Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005754

Physical Location & Seq

Genomic Coordinates Forward (+)

36422170 .. 36426381

Gene Structure 4212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGGGGGAGGCATCAGAAACGACGATGACGATAATGAACAATCAAGCCCCTCCTAAAAAGAAGAAGGGCCGACCTTCGCTTCTCGATCTCCAGAAGCGCTTCCTCCAGCAGCAGCAAAACCCCCATTTCCTCAACCCTAGCGCCGCCGCCGCCGCCGCCGCCCGCCCCGCCACTCGCCGCAGCACCAACCCTAACGCCCCTCATCCTCCGCCGGACGACGACGACGACGACGACGACGAGCGGGCCAGGAAGAAGCACAAGCTCCTCCTCGGAATCAACCACCAACAACACAATCGCAAACCGACATTGTCGCCGTTCAATTCCGGCCCCTACGGCTCCGATTCCAATGCCGACGACGACGATCCGGACAAGATCGGATCCAATCATACGAGCCAAAGCGTGTTGAAAGCGACTGACAGTAGCAGTATTCATGGGACGCAGGTGGAGTTTGGTCCCACTACGCCTTTGCCAGACAAAAAGTTGTTGGTGTTCATCCTTGATAGGCTTCAAAAAAAGGACACTCGTGGAGTGTTTTCGGAGCCTGTGGATCCAGAAGAGCTACCTGATTATCATGAAATCATTGAAAACCCGATGGATTTTGGAACTGTCAGGGAGAAACTGGATCGGGGAGCCTATGCCAACTTGGAACAGTTTGAGAAAGATGTCTTCTTGATATCTTCAAATGCAATGCAGTATAATGCACCAGACACGATTTATTTCCGACAGGCACGGTCTATCCAAGAACTTGCGAAAAAGGACTTTGAAAATTTGAGGCAAGACAACACTGGTGATGGTGGTGAGCCCAAACCAAAAGTTGCCAGGAGAGGCAGGCCACCTGGCAGCAAGACCATGAAAAAGTCGATTGACTTGGCTCCAGTTGAACGTCTTGGTCCTCAATATTTCTCAGAAACGACTCTTCCCCCTGGAGGAGAGACTTCGAGCTTGTCCAATAGTTACAATTTGAGAAAAGGACCTGCTTCATACAAGTTTAGGACTGCTGATGCATTAAACAGAGCTCCACATGGGTCTCTTGGTGGTGATACTTCTGCTAACTGGTTGTCTGAATTGGAGAATGAATTTCCGGCTTCAGTATTGAGGAGCGTGCTAAGGTATGGAAAGAAACAGTTTCCAGTAGACGAGAACAGACGTGAAACCTATAGGCAGTCTCTGGCTACAGAACATGAACCATCTGAACTTACTGGTCTTGAAGGGGAGTGGAACCAACTTATGGCGGTAGGTGTAGCTGCAGAGGAGCATGGTTATGCAAGAAGTATGGCTCGATTTGCTGCAAATCTTGGACCTGTTGCTTGGAAGATTGCTTCTAAGCGGATAGGAAGTGTTTTGCCTGTTGGAGTTGAGTTTGGTCCTGGATGGGTAGGAGAAAATGAGTCAGCAAGGTTGCAGCAGTTTTCATTCCGTCAGGGAGAGGATAAGGTTCAATGCAACCCTGCATCTGATGATCATAAAGACAGATTTCGATGTCAAAGTACATCAGGCCTAAATTCTGTTGCAGATAGATATTTGCTGCAAAACAGTGTTAACATGGAAAACTGTAGAGAATTCAATTCCCAAAATGGGTTGGCGTCACTGAACAGTGGTGTTAGTGGGATACGACCTGTGCCTCCTTTCCAGAATTCCATGATTCACTCTGGTAATCCTGGTTTGAATGGTAGGTTTATGTCTAGTGTTTTACCTCAACCTGAGAATGTTAATATGCCTGCCACAGGGATGTCAAGTTCGACCAACACTTCAGTACCTTCTCATCATCAAATGGTCGGCATGTTTTCAGAGAGGAATATGAACACACAGTTGATGCCTATGGGCGATATTGATTCAAATGAAGCCAGATCAGAAATTTCAAGTAGATCAAGGAATCCCTTGGCCCAAGCACAACCTCAATTGGCGTATGGTGGGGAAACTTCTTGGCAGGGTTTATCGATGAACAATAAACAGGTTTCTTATTCATTACCCCCGGACCTGAATGTTGAATTCGGTGCACCAGGCTCTCCCAGTTCTCTTATTCAAATTGGCGTGCCACAGCAACCAGATTTAGCTTTGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

688

Amino Acids

75.72

Weight (kDa)

6.07

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	165 - 244	5e-23	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20670 AT1G76380 AT1G76380 AT1G76380
fragaria_vesca	FvH4_5g24560 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400
malus_domestica	MD06G1010000.v1.1 MD16G1284400.v1.1
prunus_persica	Prupe.5G010200_v2.0.a1
pyrus_communis	pycom06g00820 pycom16g25950
rosa_chinensis	RchiOBHm_Chr7g0215631
rosa_laevigata	RLG00000002637
rosa_multiflora	Rmu_sc0000898.1_g000040 Rmu_sc0007602.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243980
rosa_rugosa	Rorug07G0155700 Rorug07G0155700
rosa_samantha	Rh7AG292100 Rh7BG284700 Rh7CG312100 Rh7DG295500
rosa_wichuraiana	Rw7G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	2 cut(s)	430, 982
AccB7I	CCANNNNNTGG	1 cut(s)	1228
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	1134
AccIII	TCCGGA	1 cut(s)	364
AclWI	GGATC	6 cut(s)	356, 372, 385, 542, 555, 630
AcsI	RAATTY	7 cut(s)	766, 1076, 1501, 1559, 1633, 1854, 1988
AcuI	CTGAAG	2 cut(s)	1071, 1734
AcyI	GRCGYC	1 cut(s)	1583
AfaI	GTAC	2 cut(s)	1489, 1755
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	4 cut(s)	926, 1228, 1575, 1724
AjiI	CACGTC	1 cut(s)	1148
AjnI	CCWGG	7 cut(s)	245, 818, 835, 922, 1366, 1657, 1999
AloI	GAACNNNNNNTCC	2 cut(s)	1720, 1752
AluBI	AGCT	6 cut(s)	262, 559, 942, 1016, 1244, 2054
AluI	AGCT	6 cut(s)	262, 559, 942, 1016, 1244, 2054
Alw21I	GWGCWC	2 cut(s)	1018, 1999
Alw26I	GTCTC	3 cut(s)	926, 1032, 1170
Alw44I	GTGCAC	1 cut(s)	1995
AlwI	GGATC	6 cut(s)	356, 372, 385, 542, 555, 630
AlwNI	CAGNNNCTG	1 cut(s)	1168
Aor13HI	TCCGGA	1 cut(s)	364
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	6 cut(s)	67, 243, 325, 830, 1495, 1881
ApaLI	GTGCAC	1 cut(s)	1995
ApeKI	GCWGC	8 cut(s)	109, 112, 180, 840, 1244, 1286, 1402, 1525
ApoI	RAATTY	7 cut(s)	766, 1076, 1501, 1559, 1633, 1854, 1988
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	2 cut(s)	99, 143
AsuC2I	CCSGG	1 cut(s)	1973
AsuHPI	GGTGA	3 cut(s)	800, 809, 1049
AvaII	GGWCC	6 cut(s)	452, 890, 971, 1298, 1364, 1975
BaeGI	GKGCMC	1 cut(s)	1999
BaeI	ACNNNNGTAYC	2 cut(s)	1737, 1770
BamHI	GGATCC	2 cut(s)	377, 547
BanII	GRGCYC	2 cut(s)	804, 1018
BauI	CACGAG	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	658
Bbv12I	GWGCWC	2 cut(s)	1018, 1999
BbvI	GCAGC	8 cut(s)	121, 124, 192, 852, 1231, 1273, 1414, 1512
BccI	CCATC	4 cut(s)	586, 785, 1195, 1365
BceAI	ACGGC	2 cut(s)	298, 349
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	7 cut(s)	247, 820, 837, 924, 1368, 1659, 2001
BciVI	GTATCC	1 cut(s)	1602
BclI	TGATCA	1 cut(s)	1459
BcnI	CCSGG	1 cut(s)	1973
BcoDI	GTCTC	3 cut(s)	926, 1032, 1170
BfaI	CTAG	2 cut(s)	138, 1683
BfmI	CTRYAG	4 cut(s)	1156, 1173, 1245, 1552
BfoI	RGCGCY	2 cut(s)	100, 144
BfuAI	ACCTGC	2 cut(s)	430, 982
BfuI	GTATCC	1 cut(s)	1602
BglI	GCCNNNNNGGC	1 cut(s)	333
Bme1390I	CCNGG	8 cut(s)	247, 820, 837, 924, 1368, 1659, 1973, 2001
Bme18I	GGWCC	6 cut(s)	452, 890, 971, 1298, 1364, 1975
BmgBI	CACGTC	1 cut(s)	1148
BmiI	GGNNCC	9 cut(s)	328, 337, 379, 454, 540, 549, 631, 873, 1220
BmrFI	CCNGG	8 cut(s)	247, 820, 837, 924, 1368, 1659, 1973, 2001
BmrI	ACTGGG	1 cut(s)	2004
BmsI	GCATC	4 cut(s)	20, 991, 1460, 1803
BmuI	ACTGGG	1 cut(s)	2004
BpiI	GAAGAC	1 cut(s)	658
BpmI	CTGGAG	4 cut(s)	74, 89, 858, 945
Bpu10I	CCTNAGC	1 cut(s)	1106
BpuMI	CCSGG	1 cut(s)	1973
Bsa29I	ATCGAT	1 cut(s)	1937
BsaHI	GRCGYC	1 cut(s)	1583
BsaI	GGTCTC	1 cut(s)	1032
BsaJI	CCNNGG	4 cut(s)	268, 922, 1878, 1971
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	4 cut(s)	926, 1228, 1575, 1724
Bse1I	ACTGG	7 cut(s)	624, 790, 875, 1058, 1130, 1204, 2010
Bse3DI	GCAATG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	7 cut(s)	247, 820, 837, 924, 1368, 1659, 2001
BseCI	ATCGAT	1 cut(s)	1937
BseDI	CCNNGG	4 cut(s)	268, 922, 1878, 1971
BseGI	GGATG	4 cut(s)	202, 492, 1376, 1734
BseLI	CCNNNNNNNGG	4 cut(s)	926, 1228, 1575, 1724
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	918, 1692
BseNI	ACTGG	7 cut(s)	624, 790, 875, 1058, 1130, 1204, 2010
BseRI	GAGGAG	5 cut(s)	254, 257, 942, 1111, 1265
BseSI	GKGCMC	1 cut(s)	1999
BseXI	GCAGC	8 cut(s)	121, 124, 192, 852, 1231, 1273, 1414, 1512
BshFI	GGCC	6 cut(s)	69, 245, 327, 832, 1497, 1883
BshVI	ATCGAT	1 cut(s)	1937
BsiHKAI	GWGCWC	2 cut(s)	1018, 1999
BsiSI	CCGG	5 cut(s)	212, 324, 365, 1082, 1973
BslFI	GGGAC	2 cut(s)	438, 448
BslI	CCNNNNNNNGG	4 cut(s)	926, 1228, 1575, 1724
BsmAI	GTCTC	3 cut(s)	926, 1032, 1170
BsmFI	GGGAC	2 cut(s)	438, 448
BsnI	GGCC	6 cut(s)	69, 245, 327, 832, 1497, 1883
Bso31I	GGTCTC	1 cut(s)	1032
Bsp1286I	GDGCHC	3 cut(s)	804, 1018, 1999
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
BspANI	GGCC	6 cut(s)	69, 245, 327, 832, 1497, 1883
BspCNI	CTCAG	2 cut(s)	917, 1693
BspDI	ATCGAT	1 cut(s)	1937
BspEI	TCCGGA	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	9 cut(s)	328, 337, 379, 454, 540, 549, 631, 873, 1220
BspMAI	CTGCAG	1 cut(s)	1249
BspMI	ACCTGC	2 cut(s)	430, 982
BspPI	GGATC	6 cut(s)	356, 372, 385, 542, 555, 630
BspQI	GCTCTTC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	1032
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	7 cut(s)	624, 790, 875, 1058, 1130, 1204, 2010
BssECI	CCNNGG	4 cut(s)	268, 922, 1878, 1971
BssMI	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
BssNI	GRCGYC	1 cut(s)	1583
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	1878
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	7 cut(s)	247, 820, 837, 924, 1368, 1659, 2001
Bst4CI	ACNGT	9 cut(s)	419, 607, 651, 732, 1125, 1535, 1553, 1595, 1809
Bst6I	CTCTTC	2 cut(s)	549, 921
BstACI	GRCGYC	1 cut(s)	1583
BstC8I	GCNNGC	6 cut(s)	163, 243, 830, 1103, 1719, 2033
BstDEI	CTNAG	4 cut(s)	904, 1106, 1323, 1701
BstENI	CCTNNNNNAGG	1 cut(s)	1722
BstF5I	GGATG	4 cut(s)	202, 492, 1376, 1734
BstH2I	RGCGCY	2 cut(s)	100, 144
BstHHI	GCGC	2 cut(s)	99, 143
BstKTI	GATC	9 cut(s)	88, 364, 375, 380, 550, 625, 1462, 1850, 1868
BstMAI	GTCTC	3 cut(s)	926, 1032, 1170
BstMBI	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 152, 155, 158, 167, 333, 1283
BstNI	CCWGG	7 cut(s)	247, 820, 837, 924, 1368, 1659, 2001
BstNSI	RCATGY	1 cut(s)	1783
BstSCI	CCNGG	8 cut(s)	245, 818, 835, 922, 1366, 1657, 1971, 1999
BstSFI	CTRYAG	4 cut(s)	1156, 1173, 1245, 1552
BstSLI	GKGCMC	1 cut(s)	1999
BstV1I	GCAGC	8 cut(s)	121, 124, 192, 852, 1231, 1273, 1414, 1512
BstV2I	GAAGAC	1 cut(s)	658
BstX2I	RGATCY	2 cut(s)	377, 547
BstYI	RGATCY	2 cut(s)	377, 547
Bsu15I	ATCGAT	1 cut(s)	1937
BsuI	GTATCC	1 cut(s)	1602
BsuRI	GGCC	6 cut(s)	69, 245, 327, 832, 1497, 1883
BsuTUI	ATCGAT	1 cut(s)	1937
BtrI	CACGTC	1 cut(s)	1148
BtsCI	GGATG	4 cut(s)	202, 492, 1376, 1734
BtsIMutI	CAGTG	4 cut(s)	783, 1540, 1586, 1600
BveI	ACCTGC	2 cut(s)	430, 982
Cac8I	GCNNGC	6 cut(s)	163, 243, 830, 1103, 1719, 2033
CaiI	CAGNNNCTG	1 cut(s)	1168
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	2 cut(s)	99, 143
ClaI	ATCGAT	1 cut(s)	1937
CseI	GACGC	2 cut(s)	445, 1572
Csp6I	GTAC	2 cut(s)	1488, 1754
CviAII	CATG	9 cut(s)	431, 572, 850, 1022, 1181, 1256, 1543, 1639, 1780
CviQI	GTAC	2 cut(s)	1488, 1754
DdeI	CTNAG	4 cut(s)	904, 1106, 1323, 1701
DpnI	GATC	9 cut(s)	87, 363, 374, 379, 549, 624, 1461, 1849, 1867
DpnII	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
Eam1104I	CTCTTC	2 cut(s)	549, 921
EarI	CTCTTC	2 cut(s)	549, 921
EciI	GGCGGA	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	1016
Eco130I	CCWWGG	1 cut(s)	1878
Eco147I	AGGCCT	1 cut(s)	1497
Eco24I	GRGCYC	2 cut(s)	804, 1018
Eco31I	GGTCTC	1 cut(s)	1032
Eco32I	GATATC	1 cut(s)	675
Eco47I	GGWCC	6 cut(s)	452, 890, 971, 1298, 1364, 1975
Eco47III	AGCGCT	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	1016
Eco57I	CTGAAG	2 cut(s)	1071, 1734
EcoICRI	GAGCTC	1 cut(s)	1016
EcoNI	CCTNNNNNAGG	1 cut(s)	1722
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRI	GAATTC	3 cut(s)	1559, 1633, 1988
EcoRII	CCWGG	7 cut(s)	245, 818, 835, 922, 1366, 1657, 1999
EcoRV	GATATC	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	1878
EcoT22I	ATGCAT	1 cut(s)	1006
EcoT38I	GRGCYC	2 cut(s)	804, 1018
ErhI	CCWWGG	1 cut(s)	1878
FaeI	CATG	9 cut(s)	434, 575, 853, 1025, 1184, 1259, 1546, 1642, 1783
FaqI	GGGAC	2 cut(s)	438, 448
FatI	CATG	9 cut(s)	430, 571, 849, 1021, 1180, 1255, 1542, 1638, 1779
FauI	CCCGC	3 cut(s)	170, 175, 234
FbaI	TGATCA	1 cut(s)	1459
FblI	GTMKAC	1 cut(s)	1134
FokI	GGATG	4 cut(s)	189, 479, 1383, 1741
FriOI	GRGCYC	2 cut(s)	804, 1018
FspBI	CTAG	2 cut(s)	138, 1683
GlaI	GCGC	2 cut(s)	98, 142
GsuI	CTGGAG	4 cut(s)	74, 89, 858, 945
HaeII	RGCGCY	2 cut(s)	100, 144
HaeIII	GGCC	6 cut(s)	69, 245, 327, 832, 1497, 1883
HapII	CCGG	5 cut(s)	212, 324, 365, 1082, 1973
HgaI	GACGC	2 cut(s)	445, 1572
HhaI	GCGC	2 cut(s)	99, 143
Hin1I	GRCGYC	1 cut(s)	1583
Hin1II	CATG	9 cut(s)	434, 575, 853, 1025, 1184, 1259, 1546, 1642, 1783
Hin6I	GCGC	2 cut(s)	97, 141
HinP1I	GCGC	2 cut(s)	97, 141
HincII	GTYRAC	1 cut(s)	1540
HindII	GTYRAC	1 cut(s)	1540
HinfI	GANTC	7 cut(s)	273, 341, 913, 1388, 1642, 1832, 1873
HpaI	GTTAAC	1 cut(s)	1540
HpaII	CCGG	5 cut(s)	212, 324, 365, 1082, 1973
HphI	GGTGA	3 cut(s)	800, 809, 1049
Hpy166II	GTNNAC	3 cut(s)	1135, 1540, 1997
Hpy188III	TCNNGA	8 cut(s)	83, 91, 365, 551, 572, 670, 1205, 1630
Hpy8I	GTNNAC	3 cut(s)	1135, 1540, 1997
HpyAV	CCTTC	4 cut(s)	58, 84, 1202, 1767
HpyCH4III	ACNGT	9 cut(s)	419, 607, 651, 732, 1125, 1535, 1553, 1595, 1809
HpyCH4IV	ACGT	2 cut(s)	883, 1147
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 152, 155, 158, 167, 333, 1283
HpyF3I	CTNAG	4 cut(s)	904, 1106, 1323, 1701
HpySE526I	ACGT	2 cut(s)	883, 1147
Hsp92I	GRCGYC	1 cut(s)	1583
Hsp92II	CATG	9 cut(s)	434, 575, 853, 1025, 1184, 1259, 1546, 1642, 1783
HspAI	GCGC	2 cut(s)	97, 141
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	1459
KspAI	GTTAAC	1 cut(s)	1540
Kzo9I	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	8 cut(s)	267, 341, 538, 629, 877, 1021, 1098, 1252
Lsp1109I	GCAGC	8 cut(s)	121, 124, 192, 852, 1231, 1273, 1414, 1512
LweI	GCATC	4 cut(s)	20, 991, 1460, 1803
MaeI	CTAG	2 cut(s)	138, 1683
MaeII	ACGT	2 cut(s)	883, 1147
MaeIII	GTNAC	2 cut(s)	953, 1584
MalI	GATC	9 cut(s)	87, 363, 374, 379, 549, 624, 1461, 1849, 1867
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
MboII	GAAGA	7 cut(s)	73, 262, 566, 658, 669, 908, 1324
MfeI	CAATTG	1 cut(s)	1898
MflI	RGATCY	2 cut(s)	377, 547
MhlI	GDGCHC	3 cut(s)	804, 1018, 1999
MlyI	GAGTC	2 cut(s)	907, 1397
MmeI	TCCRAC	2 cut(s)	745, 1330
Mph1103I	ATGCAT	1 cut(s)	1006
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	3 cut(s)	1007, 1539, 1710
MslI	CAYNNNNRTG	2 cut(s)	1260, 1727
MspI	CCGG	5 cut(s)	212, 324, 365, 1082, 1973
MspR9I	CCNGG	8 cut(s)	247, 820, 837, 924, 1368, 1659, 1973, 2001
MunI	CAATTG	1 cut(s)	1898
MvaI	CCWGG	7 cut(s)	247, 820, 837, 924, 1368, 1659, 2001
MwoI	GCNNNNNNNGC	7 cut(s)	149, 152, 155, 158, 167, 333, 1283
NciI	CCSGG	1 cut(s)	1973
NdeII	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
NlaIII	CATG	9 cut(s)	434, 575, 853, 1025, 1184, 1259, 1546, 1642, 1783
NlaIV	GGNNCC	9 cut(s)	328, 337, 379, 454, 540, 549, 631, 873, 1220
NmuCI	GTSAC	1 cut(s)	1584
NsiI	ATGCAT	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	1783
PagI	TCATGA	1 cut(s)	571
PaqCI	CACCTGC	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	1497
PciSI	GCTCTTC	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	6 cut(s)	26, 222, 225, 228, 231, 234
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	5 cut(s)	273, 341, 1642, 1832, 1873
PflFI	GACNNNGTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	1228
PfoI	TCCNGGA	1 cut(s)	1366
PleI	GAGTC	2 cut(s)	907, 1396
PpsI	GAGTC	2 cut(s)	907, 1396
PpuMI	RGGWCCY	1 cut(s)	971
Psp124BI	GAGCTC	1 cut(s)	1018
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	7 cut(s)	245, 818, 835, 922, 1366, 1657, 1999
PspGI	CCWGG	7 cut(s)	245, 818, 835, 922, 1366, 1657, 1999
PspN4I	GGNNCC	9 cut(s)	328, 337, 379, 454, 540, 549, 631, 873, 1220
PspPPI	RGGWCCY	1 cut(s)	971
PstI	CTGCAG	1 cut(s)	1249
PstNI	CAGNNNCTG	1 cut(s)	1168
PsuI	RGATCY	2 cut(s)	377, 547
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	2 cut(s)	1489, 1755
RsaNI	GTAC	2 cut(s)	1488, 1754
RseI	CAYNNNNRTG	2 cut(s)	1260, 1727
SacI	GAGCTC	1 cut(s)	1018
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	1007, 1539, 1710
Sau3AI	GATC	9 cut(s)	85, 361, 372, 377, 547, 622, 1459, 1847, 1865
SchI	GAGTC	2 cut(s)	907, 1397
ScrFI	CCNGG	8 cut(s)	247, 820, 837, 924, 1368, 1659, 1973, 2001
SduI	GDGCHC	3 cut(s)	804, 1018, 1999
SfaNI	GCATC	4 cut(s)	20, 991, 1460, 1803
SfcI	CTRYAG	4 cut(s)	1156, 1173, 1245, 1552
SinI	GGWCC	6 cut(s)	452, 890, 971, 1298, 1364, 1975
SmiMI	CAYNNNNRTG	2 cut(s)	1260, 1727
SseBI	AGGCCT	1 cut(s)	1497
SspI	AATATT	1 cut(s)	899
SspMI	CTAG	2 cut(s)	138, 1683
SstI	GAGCTC	1 cut(s)	1018
StuI	AGGCCT	1 cut(s)	1497
StyD4I	CCNGG	8 cut(s)	245, 818, 835, 922, 1366, 1657, 1971, 1999
StyI	CCWWGG	1 cut(s)	1878
TaaI	ACNGT	9 cut(s)	419, 607, 651, 732, 1125, 1535, 1553, 1595, 1809
TaiI	ACGT	2 cut(s)	886, 1150
TaqI	TCGA	7 cut(s)	84, 860, 938, 1279, 1477, 1739, 1937
TatI	WGTACW	1 cut(s)	1487
TauI	GCSGC	7 cut(s)	146, 149, 152, 155, 158, 161, 180
TfiI	GAWTC	5 cut(s)	273, 341, 1642, 1832, 1873
Tru1I	TTAA	3 cut(s)	1007, 1539, 1710
Tru9I	TTAA	3 cut(s)	1007, 1539, 1710
TscAI	CASTG	4 cut(s)	790, 1540, 1593, 1600
TseFI	GTSAC	1 cut(s)	1584
TseI	GCWGC	8 cut(s)	109, 112, 180, 840, 1244, 1286, 1402, 1525
Tsp45I	GTSAC	1 cut(s)	1584
TspGWI	ACGGA	1 cut(s)	1406
TspRI	CASTG	4 cut(s)	790, 1540, 1593, 1600
Tth111I	GACNNNGTC	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	1228
VneI	GTGCAC	1 cut(s)	1995
VpaK11BI	GGWCC	6 cut(s)	452, 890, 971, 1298, 1364, 1975
XagI	CCTNNNNNAGG	1 cut(s)	1722
XapI	RAATTY	7 cut(s)	766, 1076, 1501, 1559, 1633, 1854, 1988
XceI	RCATGY	1 cut(s)	1783
XmiI	GTMKAC	1 cut(s)	1134
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	138, 1683
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.