Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030144.1

Orthogroup ID

OG0009107

Physical Location & Seq

Genomic Coordinates Reverse (-)

2033 .. 7228

Gene Structure 5196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030144.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggagttcccagtcgcaacgaagactcaacacgagcaatggacggtcgagaatctggtcttccggaaatacaatctcttcgaggacctcccccaccacgcccaaaccctaatgctggaacttcggcgggatgagcacatagagtacttgatgagaggtctgagaggtctgcctgcttcgttttcagttttggatgccaacagtcgaccatggatgtgttactggattttgcactcattggctttactgggagagttggttgacgatgaactggaaaataacaccattgacttccttagccggtgtcaggacccaaatggtggatatggcggcggacctggacagatgccacatcttgcaacaacttatgctgcagtcaattcactgattactctgggtggtcataaagctctttcatcaattaatagacgtgaactgtacacgtttctgcggcgaatgaaacaaccaagcgggggcttcaggatgcatgatgctggagaaattgatgttcgggcttgctacactgccatttctgtagcaagtgttttgaacattttggatcacgaactggttgataatgttggaagttacatcttaagttgtcagacttatgaaggtggtatatctggggaacctggttctgaagctcatggtgggtacaccttttgtgggctggcaacaatgattctgatcaatgaggtcaattgtttggacttgcctagactaattgattggttggtatttcgacaagggaaggaatgtggatttcaggggaggactaataagttagttgatggttgctactctttctggcagggaggtgcatttgcattattgcaaagaataccttcagttagtgaggagcaaattgtgataccggatgtgggacactgcaatttggatacctcacacacttctacaacatctcgtatatctgaagtggacaacagttctgaaggtacttcatctcaggttgatgacaccagaggttttagccaggaagggttgaaggttccctttccagtgaattacaatgatattggatatgattttatcaacagaagtgtagaaatgaagccccttttccatgccattgcattgcagcgttctatggttttctgctgcactactaactttgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

380

Amino Acids

42.47

Weight (kDa)

5.21

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40280 AT5G40280
fragaria_vesca	FvH4_6g50640
malus_domestica	MD09G1034200.v1.1 MD17G1034700.v1.1
prunus_persica	Prupe.3G284100_v2.0.a1 Prupe.6G347800_v2.0.a1 Prupe.6G347800_v2.0.a1
pyrus_communis	pycom111g02720 pycom17g03200
rosa_chinensis	RchiOBHm_Chr2g0171441
rosa_laevigata	RLG00000022014
rosa_multiflora	Rmu_sc0030144.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080650
rosa_rugosa	Rorug02G0554300.1 Rorug02G0554400
rosa_samantha	Rh2AG628600 Rh2BG639000 Rh2CG607700 Rh2DG650100 Rh2DG656100
rosa_wichuraiana	Rw2G052070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	205
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	5 cut(s)	127, 330, 333, 451, 471
AclWI	GGATC	1 cut(s)	567
AcuI	CTGAAG	5 cut(s)	463, 663, 834, 957, 975
AfaI	GTAC	4 cut(s)	146, 440, 659, 961
AfiI	CCNNNNNNNGG	6 cut(s)	115, 307, 320, 473, 669, 884
AflII	CTTAAG	1 cut(s)	595
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	550, 1009
AjiI	CACGTC	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	337, 634, 996
AluBI	AGCT	2 cut(s)	410, 647
AluI	AGCT	2 cut(s)	410, 647
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	567
Aor13HI	TCCGGA	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	371, 1102, 1122
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	847
AspS9I	GGNCC	3 cut(s)	85, 310, 335
AvaII	GGWCC	3 cut(s)	85, 310, 335
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	29, 52
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	358, 1109, 1114
BccI	CCATC	1 cut(s)	788
BciT130I	CCWGG	3 cut(s)	339, 636, 998
BciVI	GTATCC	1 cut(s)	895
BclI	TGATCA	1 cut(s)	690
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	372, 534
BfrI	CTTAAG	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	895
BisI	GCNGC	5 cut(s)	331, 372, 452, 1103, 1123
BlsI	GCNGC	5 cut(s)	332, 373, 453, 1104, 1124
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	339, 636, 998
Bme18I	GGWCC	3 cut(s)	85, 310, 335
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	3 cut(s)	85, 310, 335
BmiI	GGNNCC	3 cut(s)	312, 633, 1014
BmrFI	CCNGG	3 cut(s)	339, 636, 998
BmrI	ACTGGG	2 cut(s)	5, 257
BmsI	GCATC	4 cut(s)	184, 336, 474, 481
BmuI	ACTGGG	2 cut(s)	5, 257
BpiI	GAAGAC	2 cut(s)	29, 52
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	689
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	63, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 307, 320, 473, 669, 884
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	6 cut(s)	11, 227, 252, 276, 573, 1022
Bse3DI	GCAATG	3 cut(s)	44, 1092, 1097
Bse8I	GATNNNNATC	1 cut(s)	689
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	3 cut(s)	339, 636, 998
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	5 cut(s)	136, 199, 219, 489, 886
BseJI	GATNNNNATC	1 cut(s)	689
BseLI	CCNNNNNNNGG	6 cut(s)	115, 307, 320, 473, 669, 884
BseMI	GCAATG	3 cut(s)	44, 1092, 1097
BseMII	CTCAG	2 cut(s)	152, 983
BseNI	ACTGG	6 cut(s)	11, 227, 252, 276, 573, 1022
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	3 cut(s)	358, 1109, 1114
BsgI	GTGCAG	1 cut(s)	1108
Bsh1285I	CGRYCG	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	64, 301, 878
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	6 cut(s)	115, 307, 320, 473, 669, 884
BsmFI	GGGAC	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	559, 690
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	5 cut(s)	127, 330, 333, 451, 471
BspCNI	CTCAG	2 cut(s)	153, 982
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	312, 633, 1014
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	567
BspTI	CTTAAG	1 cut(s)	595
BsrDI	GCAATG	3 cut(s)	44, 1092, 1097
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	6 cut(s)	11, 227, 252, 276, 573, 1022
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	559, 690
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	3 cut(s)	339, 636, 998
Bst4CI	ACNGT	4 cut(s)	46, 203, 438, 950
Bst6I	CTCTTC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	595
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	174, 517, 675
BstDEI	CTNAG	3 cut(s)	161, 296, 969
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	5 cut(s)	136, 199, 219, 489, 886
BstKTI	GATC	2 cut(s)	562, 693
BstMBI	GATC	2 cut(s)	559, 690
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	3 cut(s)	339, 636, 998
BstSCI	CCNGG	3 cut(s)	337, 634, 996
BstSFI	CTRYAG	2 cut(s)	372, 534
BstV1I	GCAGC	3 cut(s)	358, 1109, 1114
BstV2I	GAAGAC	2 cut(s)	29, 52
BsuI	GTATCC	1 cut(s)	895
BtgI	CCRYGG	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	5 cut(s)	136, 199, 219, 489, 886
BtsI	GCAGTG	2 cut(s)	522, 889
BtsIMutI	CAGTG	4 cut(s)	383, 522, 889, 1029
Cac8I	GCNNGC	3 cut(s)	174, 517, 675
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	3 cut(s)	85, 310, 335
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	4 cut(s)	145, 439, 658, 960
CviAII	CATG	4 cut(s)	210, 488, 650, 1088
CviJI	RGCY	9 cut(s)	242, 300, 410, 477, 515, 647, 673, 996, 1078
CviKI_1	RGCY	9 cut(s)	242, 300, 410, 477, 515, 647, 673, 996, 1078
CviQI	GTAC	4 cut(s)	145, 439, 658, 960
DdeI	CTNAG	3 cut(s)	161, 296, 969
DpnI	GATC	2 cut(s)	561, 692
DpnII	GATC	2 cut(s)	559, 690
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	85, 310, 335
Eco57I	CTGAAG	5 cut(s)	463, 663, 834, 957, 975
EcoO109I	RGGNCCY	2 cut(s)	85, 310
EcoRII	CCWGG	3 cut(s)	337, 634, 996
EcoT14I	CCWWGG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	4 cut(s)	213, 491, 653, 1091
FalI	AAGNNNNNCTT	4 cut(s)	832, 864, 1001, 1033
FaqI	GGGAC	1 cut(s)	900
FatI	CATG	4 cut(s)	209, 487, 649, 1087
FauI	CCCGC	2 cut(s)	120, 464
FbaI	TGATCA	1 cut(s)	690
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	331, 372, 452, 1103, 1123
FokI	GGATG	5 cut(s)	143, 206, 226, 496, 893
Fsp4HI	GCNGC	5 cut(s)	331, 372, 452, 1103, 1123
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	5 cut(s)	331, 372, 452, 1103, 1123
GsuI	CTGGAG	1 cut(s)	516
HapII	CCGG	3 cut(s)	64, 301, 878
Hin1II	CATG	4 cut(s)	213, 491, 653, 1091
HincII	GTYRAC	2 cut(s)	206, 262
HindII	GTYRAC	2 cut(s)	206, 262
HinfI	GANTC	3 cut(s)	25, 52, 685
HpaII	CCGG	3 cut(s)	64, 301, 878
Hpy166II	GTNNAC	6 cut(s)	206, 262, 434, 441, 660, 943
Hpy188I	TCNGA	6 cut(s)	162, 606, 643, 690, 937, 955
Hpy188III	TCNNGA	5 cut(s)	49, 64, 308, 481, 563
Hpy8I	GTNNAC	6 cut(s)	206, 262, 434, 441, 660, 943
HpyAV	CCTTC	6 cut(s)	608, 748, 858, 950, 995, 1003
HpyCH4III	ACNGT	4 cut(s)	46, 203, 438, 950
HpyCH4IV	ACGT	2 cut(s)	430, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	3 cut(s)	161, 296, 969
HpySE526I	ACGT	2 cut(s)	430, 443
Hsp92II	CATG	4 cut(s)	213, 491, 653, 1091
Kpn2I	TCCGGA	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	559, 690
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	3 cut(s)	358, 1109, 1114
LweI	GCATC	4 cut(s)	184, 336, 474, 481
MabI	ACCWGGT	1 cut(s)	634
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	2 cut(s)	430, 443
MaeIII	GTNAC	2 cut(s)	218, 587
MalI	GATC	2 cut(s)	561, 692
MboI	GATC	2 cut(s)	559, 690
MboII	GAAGA	3 cut(s)	34, 52, 70
MfeI	CAATTG	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	8 cut(s)	379, 420, 501, 703, 726, 867, 895, 1027
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	562
Mph1103I	ATGCAT	1 cut(s)	489
MroI	TCCGGA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	847
MseI	TTAA	2 cut(s)	423, 596
MslI	CAYNNNNRTG	1 cut(s)	214
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	3 cut(s)	64, 301, 878
MspR9I	CCNGG	3 cut(s)	339, 636, 998
MunI	CAATTG	1 cut(s)	703
MvaI	CCWGG	3 cut(s)	339, 636, 998
MwoI	GCNNNNNNNGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	559, 690
NlaIII	CATG	4 cut(s)	213, 491, 653, 1091
NlaIV	GGNNCC	3 cut(s)	312, 633, 1014
NsiI	ATGCAT	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	52, 685
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	5 cut(s)	332, 373, 453, 1104, 1124
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	2 cut(s)	85, 310
PshBI	ATTAAT	1 cut(s)	423
Psp5II	RGGWCCY	2 cut(s)	85, 310
Psp6I	CCWGG	3 cut(s)	337, 634, 996
PspGI	CCWGG	3 cut(s)	337, 634, 996
PspN4I	GGNNCC	3 cut(s)	312, 633, 1014
PspPI	GGNCC	3 cut(s)	85, 310, 335
PspPPI	RGGWCCY	2 cut(s)	85, 310
PstI	CTGCAG	1 cut(s)	376
RsaI	GTAC	4 cut(s)	146, 440, 659, 961
RsaNI	GTAC	4 cut(s)	145, 439, 658, 960
RseI	CAYNNNNRTG	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	423, 596
SatI	GCNGC	5 cut(s)	331, 372, 452, 1103, 1123
Sau3AI	GATC	2 cut(s)	559, 690
Sau96I	GGNCC	3 cut(s)	85, 310, 335
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	339, 636, 998
SduI	GDGCHC	1 cut(s)	138
SexAI	ACCWGGT	1 cut(s)	634
SfaNI	GCATC	4 cut(s)	184, 336, 474, 481
SfcI	CTRYAG	2 cut(s)	372, 534
SinI	GGWCC	3 cut(s)	85, 310, 335
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	8 cut(s)	379, 420, 501, 703, 726, 867, 895, 1027
SsiI	CCGC	5 cut(s)	127, 330, 333, 451, 471
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	3 cut(s)	337, 634, 996
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	4 cut(s)	46, 203, 438, 950
TaiI	ACGT	2 cut(s)	433, 446
TaqI	TCGA	4 cut(s)	48, 81, 205, 745
TasI	AATT	8 cut(s)	379, 420, 501, 703, 726, 867, 895, 1027
TatI	WGTACW	2 cut(s)	144, 438
TauI	GCSGC	2 cut(s)	333, 454
TfiI	GAWTC	2 cut(s)	52, 685
Tru1I	TTAA	2 cut(s)	423, 596
Tru9I	TTAA	2 cut(s)	423, 596
TscAI	CASTG	4 cut(s)	390, 529, 896, 1029
TseI	GCWGC	3 cut(s)	371, 1102, 1122
TspDTI	ATGAA	6 cut(s)	282, 405, 473, 627, 954, 1088
TspRI	CASTG	4 cut(s)	390, 529, 896, 1029
Van91I	CCANNNNNTGG	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	595
VpaK11BI	GGWCC	3 cut(s)	85, 310, 335
VspI	ATTAAT	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	1 cut(s)	720
ZrmI	AGTACT	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.