Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005754

Physical Location & Seq

Genomic Coordinates Reverse (-)

33323066 .. 33327586

Gene Structure 4521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGGGGGAGGCATCAGAAACGACGATGACGATAATGAACAATCAAGCCCCTCCTAAAAAGAAGAAGGGCCGACCTTCGCTTCTCGATCTCCAGAAGCGCTTCCTCCAGCAGCAGCAAAACCCCCATTTCCTCAACCCTAGCGCCGCCGCCGCCGCCCGCCCCGCCACTCGCCGCAGCGCCAACCCTAACGCTCCTCCTCCGCAGGACGATGACGACGACGACGACGACGAGCGCGCCAAGAAGAAGCACAAGCTCCTCCTCGGAATCAACCACCAACACCACAATCGCAAACCGACATTGTCGCCGTTCAATTCCGGCCCCTACGGCTCCGATTCCAATGCCGACGACGACGATCCGGACAAGATCGGATCCAATCATACGAGCCAAAGCGTGTTGAAAGCGACTGACAGTAGCAGTATTCATGGGACGCAGGTGGAGTTTGGTCCCACTACGCCTTTGCCAGACAAAAAGTTGTTGGTGTTCATCCTTGATAGGCTTCAAAAAAAGGACACTCGTGGAGTGTTTTCGGAGCCTGTGGATCCAGAAGAGCTGCCTGATTATCATGAAATCATTGAAAACCCGATGGATTTTGGAACTGTCAGGGAGAAACTGGATCAGGGAGCCTATGCCAACTTGGAACGGTTTGAGAAAGATGTCTTCTTGATATCTTCAAATGCAATGCAGTATAATGCACCAGACACGATTTATTTCCGACAGGCACGGTCTATCCAAGAACTTGCGAAAAAGGACTTTGAAAATTTGAGGCAAGACAACACCGGTGATGGTGGTGAGCCCAAACCAAAAGTTGCCAGGAGAGGCAGGCCACCTGGCAGCAAGACCATGAAAAAGTCGATTGACTTGGCTCCAGTTGAACGTCTTGGTCCTCAATATTTCTCAGAAACGACTCTTCCCCCTGGAGGAGAGACTTCGAGCTTGTCCAATAGTTACAATTTGAGAAAAGGACCCGCTTCATACAAGTTTAGGACTGCTGATGCATTAAACAGAGCTCCACATGGATCTCTTGGTGGTGATACTAATGCTAACTGGTTGTCTGAATTGGAGAATGAATTTCCGGCTTCAGTATTGAGGAGCGTGCTAAGGTATGGAAAGAAACAGTTTCCAGTAGACGAGAACAGACGTGAAACCTATAGGCAGTCTCTGGCTTCAGAACATGAACCATCTGAACTTACTGGTCTCGAAGGGGAGTGGAACCAACTTATGGCGGTAGGTGTAGCTGCGGAGGAGCATGGTTATGCAAGAAGTATGGCTCGATTTGCTGCAAATCTTGGACCTGTTGCTTGGAAGATTGCTTCTAAGCGGATAGGAAGTGTTTTGCCTATTGGAGTTGAGTTTGGTCCTGGATGGGTAGGAGAAAATGAGTCATCAAGGTTGCAGCAGTTTTCATTCCGTCAGGGAGAGGATAAGGTTCAATGCAACCCTGCATCTGATGACCATAAAGACAGACTTCGATGTCAAAGTACATCAGGCCTAAATTCTGTTGCAGATAGATATTTGCTGCAAAACGGTGTTAACATGGAAAACTGTAGAGAATTCAATTCCCAAAATGGGTTGGCATCACTTAACAGTGGTGTTAGTGGGATACGACCTGTGCCTCCTTTCCAGAATTCCATGATTCACTCTGGGATGTCAAGTTCGACCAACACTTCAGTACCTTCTCATCATCAAATGGTCGGCATGTTTTCAGAGAGGAATATGAACACACAGTCGATGCCTATAGGCGATATTGATTCAAATGAAGCCAGATCAGAAATTTCAAGTAGATCAAGGAATCCCTTAGCCCAAGCACAACCTCAATTGGCGTATGGTGGGGAAACTTCTTGGCAGGGTTTATCGATGAACAATAAACAGGTTTCTTATTCATTACCCCCGGACCTGAATGTTGAATTCGGTGCACCAGGCTCTCCCAGTTCTCTTATTCAAATTGGCATGCCACAGCAACCAGATTTAGCTTTGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

660

Amino Acids

72.78

Weight (kDa)

6.07

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	162 - 241	3.2e-22	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20670 AT1G76380 AT1G76380 AT1G76380
fragaria_vesca	FvH4_5g24560 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400 FvH4_5g25400
malus_domestica	MD06G1010000.v1.1 MD16G1284400.v1.1
prunus_persica	Prupe.5G010200_v2.0.a1
pyrus_communis	pycom06g00820 pycom16g25950
rosa_chinensis	RchiOBHm_Chr7g0215631
rosa_laevigata	RLG00000002637
rosa_multiflora	Rmu_sc0000898.1_g000040 Rmu_sc0007602.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243980
rosa_rugosa	Rorug07G0155700 Rorug07G0155700
rosa_samantha	Rh7AG292100 Rh7BG284700 Rh7CG312100 Rh7DG295500
rosa_wichuraiana	Rw7G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
AasI	GACNNNNNNGTC	1 cut(s)	1470
Acc36I	ACCTGC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	1219
AccI	GTMKAC	1 cut(s)	1125
AccII	CGCG	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	355
AclWI	GGATC	7 cut(s)	347, 363, 376, 533, 546, 621, 1024
AcsI	RAATTY	7 cut(s)	757, 1067, 1492, 1550, 1624, 1770, 1904
AcuI	CTGAAG	3 cut(s)	1062, 1149, 1650
AfaI	GTAC	2 cut(s)	1480, 1671
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	917, 1219, 1566
AgeI	ACCGGT	1 cut(s)	776
AjiI	CACGTC	1 cut(s)	1139
AjnI	CCWGG	5 cut(s)	809, 826, 913, 1357, 1915
AloI	GAACNNNNNNTCC	2 cut(s)	1636, 1668
AluBI	AGCT	6 cut(s)	253, 550, 933, 1007, 1235, 1970
AluI	AGCT	6 cut(s)	253, 550, 933, 1007, 1235, 1970
Alw21I	GWGCWC	2 cut(s)	1009, 1915
Alw26I	GTCTC	3 cut(s)	917, 1161, 1199
Alw44I	GTGCAC	1 cut(s)	1911
AlwI	GGATC	7 cut(s)	347, 363, 376, 533, 546, 621, 1024
AlwNI	CAGNNNCTG	1 cut(s)	1159
Aor13HI	TCCGGA	1 cut(s)	355
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	4 cut(s)	67, 316, 821, 1486
ApaLI	GTGCAC	1 cut(s)	1911
ApeKI	GCWGC	9 cut(s)	109, 112, 174, 550, 831, 1235, 1277, 1393, 1516
ApoI	RAATTY	7 cut(s)	757, 1067, 1492, 1550, 1624, 1770, 1904
AsiGI	ACCGGT	1 cut(s)	776
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	5 cut(s)	99, 143, 179, 234, 236
AspS9I	GGNCC	8 cut(s)	67, 317, 443, 881, 962, 1289, 1355, 1891
AsuC2I	CCSGG	1 cut(s)	1889
AsuHPI	GGTGA	3 cut(s)	791, 800, 1040
AvaII	GGWCC	6 cut(s)	443, 881, 962, 1289, 1355, 1891
BaeGI	GKGCMC	1 cut(s)	1915
BaeI	ACNNNNGTAYC	2 cut(s)	1653, 1686
BamHI	GGATCC	2 cut(s)	368, 538
BanII	GRGCYC	2 cut(s)	795, 1009
BauI	CACGAG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	649
Bbv12I	GWGCWC	2 cut(s)	1009, 1915
BbvI	GCAGC	9 cut(s)	121, 124, 186, 537, 843, 1222, 1264, 1405, 1503
BccI	CCATC	4 cut(s)	577, 776, 1186, 1356
BceAI	ACGGC	2 cut(s)	289, 340
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	5 cut(s)	811, 828, 915, 1359, 1917
BciVI	GTATCC	1 cut(s)	1593
BcnI	CCSGG	1 cut(s)	1889
BcoDI	GTCTC	3 cut(s)	917, 1161, 1199
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	3 cut(s)	1147, 1543, 1734
BfoI	RGCGCY	3 cut(s)	100, 144, 180
BfuAI	ACCTGC	1 cut(s)	421
BfuI	GTATCC	1 cut(s)	1593
BglI	GCCNNNNNGGC	1 cut(s)	324
Bme1390I	CCNGG	6 cut(s)	811, 828, 915, 1359, 1889, 1917
Bme18I	GGWCC	6 cut(s)	443, 881, 962, 1289, 1355, 1891
BmgBI	CACGTC	1 cut(s)	1139
BmgT120I	GGNCC	8 cut(s)	67, 317, 443, 881, 962, 1289, 1355, 1891
BmrFI	CCNGG	6 cut(s)	811, 828, 915, 1359, 1889, 1917
BmrI	ACTGGG	1 cut(s)	1920
BmsI	GCATC	5 cut(s)	20, 982, 1451, 1583, 1719
BmuI	ACTGGG	1 cut(s)	1920
BpiI	GAAGAC	1 cut(s)	649
BpmI	CTGGAG	4 cut(s)	74, 89, 849, 936
Bpu10I	CCTNAGC	2 cut(s)	1097, 1795
BpuMI	CCSGG	1 cut(s)	1889
Bsa29I	ATCGAT	1 cut(s)	1853
BsaI	GGTCTC	1 cut(s)	1199
BsaJI	CCNNGG	3 cut(s)	259, 913, 1887
BsaWI	WCCGGW	2 cut(s)	355, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	917, 1219, 1566
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	6 cut(s)	615, 866, 1049, 1121, 1195, 1926
Bse3DI	GCAATG	1 cut(s)	684
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	5 cut(s)	811, 828, 915, 1359, 1917
BseCI	ATCGAT	1 cut(s)	1853
BseDI	CCNNGG	3 cut(s)	259, 913, 1887
BseGI	GGATG	3 cut(s)	483, 1367, 1650
BseLI	CCNNNNNNNGG	3 cut(s)	917, 1219, 1566
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	6 cut(s)	615, 866, 1049, 1121, 1195, 1926
BsePI	GCGCGC	1 cut(s)	232
BseRI	GAGGAG	7 cut(s)	183, 186, 245, 248, 933, 1102, 1256
BseSI	GKGCMC	1 cut(s)	1915
BseXI	GCAGC	9 cut(s)	121, 124, 186, 537, 843, 1222, 1264, 1405, 1503
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	69, 318, 823, 1488
BshTI	ACCGGT	1 cut(s)	776
BshVI	ATCGAT	1 cut(s)	1853
BsiHKAI	GWGCWC	2 cut(s)	1009, 1915
BsiSI	CCGG	5 cut(s)	315, 356, 777, 1073, 1889
BslFI	GGGAC	2 cut(s)	429, 439
BslI	CCNNNNNNNGG	3 cut(s)	917, 1219, 1566
BsmAI	GTCTC	3 cut(s)	917, 1161, 1199
BsmFI	GGGAC	2 cut(s)	429, 439
BsnI	GGCC	4 cut(s)	69, 318, 823, 1488
Bso31I	GGTCTC	1 cut(s)	1199
Bsp1286I	GDGCHC	3 cut(s)	795, 1009, 1915
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
BspANI	GGCC	4 cut(s)	69, 318, 823, 1488
BspCNI	CTCAG	1 cut(s)	908
BspDI	ATCGAT	1 cut(s)	1853
BspEI	TCCGGA	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	7 cut(s)	347, 363, 376, 533, 546, 621, 1024
BspQI	GCTCTTC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	1199
BsrDI	GCAATG	1 cut(s)	684
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	6 cut(s)	615, 866, 1049, 1121, 1195, 1926
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	3 cut(s)	259, 913, 1887
BssHII	GCGCGC	1 cut(s)	232
BssMI	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
BssSI	CACGAG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	513
Bst2UI	CCWGG	5 cut(s)	811, 828, 915, 1359, 1917
Bst4CI	ACNGT	9 cut(s)	410, 598, 642, 723, 1116, 1526, 1544, 1586, 1725
Bst6I	CTCTTC	2 cut(s)	540, 912
BstC8I	GCNNGC	5 cut(s)	157, 234, 821, 1094, 1949
BstDEI	CTNAG	4 cut(s)	895, 1097, 1314, 1795
BstF5I	GGATG	3 cut(s)	483, 1367, 1650
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	3 cut(s)	100, 144, 180
BstHHI	GCGC	5 cut(s)	99, 143, 179, 234, 236
BstKTI	GATC	9 cut(s)	88, 355, 366, 371, 541, 616, 1019, 1766, 1784
BstMAI	GTCTC	3 cut(s)	917, 1161, 1199
BstMBI	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 152, 161, 324, 1274
BstNI	CCWGG	5 cut(s)	811, 828, 915, 1359, 1917
BstNSI	RCATGY	2 cut(s)	1699, 1951
BstSCI	CCNGG	6 cut(s)	809, 826, 913, 1357, 1887, 1915
BstSFI	CTRYAG	3 cut(s)	1147, 1543, 1734
BstSLI	GKGCMC	1 cut(s)	1915
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	9 cut(s)	121, 124, 186, 537, 843, 1222, 1264, 1405, 1503
BstV2I	GAAGAC	1 cut(s)	649
BstX2I	RGATCY	3 cut(s)	368, 538, 1016
BstYI	RGATCY	3 cut(s)	368, 538, 1016
Bsu15I	ATCGAT	1 cut(s)	1853
BsuI	GTATCC	1 cut(s)	1593
BsuRI	GGCC	4 cut(s)	69, 318, 823, 1488
BsuTUI	ATCGAT	1 cut(s)	1853
BtrI	CACGTC	1 cut(s)	1139
BtsCI	GGATG	3 cut(s)	483, 1367, 1650
BtsIMutI	CAGTG	1 cut(s)	1591
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	5 cut(s)	157, 234, 821, 1094, 1949
CaiI	CAGNNNCTG	1 cut(s)	1159
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	5 cut(s)	99, 143, 179, 234, 236
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	8 cut(s)	67, 317, 443, 881, 962, 1289, 1355, 1891
ClaI	ATCGAT	1 cut(s)	1853
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	1479, 1670
CspAI	ACCGGT	1 cut(s)	776
CviQI	GTAC	2 cut(s)	1479, 1670
DdeI	CTNAG	4 cut(s)	895, 1097, 1314, 1795
DpnI	GATC	9 cut(s)	87, 354, 365, 370, 540, 615, 1018, 1765, 1783
DpnII	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
DrdI	GACNNNNNNGTC	1 cut(s)	1470
DseDI	GACNNNNNNGTC	1 cut(s)	1470
Eam1104I	CTCTTC	2 cut(s)	540, 912
EarI	CTCTTC	2 cut(s)	540, 912
Ecl136II	GAGCTC	1 cut(s)	1007
Eco147I	AGGCCT	1 cut(s)	1488
Eco24I	GRGCYC	2 cut(s)	795, 1009
Eco31I	GGTCTC	1 cut(s)	1199
Eco32I	GATATC	1 cut(s)	666
Eco47I	GGWCC	6 cut(s)	443, 881, 962, 1289, 1355, 1891
Eco47III	AGCGCT	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	1007
Eco57I	CTGAAG	3 cut(s)	1062, 1149, 1650
EcoICRI	GAGCTC	1 cut(s)	1007
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRI	GAATTC	3 cut(s)	1550, 1624, 1904
EcoRII	CCWGG	5 cut(s)	809, 826, 913, 1357, 1915
EcoRV	GATATC	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	2 cut(s)	795, 1009
FalI	AAGNNNNNCTT	2 cut(s)	1449, 1481
FaqI	GGGAC	2 cut(s)	429, 439
FauI	CCCGC	3 cut(s)	164, 169, 973
FblI	GTMKAC	1 cut(s)	1125
FokI	GGATG	3 cut(s)	470, 1374, 1657
FriOI	GRGCYC	2 cut(s)	795, 1009
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	5 cut(s)	98, 142, 178, 233, 235
GsuI	CTGGAG	4 cut(s)	74, 89, 849, 936
HaeII	RGCGCY	3 cut(s)	100, 144, 180
HaeIII	GGCC	4 cut(s)	69, 318, 823, 1488
HapII	CCGG	5 cut(s)	315, 356, 777, 1073, 1889
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	5 cut(s)	99, 143, 179, 234, 236
Hin6I	GCGC	5 cut(s)	97, 141, 177, 232, 234
HinP1I	GCGC	5 cut(s)	97, 141, 177, 232, 234
HincII	GTYRAC	1 cut(s)	1531
HindII	GTYRAC	1 cut(s)	1531
HinfI	GANTC	7 cut(s)	264, 332, 904, 1379, 1633, 1748, 1789
HpaI	GTTAAC	1 cut(s)	1531
HpaII	CCGG	5 cut(s)	315, 356, 777, 1073, 1889
HphI	GGTGA	3 cut(s)	791, 800, 1040
Hpy166II	GTNNAC	3 cut(s)	1126, 1531, 1913
Hpy188III	TCNNGA	8 cut(s)	83, 91, 356, 542, 563, 661, 1196, 1621
Hpy8I	GTNNAC	3 cut(s)	1126, 1531, 1913
Hpy99I	CGWCG	9 cut(s)	25, 218, 221, 224, 227, 230, 347, 350, 353
HpyAV	CCTTC	4 cut(s)	58, 84, 1193, 1683
HpyCH4III	ACNGT	9 cut(s)	410, 598, 642, 723, 1116, 1526, 1544, 1586, 1725
HpyCH4IV	ACGT	2 cut(s)	874, 1138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 152, 161, 324, 1274
HpyF3I	CTNAG	4 cut(s)	895, 1097, 1314, 1795
HpySE526I	ACGT	2 cut(s)	874, 1138
HspAI	GCGC	5 cut(s)	97, 141, 177, 232, 234
Kpn2I	TCCGGA	1 cut(s)	355
KspAI	GTTAAC	1 cut(s)	1531
Kzo9I	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	9 cut(s)	196, 258, 332, 529, 620, 868, 1012, 1089, 1243
Lsp1109I	GCAGC	9 cut(s)	121, 124, 186, 537, 843, 1222, 1264, 1405, 1503
LweI	GCATC	5 cut(s)	20, 982, 1451, 1583, 1719
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	2 cut(s)	874, 1138
MaeIII	GTNAC	1 cut(s)	944
MalI	GATC	9 cut(s)	87, 354, 365, 370, 540, 615, 1018, 1765, 1783
MboI	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
MboII	GAAGA	7 cut(s)	73, 253, 557, 649, 660, 899, 1315
MfeI	CAATTG	1 cut(s)	1814
MflI	RGATCY	3 cut(s)	368, 538, 1016
MhlI	GDGCHC	3 cut(s)	795, 1009, 1915
MlyI	GAGTC	2 cut(s)	898, 1388
MmeI	TCCRAC	1 cut(s)	736
Mph1103I	ATGCAT	1 cut(s)	997
MroI	TCCGGA	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	3 cut(s)	998, 1530, 1581
MslI	CAYNNNNRTG	1 cut(s)	1251
MspI	CCGG	5 cut(s)	315, 356, 777, 1073, 1889
MspR9I	CCNGG	6 cut(s)	811, 828, 915, 1359, 1889, 1917
MunI	CAATTG	1 cut(s)	1814
MvaI	CCWGG	5 cut(s)	811, 828, 915, 1359, 1917
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	5 cut(s)	149, 152, 161, 324, 1274
NciI	CCSGG	1 cut(s)	1889
NdeII	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	2 cut(s)	1699, 1951
PaeI	GCATGC	1 cut(s)	1951
PagI	TCATGA	1 cut(s)	562
PaqCI	CACCTGC	1 cut(s)	421
PauI	GCGCGC	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	1488
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	5 cut(s)	26, 213, 219, 222, 225
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	5 cut(s)	264, 332, 1633, 1748, 1789
PflFI	GACNNNGTC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	1219
PfoI	TCCNGGA	1 cut(s)	1357
PinAI	ACCGGT	1 cut(s)	776
PleI	GAGTC	2 cut(s)	898, 1387
PpsI	GAGTC	2 cut(s)	898, 1387
PpuMI	RGGWCCY	1 cut(s)	962
Psp124BI	GAGCTC	1 cut(s)	1009
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	5 cut(s)	809, 826, 913, 1357, 1915
PspGI	CCWGG	5 cut(s)	809, 826, 913, 1357, 1915
PspPI	GGNCC	8 cut(s)	67, 317, 443, 881, 962, 1289, 1355, 1891
PspPPI	RGGWCCY	1 cut(s)	962
PstNI	CAGNNNCTG	1 cut(s)	1159
PsuI	RGATCY	3 cut(s)	368, 538, 1016
PsyI	GACNNNGTC	1 cut(s)	298
PteI	GCGCGC	1 cut(s)	232
RsaI	GTAC	2 cut(s)	1480, 1671
RsaNI	GTAC	2 cut(s)	1479, 1670
RseI	CAYNNNNRTG	1 cut(s)	1251
SacI	GAGCTC	1 cut(s)	1009
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	998, 1530, 1581
Sau3AI	GATC	9 cut(s)	85, 352, 363, 368, 538, 613, 1016, 1763, 1781
Sau96I	GGNCC	8 cut(s)	67, 317, 443, 881, 962, 1289, 1355, 1891
SchI	GAGTC	2 cut(s)	898, 1388
ScrFI	CCNGG	6 cut(s)	811, 828, 915, 1359, 1889, 1917
SduI	GDGCHC	3 cut(s)	795, 1009, 1915
SfaNI	GCATC	5 cut(s)	20, 982, 1451, 1583, 1719
SfcI	CTRYAG	3 cut(s)	1147, 1543, 1734
SgrAI	CRCCGGYG	1 cut(s)	776
SinI	GGWCC	6 cut(s)	443, 881, 962, 1289, 1355, 1891
SmiMI	CAYNNNNRTG	1 cut(s)	1251
SphI	GCATGC	1 cut(s)	1951
SseBI	AGGCCT	1 cut(s)	1488
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	1009
StuI	AGGCCT	1 cut(s)	1488
StyD4I	CCNGG	6 cut(s)	809, 826, 913, 1357, 1887, 1915
TaaI	ACNGT	9 cut(s)	410, 598, 642, 723, 1116, 1526, 1544, 1586, 1725
TaiI	ACGT	2 cut(s)	877, 1141
TaqI	TCGA	9 cut(s)	84, 851, 929, 1197, 1270, 1468, 1655, 1727, 1853
TatI	WGTACW	1 cut(s)	1478
TauI	GCSGC	5 cut(s)	146, 149, 152, 155, 174
TfiI	GAWTC	5 cut(s)	264, 332, 1633, 1748, 1789
Tru1I	TTAA	3 cut(s)	998, 1530, 1581
Tru9I	TTAA	3 cut(s)	998, 1530, 1581
TscAI	CASTG	1 cut(s)	1591
TseI	GCWGC	9 cut(s)	109, 112, 174, 550, 831, 1235, 1277, 1393, 1516
TspGWI	ACGGA	1 cut(s)	1397
TspRI	CASTG	1 cut(s)	1591
Tth111I	GACNNNGTC	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	1219
VneI	GTGCAC	1 cut(s)	1911
VpaK11BI	GGWCC	6 cut(s)	443, 881, 962, 1289, 1355, 1891
XapI	RAATTY	7 cut(s)	757, 1067, 1492, 1550, 1624, 1770, 1904
XceI	RCATGY	2 cut(s)	1699, 1951
XmiI	GTMKAC	1 cut(s)	1125
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.