MD17G1034700.v1.1

Protein farnesyltransferase subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
2502179 .. 2506097
3919 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1034700.v1.1.491

Sequence Viewer

Length: 1317 bp
ATGGAGAGTCCGGTCGCCACCGTGACTCAGCGCGATCAGTGGATGGTGGAGAGTCAGGTCTTTCGGATCTACGAACTCTTCGGCAACCTCCCACCCAAAGCCCAATCCGTCATGATTGAGCTTCAGCGTGATAGTCACATAGAGTATTTAACCAGAGGCCTCAGAGGACTCCCTTCCTCCTTCTGCGTTTTGGATGCCAATCGGCCTTGGCTTTGTTACTGGATTCTGCACTCATTGGCTTTGCTAGAGGAGTCTGTTGACGATGAACTGGAACATAATGCCATTGACTTCCTAAGCCGTTGTCAGGACCCAGAGGGTGGATATAGTGGTGGACCTGGACAGATGCCACATCTTGCAACGACTTACGCTGCAGTTAATGCACTTATAACTCTCGGTGGTGAGGAGGCGCTTTCATCAATTAATAGAGGTAAAATTTACAAGTTTTTGCAGCAAATGAAACATCCAGGTGGAGGCTTCAGGATGCATGATGGTGGAGAAATTGATGTCCGGGCTTGCTACACTGCGGTTTCTGTAGCAAGCATTTTGAACATTTTGGATGATGAACTGGTTCATAATGTTGGAAGCTTCATCTTAAGTTGTCAGACGTATGAAGGTGGTATTTCTGGGGAGCCTGGTGCTGAAGCCCATGGTGGGTACACTTTTTGTGGGGTAGCTACAATGGTTCTAATCAATCAGGTCAATCGTTTGGACTTGCCTGGATTAATTGATTGGTTGACATTTCGACAAGGGAAAGAGTGTGGATTTCAGGGGAGGACTAATAAATTGGTCGACGGTTGCTACTCCTTCTGGCAGGGAGGTGTTTTTCCAATATTACAAAGAGTACGTTCAACTATTGATGAACAACTCGCACTTCGGGATGATGGAGGACAGTGTACCAAGGATGGCGCGCAGACTTCTACAACATCTAATATATCTAAAGAGGGGAAAATTTTTGAAGGCACTACATCACCAGGAGTGAATTTGAATGACATCGGCTATGATTTTGTCAAGAGGCCTGTAATATCGGAGCCACTTTTTCACAGCATCGCATTGCAACAATATATACTTTTATGCTCACAGGAGGAGGAGGGTGGAATGAAAGACAAACCCGGGAAATCGAGAGACTTTTACCACACATGCTACTGTCTAAGTGGACTTTCTGTATGTCAACACATATGGTCGAACGACGAAGACTCCCCGGTGTTGCCTAGGGCAGTCATGGGTCCCTATTCCAATTTGTTGGAACCTATTCATCCCCTCTTCAATGTTGTCCTGGAAAAATACCATGAAGCAAGGGAATTCTTTACAAGAGACTGA

Protein Analysis

439

Amino Acids

48.7

Weight (kDa)

5.06

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 41 - 423 3.4e-113 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 317
AccI GTMKAC 1 cut(s) 789
AccII CGCG 2 cut(s) 33, 908
AciI CCGC 1 cut(s) 524
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 4 cut(s) 432, 948, 979, 1298
AcuI CTGAAG 3 cut(s) 107, 460, 660
AfaI GTAC 3 cut(s) 656, 843, 895
AfiI CCNNNNNNNGG 4 cut(s) 304, 317, 470, 651
AflII CTTAAG 1 cut(s) 592
AgsI TTSAA 5 cut(s) 547, 849, 956, 985, 1264
AjnI CCWGG 6 cut(s) 334, 463, 631, 715, 970, 1272
AluBI AGCT 3 cut(s) 121, 585, 674
AluI AGCT 3 cut(s) 121, 585, 674
Alw26I GTCTC 2 cut(s) 1116, 1305
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 1109
AoxI GGCC 3 cut(s) 157, 203, 1013
ApeKI GCWGC 2 cut(s) 368, 448
ApoI RAATTY 4 cut(s) 432, 948, 979, 1298
AseI ATTAAT 2 cut(s) 420, 722
Asp700I GAANNNNTTC 2 cut(s) 567, 1248
AspA2I CCTAGG 1 cut(s) 1208
AspLEI GCGC 4 cut(s) 33, 409, 908, 910
AspS9I GGNCC 3 cut(s) 307, 332, 1223
AsuC2I CCSGG 4 cut(s) 509, 1110, 1111, 1199
AsuHPI GGTGA 2 cut(s) 410, 960
AvaI CYCGRG 1 cut(s) 1109
AvaII GGWCC 3 cut(s) 307, 332, 1223
AvrII CCTAGG 1 cut(s) 1208
BbsI GAAGAC 1 cut(s) 1197
BbvI GCAGC 2 cut(s) 355, 460
BccI CCATC 4 cut(s) 37, 482, 875, 896
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 6 cut(s) 336, 465, 633, 717, 972, 1274
BcnI CCSGG 4 cut(s) 509, 1110, 1111, 1199
BcoDI GTCTC 2 cut(s) 1116, 1305
BfaI CTAG 2 cut(s) 245, 1209
BfmI CTRYAG 2 cut(s) 369, 531
BfoI RGCGCY 1 cut(s) 410
BfrI CTTAAG 1 cut(s) 592
BisI GCNGC 2 cut(s) 369, 449
BlnI CCTAGG 1 cut(s) 1208
BlsI GCNGC 2 cut(s) 370, 450
Bme18I GGWCC 3 cut(s) 307, 332, 1223
BmeT110I CYCGRG 1 cut(s) 1109
BmgT120I GGNCC 3 cut(s) 307, 332, 1223
BmiI GGNNCC 6 cut(s) 309, 630, 1029, 1224, 1225, 1245
BmsI GCATC 4 cut(s) 184, 333, 471, 1053
BpiI GAAGAC 1 cut(s) 1197
Bpu10I CCTNAGC 1 cut(s) 293
BpuMI CCSGG 4 cut(s) 509, 1110, 1111, 1199
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 6 cut(s) 206, 646, 897, 1109, 1197, 1208
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 1178, 1208
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 317, 470, 651
Bse1I ACTGG 3 cut(s) 224, 273, 570
Bse3DI GCAATG 1 cut(s) 1049
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 6 cut(s) 336, 465, 633, 717, 972, 1274
BseDI CCNNGG 6 cut(s) 206, 646, 897, 1109, 1197, 1208
BseGI GGATG 8 cut(s) 48, 199, 460, 486, 562, 883, 907, 1252
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 4 cut(s) 304, 317, 470, 651
BseMI GCAATG 1 cut(s) 1049
BseMII CTCAG 2 cut(s) 41, 175
BseNI ACTGG 3 cut(s) 224, 273, 570
BsePI GCGCGC 1 cut(s) 906
BseRI GAGGAG 4 cut(s) 263, 416, 1097, 1100
BseXI GCAGC 2 cut(s) 355, 460
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 2 cut(s) 33, 908
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 3 cut(s) 159, 205, 1015
BsiEI CGRYCG 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 1109
BsiSI CCGG 4 cut(s) 11, 508, 1110, 1199
BslFI GGGAC 1 cut(s) 1209
BslI CCNNNNNNNGG 4 cut(s) 304, 317, 470, 651
BsmAI GTCTC 2 cut(s) 1116, 1305
BsmFI GGGAC 1 cut(s) 1209
BsnI GGCC 3 cut(s) 159, 205, 1015
BsoBI CYCGRG 1 cut(s) 1109
Bsp143I GATC 2 cut(s) 34, 66
Bsp19I CCATGG 1 cut(s) 646
BspACI CCGC 1 cut(s) 524
BspANI GGCC 3 cut(s) 159, 205, 1015
BspCNI CTCAG 2 cut(s) 40, 174
BspFNI CGCG 2 cut(s) 33, 908
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 6 cut(s) 309, 630, 1029, 1224, 1225, 1245
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 592
BsrDI GCAATG 1 cut(s) 1049
BsrI ACTGG 3 cut(s) 224, 273, 570
BssECI CCNNGG 6 cut(s) 206, 646, 897, 1109, 1197, 1208
BssHII GCGCGC 1 cut(s) 906
BssMI GATC 2 cut(s) 34, 66
BssT1I CCWWGG 4 cut(s) 206, 646, 897, 1208
Bst2UI CCWGG 6 cut(s) 336, 465, 633, 717, 972, 1274
Bst4CI ACNGT 4 cut(s) 22, 794, 891, 1145
Bst6I CTCTTC 2 cut(s) 83, 1265
BstAFI CTTAAG 1 cut(s) 592
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 514, 538, 908
BstDEI CTNAG 4 cut(s) 27, 161, 293, 1148
BstDSI CCRYGG 1 cut(s) 646
BstF5I GGATG 8 cut(s) 48, 199, 460, 486, 562, 883, 907, 1252
BstFNI CGCG 2 cut(s) 33, 908
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 4 cut(s) 33, 409, 908, 910
BstKTI GATC 2 cut(s) 37, 69
BstMAI GTCTC 2 cut(s) 1116, 1305
BstMBI GATC 2 cut(s) 34, 66
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 6 cut(s) 336, 465, 633, 717, 972, 1274
BstNSI RCATGY 1 cut(s) 1140
BstSFI CTRYAG 2 cut(s) 369, 531
BstUI CGCG 2 cut(s) 33, 908
BstV1I GCAGC 2 cut(s) 355, 460
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 1240
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 3 cut(s) 159, 205, 1015
BtgI CCRYGG 1 cut(s) 646
BtgZI GCGATG 1 cut(s) 1030
BtsCI GGATG 8 cut(s) 48, 199, 460, 486, 562, 883, 907, 1252
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 3 cut(s) 44, 519, 896
Cac8I GCNNGC 3 cut(s) 514, 538, 908
CciI TCATGA 1 cut(s) 111
CfoI GCGC 4 cut(s) 33, 409, 908, 910
Cfr13I GGNCC 3 cut(s) 307, 332, 1223
Cfr9I CCCGGG 1 cut(s) 1109
Csp6I GTAC 3 cut(s) 655, 842, 894
CviAII CATG 6 cut(s) 112, 485, 647, 1137, 1219, 1286
CviQI GTAC 3 cut(s) 655, 842, 894
DdeI CTNAG 4 cut(s) 27, 161, 293, 1148
DpnI GATC 2 cut(s) 36, 68
DpnII GATC 2 cut(s) 34, 66
Eam1104I CTCTTC 2 cut(s) 83, 1265
EarI CTCTTC 2 cut(s) 83, 1265
Eco130I CCWWGG 4 cut(s) 206, 646, 897, 1208
Eco147I AGGCCT 2 cut(s) 159, 1015
Eco47I GGWCC 3 cut(s) 307, 332, 1223
Eco57I CTGAAG 3 cut(s) 107, 460, 660
Eco88I CYCGRG 1 cut(s) 1109
EcoO109I RGGNCCY 2 cut(s) 307, 1223
EcoRI GAATTC 1 cut(s) 1298
EcoRII CCWGG 6 cut(s) 334, 463, 631, 715, 970, 1272
EcoT14I CCWWGG 4 cut(s) 206, 646, 897, 1208
EcoT22I ATGCAT 1 cut(s) 486
ErhI CCWWGG 4 cut(s) 206, 646, 897, 1208
FaeI CATG 6 cut(s) 115, 488, 650, 1140, 1222, 1289
FaqI GGGAC 1 cut(s) 1209
FatI CATG 6 cut(s) 111, 484, 646, 1136, 1218, 1285
FauNDI CATATG 1 cut(s) 1175
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 2 cut(s) 369, 449
FokI GGATG 8 cut(s) 55, 206, 447, 493, 569, 890, 914, 1239
Fsp4HI GCNGC 2 cut(s) 369, 449
FspBI CTAG 2 cut(s) 245, 1209
GlaI GCGC 4 cut(s) 32, 408, 907, 909
GluI GCNGC 2 cut(s) 369, 449
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 3 cut(s) 159, 205, 1015
HapII CCGG 4 cut(s) 11, 508, 1110, 1199
HhaI GCGC 4 cut(s) 33, 409, 908, 910
Hin1II CATG 6 cut(s) 115, 488, 650, 1140, 1222, 1289
Hin6I GCGC 4 cut(s) 31, 407, 906, 908
HinP1I GCGC 4 cut(s) 31, 407, 906, 908
HincII GTYRAC 4 cut(s) 259, 735, 790, 1169
HindII GTYRAC 4 cut(s) 259, 735, 790, 1169
HindIII AAGCTT 1 cut(s) 583
HinfI GANTC 7 cut(s) 7, 25, 52, 168, 223, 251, 1193
HpaII CCGG 4 cut(s) 11, 508, 1110, 1199
HphI GGTGA 2 cut(s) 410, 960
Hpy166II GTNNAC 8 cut(s) 259, 332, 657, 735, 790, 894, 1154, 1169
Hpy188I TCNGA 4 cut(s) 66, 164, 603, 1027
Hpy188III TCNNGA 6 cut(s) 112, 305, 478, 875, 1009, 1119
Hpy8I GTNNAC 8 cut(s) 259, 332, 657, 735, 790, 894, 1154, 1169
Hpy99I CGWCG 2 cut(s) 794, 1190
HpyAV CCTTC 5 cut(s) 183, 190, 605, 814, 950
HpyCH4III ACNGT 4 cut(s) 22, 794, 891, 1145
HpyCH4IV ACGT 2 cut(s) 605, 844
HpyCH4V TGCA 7 cut(s) 229, 356, 371, 380, 448, 484, 1054
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 4 cut(s) 27, 161, 293, 1148
HpySE526I ACGT 2 cut(s) 605, 844
Hsp92II CATG 6 cut(s) 115, 488, 650, 1140, 1222, 1289
HspAI GCGC 4 cut(s) 31, 407, 906, 908
KflI GGGWCCC 1 cut(s) 1223
Kzo9I GATC 2 cut(s) 34, 66
LmnI GCTCC 2 cut(s) 628, 1027
Lsp1109I GCAGC 2 cut(s) 355, 460
LweI GCATC 4 cut(s) 184, 333, 471, 1053
MaeI CTAG 2 cut(s) 245, 1209
MaeII ACGT 2 cut(s) 605, 844
MaeIII GTNAC 3 cut(s) 22, 134, 215
MalI GATC 2 cut(s) 36, 68
MboI GATC 2 cut(s) 34, 66
MboII GAAGA 3 cut(s) 70, 1202, 1252
MflI RGATCY 1 cut(s) 66
MluCI AATT 9 cut(s) 417, 432, 498, 723, 782, 948, 979, 1234, 1298
MlyI GAGTC 6 cut(s) 16, 19, 61, 162, 260, 1187
MmeI TCCRAC 2 cut(s) 559, 1221
Mph1103I ATGCAT 1 cut(s) 486
MroXI GAANNNNTTC 2 cut(s) 567, 1248
MseI TTAA 5 cut(s) 149, 375, 420, 593, 722
MslI CAYNNNNRTG 2 cut(s) 465, 489
MspCI CTTAAG 1 cut(s) 592
MspI CCGG 4 cut(s) 11, 508, 1110, 1199
MvaI CCWGG 6 cut(s) 336, 465, 633, 717, 972, 1274
MvnI CGCG 2 cut(s) 33, 908
MwoI GCNNNNNNNGC 1 cut(s) 377
NciI CCSGG 4 cut(s) 509, 1110, 1111, 1199
NcoI CCATGG 1 cut(s) 646
NdeI CATATG 1 cut(s) 1175
NdeII GATC 2 cut(s) 34, 66
NlaIII CATG 6 cut(s) 115, 488, 650, 1140, 1222, 1289
NlaIV GGNNCC 6 cut(s) 309, 630, 1029, 1224, 1225, 1245
NmuCI GTSAC 2 cut(s) 22, 134
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 1 cut(s) 1140
PagI TCATGA 1 cut(s) 111
PauI GCGCGC 1 cut(s) 906
PceI AGGCCT 2 cut(s) 159, 1015
PdmI GAANNNNTTC 2 cut(s) 567, 1248
PfeI GAWTC 1 cut(s) 223
PflMI CCANNNNNTGG 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 1272
PkrI GCNGC 2 cut(s) 370, 450
PleI GAGTC 6 cut(s) 15, 19, 60, 162, 259, 1187
PpsI GAGTC 6 cut(s) 15, 19, 60, 162, 259, 1187
PpuMI RGGWCCY 2 cut(s) 307, 1223
PshBI ATTAAT 2 cut(s) 420, 722
PsiI TTATAA 1 cut(s) 386
Psp5II RGGWCCY 2 cut(s) 307, 1223
Psp6I CCWGG 6 cut(s) 334, 463, 631, 715, 970, 1272
PspGI CCWGG 6 cut(s) 334, 463, 631, 715, 970, 1272
PspN4I GGNNCC 6 cut(s) 309, 630, 1029, 1224, 1225, 1245
PspPI GGNCC 3 cut(s) 307, 332, 1223
PspPPI RGGWCCY 2 cut(s) 307, 1223
PstI CTGCAG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 66
PteI GCGCGC 1 cut(s) 906
RsaI GTAC 3 cut(s) 656, 843, 895
RsaNI GTAC 3 cut(s) 655, 842, 894
RseI CAYNNNNRTG 2 cut(s) 465, 489
SalI GTCGAC 1 cut(s) 788
SaqAI TTAA 5 cut(s) 149, 375, 420, 593, 722
SatI GCNGC 2 cut(s) 369, 449
Sau3AI GATC 2 cut(s) 34, 66
Sau96I GGNCC 3 cut(s) 307, 332, 1223
SchI GAGTC 6 cut(s) 16, 19, 61, 162, 260, 1187
SfaNI GCATC 4 cut(s) 184, 333, 471, 1053
SfcI CTRYAG 2 cut(s) 369, 531
SinI GGWCC 3 cut(s) 307, 332, 1223
SmaI CCCGGG 1 cut(s) 1111
SmiMI CAYNNNNRTG 2 cut(s) 465, 489
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 9 cut(s) 417, 432, 498, 723, 782, 948, 979, 1234, 1298
SseBI AGGCCT 2 cut(s) 159, 1015
SsiI CCGC 1 cut(s) 524
SspI AATATT 1 cut(s) 831
SspMI CTAG 2 cut(s) 245, 1209
StuI AGGCCT 2 cut(s) 159, 1015
StyI CCWWGG 4 cut(s) 206, 646, 897, 1208
TaaI ACNGT 4 cut(s) 22, 794, 891, 1145
TaiI ACGT 2 cut(s) 608, 847
TaqI TCGA 4 cut(s) 742, 789, 1118, 1181
TasI AATT 9 cut(s) 417, 432, 498, 723, 782, 948, 979, 1234, 1298
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 5 cut(s) 149, 375, 420, 593, 722
Tru9I TTAA 5 cut(s) 149, 375, 420, 593, 722
TscAI CASTG 3 cut(s) 44, 526, 896
TseFI GTSAC 2 cut(s) 22, 134
TseI GCWGC 2 cut(s) 368, 448
Tsp45I GTSAC 2 cut(s) 22, 134
TspGWI ACGGA 1 cut(s) 97
TspMI CCCGGG 1 cut(s) 1109
TspRI CASTG 3 cut(s) 44, 526, 896
Van91I CCANNNNNTGG 1 cut(s) 317
Vha464I CTTAAG 1 cut(s) 592
VpaK11BI GGWCC 3 cut(s) 307, 332, 1223
VspI ATTAAT 2 cut(s) 420, 722
XapI RAATTY 4 cut(s) 432, 948, 979, 1298
XceI RCATGY 1 cut(s) 1140
XmaI CCCGGG 1 cut(s) 1109
XmaJI CCTAGG 1 cut(s) 1208
XmiI GTMKAC 1 cut(s) 789
XmnI GAANNNNTTC 2 cut(s) 567, 1248
XspI CTAG 2 cut(s) 245, 1209
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.