Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009107

Physical Location & Seq

Genomic Coordinates Reverse (-)

1632245 .. 1634357

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGCATCCAAGCGGCGGCTTCAGGATGCATGATGGTGGAGAAATTGATGTCCGGGCTTGCTACACTGCGGTTTCTGTAGCAAGCATTTTGAACTTTTTGGATGATGAACTGGTTCATAATGTTGGAAGTTTCATCTTAAGTTGTCAGACGTATGAAGGTGGTATTTCTGGGGAGCCTGGTGCTGAAGCCCATGGTGGGTACACTTTTTGTGGGGTAGCTACAATGGTTCTAATCAATCAGGTCAATCGTTTGGACTTGCCTGGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAGTGTGGATTTCAGGGGAGGACTAATAAATTGGTCGACGGTTGCTACTCCTTCTGGCAGGGAGGTGTTTTTCCATTATTACAAAGAGTATGTTCAACTATTGATGAACAACTCGCGCTTCGGGATGCTGGAGGTCACTGTACCAAGGATGGCCCACAGACTTCTACAACATCTAATTTATCTGAAGAGGGGAAAATTTTTGAAGGCACCAAGTCTCCAGGAGTGAATTTGAATGACATCGGCTATGATTTTCTCAAGAGGCCTGTAAAATTGGAGCCACTTTTTCACAGCATCGCATTGCAACAATATATACTTCTATGCTCACAGGAGGAGAAGGGTGGAATGAAAGACAAACCCGGGAAATCTCGAGACTTTTATCACACATGCTATTGTCTAAGTGGTCTCTCTGTATGTCAACACATTTTGTCGAACGATGAAGACTCTCGGGTGTCGCCTTGGGTAGTCATGGGTCCCTATTCCAACTTGTTGGAACCAATTCATCCGCTCTTCAATGTTGTCCTAGAAAAATACCATGAAGCAAGGGAATTCTTTTTCGAAGAGACTGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

291

Amino Acids

32.2

Weight (kDa)

5.18

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40280 AT5G40280
fragaria_vesca	FvH4_6g50640
malus_domestica	MD09G1034200.v1.1 MD17G1034700.v1.1
prunus_persica	Prupe.3G284100_v2.0.a1 Prupe.6G347800_v2.0.a1 Prupe.6G347800_v2.0.a1
pyrus_communis	pycom111g02720 pycom17g03200
rosa_chinensis	RchiOBHm_Chr2g0171441
rosa_laevigata	RLG00000022014
rosa_multiflora	Rmu_sc0030144.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080650
rosa_rugosa	Rorug02G0554300.1 Rorug02G0554400
rosa_samantha	Rh2AG628600 Rh2BG639000 Rh2CG607700 Rh2DG650100 Rh2DG656100
rosa_wichuraiana	Rw2G052070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	1 cut(s)	416
AciI	CCGC	4 cut(s)	15, 18, 71, 803
AcsI	RAATTY	3 cut(s)	495, 526, 845
AcuI	CTGAAG	3 cut(s)	7, 207, 504
AfaI	GTAC	2 cut(s)	203, 442
AfiI	CCNNNNNNNGG	2 cut(s)	17, 198
AflII	CTTAAG	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	94, 396, 503, 532, 811
AjnI	CCWGG	3 cut(s)	178, 262, 517
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	4 cut(s)	519, 663, 707, 854
Ama87I	CYCGRG	3 cut(s)	656, 666, 744
AoxI	GGCC	2 cut(s)	451, 560
ApoI	RAATTY	3 cut(s)	495, 526, 845
Asp700I	GAANNNNTTC	2 cut(s)	114, 795
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	2 cut(s)	452, 770
AsuC2I	CCSGG	3 cut(s)	56, 657, 658
AsuII	TTCGAA	1 cut(s)	855
AvaI	CYCGRG	3 cut(s)	656, 666, 744
AvaII	GGWCC	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	744
BccI	CCATC	2 cut(s)	29, 443
BciT130I	CCWGG	3 cut(s)	180, 264, 519
BcnI	CCSGG	3 cut(s)	56, 657, 658
BcoDI	GTCTC	4 cut(s)	519, 663, 707, 854
BfaI	CTAG	1 cut(s)	821
BfmI	CTRYAG	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	139
BisI	GCNGC	2 cut(s)	16, 19
BlsI	GCNGC	2 cut(s)	17, 20
Bme1390I	CCNGG	6 cut(s)	56, 180, 264, 519, 657, 658
Bme18I	GGWCC	1 cut(s)	770
BmeT110I	CYCGRG	3 cut(s)	656, 666, 744
BmgT120I	GGNCC	2 cut(s)	452, 770
BmiI	GGNNCC	6 cut(s)	177, 508, 576, 771, 772, 792
BmrFI	CCNGG	6 cut(s)	56, 180, 264, 519, 657, 658
BmsI	GCATC	4 cut(s)	16, 18, 415, 600
BpiI	GAAGAC	1 cut(s)	744
BpmI	CTGGAG	2 cut(s)	450, 501
Bpu14I	TTCGAA	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	3 cut(s)	56, 657, 658
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	4 cut(s)	193, 444, 656, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 198
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	596
BseBI	CCWGG	3 cut(s)	180, 264, 519
BseDI	CCNNGG	4 cut(s)	193, 444, 656, 755
BseGI	GGATG	6 cut(s)	7, 33, 109, 430, 454, 799
BseLI	CCNNNNNNNGG	2 cut(s)	17, 198
BseMI	GCAATG	1 cut(s)	596
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	453, 562
BshNI	GGYRCC	1 cut(s)	506
BsiHKCI	CYCGRG	3 cut(s)	656, 666, 744
BsiSI	CCGG	2 cut(s)	55, 657
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	17, 198
BsmAI	GTCTC	4 cut(s)	519, 663, 707, 854
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	2 cut(s)	453, 562
Bso31I	GGTCTC	1 cut(s)	707
BsoBI	CYCGRG	3 cut(s)	656, 666, 744
Bsp119I	TTCGAA	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	4 cut(s)	15, 18, 71, 803
BspANI	GGCC	2 cut(s)	453, 562
BspCNI	CTCAG	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	6 cut(s)	177, 508, 576, 771, 772, 792
BspQI	GCTCTTC	1 cut(s)	812
BspT104I	TTCGAA	1 cut(s)	855
BspT107I	GGYRCC	1 cut(s)	506
BspTI	CTTAAG	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	707
BsrBI	CCGCTC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	4 cut(s)	193, 444, 656, 755
BssT1I	CCWWGG	3 cut(s)	193, 444, 755
Bst2UI	CCWGG	3 cut(s)	180, 264, 519
Bst4CI	ACNGT	2 cut(s)	341, 440
Bst6I	CTCTTC	3 cut(s)	480, 812, 852
BstAFI	CTTAAG	1 cut(s)	139
BstBI	TTCGAA	1 cut(s)	855
BstC8I	GCNNGC	2 cut(s)	61, 85
BstDEI	CTNAG	2 cut(s)	695, 864
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	6 cut(s)	7, 33, 109, 430, 454, 799
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	418
BstMAI	GTCTC	4 cut(s)	519, 663, 707, 854
BstNI	CCWGG	3 cut(s)	180, 264, 519
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	6 cut(s)	54, 178, 262, 517, 655, 656
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	416
BstV2I	GAAGAC	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	787
BsuRI	GGCC	2 cut(s)	453, 562
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	6 cut(s)	7, 33, 109, 430, 454, 799
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 436
Cac8I	GCNNGC	2 cut(s)	61, 85
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	2 cut(s)	452, 770
Cfr9I	CCCGGG	1 cut(s)	656
Csp6I	GTAC	2 cut(s)	202, 441
CviAII	CATG	5 cut(s)	32, 194, 684, 766, 833
CviJI	RGCY	9 cut(s)	21, 59, 178, 191, 221, 453, 543, 562, 577
CviKI_1	RGCY	9 cut(s)	21, 59, 178, 191, 221, 453, 543, 562, 577
CviQI	GTAC	2 cut(s)	202, 441
DdeI	CTNAG	2 cut(s)	695, 864
Eam1104I	CTCTTC	3 cut(s)	480, 812, 852
EarI	CTCTTC	3 cut(s)	480, 812, 852
Eco130I	CCWWGG	3 cut(s)	193, 444, 755
Eco147I	AGGCCT	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	3 cut(s)	7, 207, 504
Eco88I	CYCGRG	3 cut(s)	656, 666, 744
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	3 cut(s)	178, 262, 517
EcoT14I	CCWWGG	3 cut(s)	193, 444, 755
EcoT22I	ATGCAT	1 cut(s)	33
ErhI	CCWWGG	3 cut(s)	193, 444, 755
FaeI	CATG	5 cut(s)	35, 197, 687, 769, 836
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	5 cut(s)	31, 193, 683, 765, 832
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	16, 19
FokI	GGATG	5 cut(s)	40, 116, 437, 461, 786
Fsp4HI	GCNGC	2 cut(s)	16, 19
FspBI	CTAG	1 cut(s)	821
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	2 cut(s)	16, 19
GsuI	CTGGAG	2 cut(s)	450, 501
HaeIII	GGCC	2 cut(s)	453, 562
HapII	CCGG	2 cut(s)	55, 657
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	5 cut(s)	35, 197, 687, 769, 836
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	2 cut(s)	337, 716
HindII	GTYRAC	2 cut(s)	337, 716
HinfI	GANTC	1 cut(s)	740
HpaII	CCGG	2 cut(s)	55, 657
Hpy166II	GTNNAC	3 cut(s)	204, 337, 716
Hpy188I	TCNGA	2 cut(s)	150, 484
Hpy188III	TCNNGA	5 cut(s)	25, 422, 556, 666, 668
Hpy8I	GTNNAC	3 cut(s)	204, 337, 716
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	5 cut(s)	152, 292, 361, 497, 628
HpyCH4III	ACNGT	2 cut(s)	341, 440
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	31, 601
HpyF3I	CTNAG	2 cut(s)	695, 864
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	5 cut(s)	35, 197, 687, 769, 836
HspAI	GCGC	1 cut(s)	416
KflI	GGGWCCC	1 cut(s)	770
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	2 cut(s)	175, 574
LweI	GCATC	4 cut(s)	16, 18, 415, 600
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	434
MbiI	CCGCTC	1 cut(s)	805
MboII	GAAGA	4 cut(s)	497, 749, 799, 869
MluCI	AATT	9 cut(s)	45, 270, 329, 475, 495, 526, 569, 795, 845
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	3 cut(s)	106, 768, 804
MnlI	CCTC	6 cut(s)	312, 356, 425, 481, 552, 622
Mph1103I	ATGCAT	1 cut(s)	33
MroXI	GAANNNNTTC	2 cut(s)	114, 795
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	36
MspCI	CTTAAG	1 cut(s)	139
MspI	CCGG	2 cut(s)	55, 657
MspR9I	CCNGG	6 cut(s)	56, 180, 264, 519, 657, 658
MvaI	CCWGG	3 cut(s)	180, 264, 519
MvnI	CGCG	1 cut(s)	416
NciI	CCSGG	3 cut(s)	56, 657, 658
NcoI	CCATGG	1 cut(s)	193
NlaIII	CATG	5 cut(s)	35, 197, 687, 769, 836
NlaIV	GGNNCC	6 cut(s)	177, 508, 576, 771, 772, 792
NmuCI	GTSAC	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	33
NspI	RCATGY	1 cut(s)	687
NspV	TTCGAA	1 cut(s)	855
PaeR7I	CTCGAG	1 cut(s)	666
PceI	AGGCCT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	812
PdmI	GAANNNNTTC	2 cut(s)	114, 795
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	17, 20
PleI	GAGTC	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	734
PpuMI	RGGWCCY	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	178, 262, 517
PspGI	CCWGG	3 cut(s)	178, 262, 517
PspN4I	GGNNCC	6 cut(s)	177, 508, 576, 771, 772, 792
PspPI	GGNCC	2 cut(s)	452, 770
PspPPI	RGGWCCY	1 cut(s)	770
RsaI	GTAC	2 cut(s)	203, 442
RsaNI	GTAC	2 cut(s)	202, 441
RseI	CAYNNNNRTG	1 cut(s)	36
SalI	GTCGAC	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	16, 19
Sau96I	GGNCC	2 cut(s)	452, 770
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	6 cut(s)	56, 180, 264, 519, 657, 658
SetI	ASST	6 cut(s)	155, 163, 223, 246, 367, 436
SfaNI	GCATC	4 cut(s)	16, 18, 415, 600
SfcI	CTRYAG	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	855
SinI	GGWCC	1 cut(s)	770
SlaI	CTCGAG	1 cut(s)	666
SmaI	CCCGGG	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	3 cut(s)	139, 554, 666
SmoI	CTYRAG	3 cut(s)	139, 554, 666
Sse9I	AATT	9 cut(s)	45, 270, 329, 475, 495, 526, 569, 795, 845
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	4 cut(s)	15, 18, 71, 803
SspMI	CTAG	1 cut(s)	821
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	6 cut(s)	54, 178, 262, 517, 655, 656
StyI	CCWWGG	3 cut(s)	193, 444, 755
TaaI	ACNGT	2 cut(s)	341, 440
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	5 cut(s)	289, 336, 667, 728, 855
TasI	AATT	9 cut(s)	45, 270, 329, 475, 495, 526, 569, 795, 845
TauI	GCSGC	2 cut(s)	18, 21
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	73, 443
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspMI	CCCGGG	1 cut(s)	656
TspRI	CASTG	2 cut(s)	73, 443
Vha464I	CTTAAG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	3 cut(s)	495, 526, 845
XceI	RCATGY	1 cut(s)	687
XhoI	CTCGAG	1 cut(s)	666
XmaI	CCCGGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	336
XmnI	GAANNNNTTC	2 cut(s)	114, 795
XspI	CTAG	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.