6 cut(s)	133, 317, 432, 545, 921, 1664
MspR9I	CCNGG	4 cut(s)	56, 813, 1032, 1335
MunI	CAATTG	1 cut(s)	834
MvaI	CCWGG	4 cut(s)	56, 813, 1032, 1335
MvnI	CGCG	4 cut(s)	72, 204, 302, 507
MwoI	GCNNNNNNNGC	3 cut(s)	921, 1250, 1660
NarI	GGCGCC	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	991
NdeI	CATATG	1 cut(s)	363
NlaIII	CATG	7 cut(s)	185, 416, 826, 995, 1226, 1362, 1568
NlaIV	GGNNCC	9 cut(s)	137, 280, 289, 315, 436, 586, 987, 988, 989
NmuCI	GTSAC	1 cut(s)	1118
NsiI	ATGCAT	1 cut(s)	976
NspI	RCATGY	1 cut(s)	1568
NspV	TTCGAA	2 cut(s)	296, 744
PauI	GCGCGC	1 cut(s)	202
PciI	ACATGT	1 cut(s)	1564
PciSI	GCTCTTC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PdmI	GAANNNNTTC	2 cut(s)	540, 561
PfeI	GAWTC	4 cut(s)	152, 293, 907, 1320
PflFI	GACNNNGTC	1 cut(s)	259
PfoI	TCCNGGA	2 cut(s)	54, 1333
PkrI	GCNGC	6 cut(s)	93, 325, 1255, 1612, 1662, 1680
PleI	GAGTC	3 cut(s)	244, 436, 1245
PluTI	GGCGCC	1 cut(s)	282
PmaCI	CACGTG	1 cut(s)	1516
PmlI	CACGTG	1 cut(s)	1516
PpsI	GAGTC	3 cut(s)	244, 436, 1245
Ppu21I	YACGTR	1 cut(s)	1516
PpuMI	RGGWCCY	1 cut(s)	863
PscI	ACATGT	1 cut(s)	1564
Psp5II	RGGWCCY	1 cut(s)	863
Psp6I	CCWGG	4 cut(s)	54, 811, 1030, 1333
PspCI	CACGTG	1 cut(s)	1516
PspFI	CCCAGC	1 cut(s)	1035
PspGI	CCWGG	4 cut(s)	54, 811, 1030, 1333
PspN4I	GGNNCC	9 cut(s)	137, 280, 289, 315, 436, 586, 987, 988, 989
PspOMI	GGGCCC	1 cut(s)	986
PspPI	GGNCC	8 cut(s)	97, 434, 863, 986, 987, 1265, 1331, 1499
PspPPI	RGGWCCY	1 cut(s)	863
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	3 cut(s)	58, 313, 353
PsyI	GACNNNGTC	1 cut(s)	259
PteI	GCGCGC	1 cut(s)	202
RsaI	GTAC	2 cut(s)	1446, 1456
RsaNI	GTAC	2 cut(s)	1445, 1455
RseI	CAYNNNNRTG	2 cut(s)	186, 1227
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	237, 270, 977
SatI	GCNGC	6 cut(s)	92, 324, 1254, 1611, 1661, 1679
Sau96I	GGNCC	8 cut(s)	97, 434, 863, 986, 987, 1265, 1331, 1499
SchI	GAGTC	3 cut(s)	244, 437, 1246
ScrFI	CCNGG	4 cut(s)	56, 813, 1032, 1335
SduI	GDGCHC	2 cut(s)	525, 990
SfaNI	GCATC	4 cut(s)	961, 1356, 1427, 1541
SfoI	GGCGCC	1 cut(s)	280
SfuI	TTCGAA	2 cut(s)	296, 744
SinI	GGWCC	6 cut(s)	97, 434, 863, 1265, 1331, 1499
SmiMI	CAYNNNNRTG	2 cut(s)	186, 1227
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SsiI	CCGC	7 cut(s)	161, 302, 324, 507, 848, 1202, 1658
SspDI	GGCGCC	1 cut(s)	278
SspMI	CTAG	4 cut(s)	602, 912, 1020, 1241
StyD4I	CCNGG	4 cut(s)	54, 811, 1030, 1333
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	6 cut(s)	287, 343, 398, 589, 1102, 1374
TaiI	ACGT	3 cut(s)	1120, 1518, 1599
TaqI	TCGA	5 cut(s)	150, 248, 296, 703, 744
TaqII	GACCGA	1 cut(s)	1516
TatI	WGTACW	1 cut(s)	1454
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	4 cut(s)	152, 293, 907, 1320
Tru1I	TTAA	3 cut(s)	237, 270, 977
Tru9I	TTAA	3 cut(s)	237, 270, 977
TseFI	GTSAC	1 cut(s)	1118
TseI	GCWGC	5 cut(s)	91, 1253, 1610, 1660, 1678
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	6 cut(s)	26, 144, 463, 839, 1059, 1536
TspGWI	ACGGA	2 cut(s)	366, 1373
Tth111I	GACNNNGTC	1 cut(s)	259
VpaK11BI	GGWCC	6 cut(s)	97, 434, 863, 1265, 1331, 1499
XapI	RAATTY	3 cut(s)	748, 1046, 1488
XceI	RCATGY	1 cut(s)	1568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1520
XmiI	GTMKAC	1 cut(s)	1210
XmnI	GAANNNNTTC	2 cut(s)	540, 561
XspI	CTAG	4 cut(s)	602, 912, 1020, 1241
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.