Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009107

Physical Location & Seq

Genomic Coordinates Forward (+)

68152173 .. 68153327

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0554400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATCTCCAACAAGCCATCAGCAACCAAACCGACGTTGGACTTGAGATAACGAAGCATCTACTTCGAACCGATTTCAAGGAGAAGAACATGCCGCGGCGGAGGCAAACGGCCCCAAACTGCATCAGTTTGTTTCTGTCCTCAAATCCAATTCCAGCAACCACGTACCTCAACTTCCTGGCCTACAATCTCCTCACTTCCGTTCTGGCCGATGCATCCGCCGCTGGTGGGCCATGTCTGAACTTGGCCAATGGTCTCTGGGTGGACCGATCTCACCAGCTCGATGAATCGTACGTACAGGTGGTGTGCAATTATTACAAAGCAGCCCTAAAGCAAGCAGATTTTAAATCCAACCCCGATGGTGTAAGAATCGAGGTGAATTCCTGGGTCAATCAGGAAACCAACGGCCTTATCCCTGAGATTCTTCCTCCAAACTCAGTCACCCCCAACACGTATGTCATCCTTGCAAACACCTTGTACTTCAAAGCTTCTTGGTGTCGTGACTACTTCAATGCATCTCGGACAAGAAACGGTGCGTTTCACCTTTTGAATGGAAACTCAGTTTATGGAGTACCTTACATGACTAGCTGTTTTGGTGGTTGCCACTCCATAAGCGCCTTTGACGGCTTTAAAGTCTTGAATCTTGCTTACAAAGGAAGTAGTGATTACAAGGACCATCGATGTTTCTCTATGCACTTGCTTCTTCCTGATGCAAGAGATGGGCTGCCGGCTCTGGTCGAGAGGCTGCTACTGTTGCCATATGGGTTGGCCGGGGCTTCTGCTCCGCCGCCTCAAGAGATACAAGACTTTGTGGCCGATCACCCATTCATGCTTCTCATCAGACAAGGTGGTGGAACTGTGTTGTTCATGGGGCAAGTGCTCAATCCGCTTGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

299

Amino Acids

32.97

Weight (kDa)

6.64

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	74 - 249	7.9e-34	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40280 AT5G40280
fragaria_vesca	FvH4_6g50640
malus_domestica	MD09G1034200.v1.1 MD17G1034700.v1.1
prunus_persica	Prupe.3G284100_v2.0.a1 Prupe.6G347800_v2.0.a1 Prupe.6G347800_v2.0.a1
pyrus_communis	pycom111g02720 pycom17g03200
rosa_chinensis	RchiOBHm_Chr2g0171441
rosa_laevigata	RLG00000022014
rosa_multiflora	Rmu_sc0030144.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080650
rosa_rugosa	Rorug02G0554300.1 Rorug02G0554400
rosa_samantha	Rh2AG628600 Rh2BG639000 Rh2CG607700 Rh2DG650100 Rh2DG656100
rosa_wichuraiana	Rw2G052070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	97
AciI	CCGC	8 cut(s)	95, 97, 100, 219, 222, 785, 788, 887
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	4 cut(s)	207, 246, 768, 813
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	5 cut(s)	167, 293, 297, 479, 573
AfiI	CCNNNNNNNGG	2 cut(s)	228, 893
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	5 cut(s)	79, 484, 511, 550, 640
AjnI	CCWGG	2 cut(s)	177, 383
AluBI	AGCT	3 cut(s)	280, 488, 588
AluI	AGCT	3 cut(s)	280, 488, 588
Alw21I	GWGCWC	1 cut(s)	882
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	8 cut(s)	111, 180, 207, 230, 246, 406, 768, 813
ApeKI	GCWGC	3 cut(s)	323, 724, 745
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	4 cut(s)	112, 230, 265, 673
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	5 cut(s)	266, 388, 433, 533, 812
AsuII	TTCGAA	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	265, 673
BalI	TGGCCA	1 cut(s)	248
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
Bbv12I	GWGCWC	1 cut(s)	882
BbvI	GCAGC	3 cut(s)	335, 711, 732
BccI	CCATC	4 cut(s)	26, 353, 684, 713
BceAI	ACGGC	3 cut(s)	126, 421, 640
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	179, 385
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	618
BisI	GCNGC	7 cut(s)	95, 98, 222, 324, 725, 746, 788
BlsI	GCNGC	7 cut(s)	96, 99, 223, 325, 726, 747, 789
Bme1390I	CCNGG	3 cut(s)	179, 385, 772
Bme18I	GGWCC	2 cut(s)	265, 673
BmgT120I	GGNCC	4 cut(s)	112, 230, 265, 673
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	3 cut(s)	179, 385, 772
BmsI	GCATC	6 cut(s)	67, 132, 202, 224, 524, 700
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	2 cut(s)	65, 777
BpuMI	CCSGG	1 cut(s)	772
Bsa29I	ATCGAT	1 cut(s)	679
BsaAI	YACGTR	3 cut(s)	165, 295, 453
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	3 cut(s)	95, 384, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 893
Bse118I	RCCGGY	1 cut(s)	727
BseBI	CCWGG	2 cut(s)	179, 385
BseCI	ATCGAT	1 cut(s)	679
BseDI	CCNNGG	3 cut(s)	95, 384, 771
BseGI	GGATG	2 cut(s)	215, 459
BseLI	CCNNNNNNNGG	2 cut(s)	228, 893
BseMII	CTCAG	3 cut(s)	408, 450, 573
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	335, 711, 732
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	8 cut(s)	113, 182, 209, 232, 248, 408, 770, 815
BshVI	ATCGAT	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	882
BsiSI	CCGG	2 cut(s)	728, 771
BsiWI	CGTACG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	228, 893
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	8 cut(s)	113, 182, 209, 232, 248, 408, 770, 815
Bso31I	GGTCTC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp143I	GATC	3 cut(s)	4, 269, 817
BspACI	CCGC	8 cut(s)	95, 97, 100, 219, 222, 785, 788, 887
BspANI	GGCC	8 cut(s)	113, 182, 209, 232, 248, 408, 770, 815
BspCNI	CTCAG	3 cut(s)	409, 449, 572
BspDI	ATCGAT	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	727
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	3 cut(s)	95, 384, 771
BssMI	GATC	3 cut(s)	4, 269, 817
Bst2UI	CCWGG	2 cut(s)	179, 385
Bst4CI	ACNGT	3 cut(s)	533, 753, 859
BstBAI	YACGTR	3 cut(s)	165, 295, 453
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	4 cut(s)	336, 729, 891, 895
BstDEI	CTNAG	3 cut(s)	417, 436, 559
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	215, 459
BstFNI	CGCG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	3 cut(s)	7, 272, 820
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	3 cut(s)	4, 269, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 221, 754, 886
BstNI	CCWGG	2 cut(s)	179, 385
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	3 cut(s)	177, 383, 770
BstSNI	TACGTA	1 cut(s)	295
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	335, 711, 732
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	679
BsuRI	GGCC	8 cut(s)	113, 182, 209, 232, 248, 408, 770, 815
BsuTUI	ATCGAT	1 cut(s)	679
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	215, 459
Cac8I	GCNNGC	4 cut(s)	336, 729, 891, 895
CfoI	GCGC	1 cut(s)	617
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	4 cut(s)	112, 230, 265, 673
Cfr42I	CCGCGG	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	679
Csp6I	GTAC	5 cut(s)	166, 292, 296, 478, 572
CviAII	CATG	5 cut(s)	91, 234, 580, 829, 868
CviQI	GTAC	5 cut(s)	166, 292, 296, 478, 572
DdeI	CTNAG	3 cut(s)	417, 436, 559
DpnI	GATC	3 cut(s)	6, 271, 819
DpnII	GATC	3 cut(s)	4, 269, 817
DraI	TTTAAA	2 cut(s)	346, 631
EaeI	YGGCCR	4 cut(s)	207, 246, 768, 813
EciI	GGCGGA	3 cut(s)	115, 208, 774
Eco105I	TACGTA	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	265, 673
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	177, 383
EcoT22I	ATGCAT	2 cut(s)	217, 517
FaeI	CATG	5 cut(s)	94, 237, 583, 832, 871
FatI	CATG	5 cut(s)	90, 233, 579, 828, 867
FauNDI	CATATG	1 cut(s)	760
Fnu4HI	GCNGC	7 cut(s)	95, 98, 222, 324, 725, 746, 788
FokI	GGATG	2 cut(s)	202, 446
Fsp4HI	GCNGC	7 cut(s)	95, 98, 222, 324, 725, 746, 788
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	7 cut(s)	95, 98, 222, 324, 725, 746, 788
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	8 cut(s)	113, 182, 209, 232, 248, 408, 770, 815
HapII	CCGG	2 cut(s)	728, 771
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	5 cut(s)	94, 237, 583, 832, 871
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	4 cut(s)	287, 369, 421, 640
HpaII	CCGG	2 cut(s)	728, 771
HphI	GGTGA	5 cut(s)	266, 388, 433, 533, 812
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	240, 522, 842
Hpy188III	TCNNGA	6 cut(s)	395, 500, 637, 707, 739, 794
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	533, 753, 859
HpyCH4IV	ACGT	4 cut(s)	36, 164, 294, 452
HpyCH4V	TGCA	7 cut(s)	123, 215, 309, 467, 515, 694, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 221, 754, 886
HpyF3I	CTNAG	3 cut(s)	417, 436, 559
HpySE526I	ACGT	4 cut(s)	36, 164, 294, 452
Hsp92II	CATG	5 cut(s)	94, 237, 583, 832, 871
HspAI	GCGC	1 cut(s)	615
KroI	GCCGGC	1 cut(s)	727
KroNI	GCCGGC	1 cut(s)	729
KspI	CCGCGG	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	4, 269, 817
LmnI	GCTCC	1 cut(s)	787
Lsp1109I	GCAGC	3 cut(s)	335, 711, 732
LweI	GCATC	6 cut(s)	67, 132, 202, 224, 524, 700
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	4 cut(s)	36, 164, 294, 452
MaeIII	GTNAC	2 cut(s)	439, 500
MalI	GATC	3 cut(s)	6, 271, 819
MboI	GATC	3 cut(s)	4, 269, 817
MboII	GAAGA	3 cut(s)	97, 416, 695
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	882
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	150, 310, 379
MluNI	TGGCCA	1 cut(s)	248
MmeI	TCCRAC	3 cut(s)	19, 34, 375
MnlI	CCTC	8 cut(s)	96, 151, 179, 203, 367, 438, 735, 801
Mox20I	TGGCCA	1 cut(s)	248
Mph1103I	ATGCAT	2 cut(s)	217, 517
MroNI	GCCGGC	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	2 cut(s)	345, 630
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	2 cut(s)	97, 224
MspI	CCGG	2 cut(s)	728, 771
MspR9I	CCNGG	3 cut(s)	179, 385, 772
MvaI	CCWGG	2 cut(s)	179, 385
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	103, 221, 754, 886
NaeI	GCCGGC	1 cut(s)	729
NciI	CCSGG	1 cut(s)	772
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	3 cut(s)	4, 269, 817
NgoMIV	GCCGGC	1 cut(s)	727
NlaIII	CATG	5 cut(s)	94, 237, 583, 832, 871
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	439, 500
NsiI	ATGCAT	2 cut(s)	217, 517
NspI	RCATGY	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	729
PfeI	GAWTC	4 cut(s)	287, 369, 421, 640
Pfl23II	CGTACG	1 cut(s)	291
PkrI	GCNGC	7 cut(s)	96, 99, 223, 325, 726, 747, 789
Ppu21I	YACGTR	3 cut(s)	165, 295, 453
Psp6I	CCWGG	2 cut(s)	177, 383
PspGI	CCWGG	2 cut(s)	177, 383
PspLI	CGTACG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	4 cut(s)	112, 230, 265, 673
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	5 cut(s)	167, 293, 297, 479, 573
RsaNI	GTAC	5 cut(s)	166, 292, 296, 478, 572
SacII	CCGCGG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	345, 630
SatI	GCNGC	7 cut(s)	95, 98, 222, 324, 725, 746, 788
Sau3AI	GATC	3 cut(s)	4, 269, 817
Sau96I	GGNCC	4 cut(s)	112, 230, 265, 673
ScrFI	CCNGG	3 cut(s)	179, 385, 772
SduI	GDGCHC	1 cut(s)	882
SfaNI	GCATC	6 cut(s)	67, 132, 202, 224, 524, 700
Sfr303I	CCGCGG	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	265, 673
SmlI	CTYRAG	2 cut(s)	44, 792
SmoI	CTYRAG	2 cut(s)	44, 792
SnaBI	TACGTA	1 cut(s)	295
Sse9I	AATT	3 cut(s)	150, 310, 379
SsiI	CCGC	8 cut(s)	95, 97, 100, 219, 222, 785, 788, 887
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	177, 383, 770
TaaI	ACNGT	3 cut(s)	533, 753, 859
TaiI	ACGT	4 cut(s)	39, 167, 297, 455
TaqI	TCGA	5 cut(s)	67, 282, 372, 679, 738
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	150, 310, 379
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	4 cut(s)	97, 100, 224, 790
TfiI	GAWTC	4 cut(s)	287, 369, 421, 640
Tru1I	TTAA	2 cut(s)	345, 630
Tru9I	TTAA	2 cut(s)	345, 630
TseFI	GTSAC	2 cut(s)	439, 500
TseI	GCWGC	3 cut(s)	323, 724, 745
Tsp45I	GTSAC	2 cut(s)	439, 500
TspDTI	ATGAA	3 cut(s)	300, 817, 856
TspGWI	ACGGA	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	265, 673
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	2 cut(s)	217, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.