Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009107

Physical Location & Seq

Genomic Coordinates Forward (+)

85895094 .. 85900245

Gene Structure 5152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG639000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGTTCCCAGTCGCAACGAAGACTCAGCACGAGCAATGGATGGTCGAGAGTCAGGTCTTCCGGAAATACAACCTCTTCAAGGACCTCCCCCACCACGCCCAAACCCTAATGCTGGAACTTCGGCGGGATGAGCACACAGTGTACTTGATGAGAGGTCTGAGAGGTCTGCCTGCTTCGTTTTCAGTTTTGGATGCCAATCGACCATGGATGTGTTACTGGATTTTGCACTCATTGGCTTTACTGGGTGAGTTGGTTGACGATGAACTGGAAAATAGAACCATTGACTTCCTTAGCCGGTGTCAGGACCCAAATGGCGGATATGGCGGCGGACCTGGACAGATGCCACATCTTGCAACAACTTATGCTGCAGTCAATTCACTGATTACTCTGGGTGGTCATAAAGCTCTTTCATCAATTAATAGACGTGAACTGTACACGTTTCTGCGGCGAATGAAACAACCAAGCGGGGGCTTCAGGATGCATGATGCTGGAGAAATTGATGTTCGGGCTTGCTACACTGCCATTTCTGTAGCAAGTGTTTTGAACATTTTGGATCACGAACTGGTTGATAATGTTGGAAGTTACATCTTAAGTTGTCAGACTTATGAAGGTGGTATATCTGGGGAACCTGGTTCTGAAGCTCATGGTGGGTACACCTTTTGTGGGCTGGCAACAATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAGGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACGCCGCACTTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGTCAACAGTTCTGAAGGTACTCCATCTCAGGTTGATGACACCGGAGGTTTTAGGCAGGAAGGTAGGCTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

337

Amino Acids

37.56

Weight (kDa)

5.67

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	41 - 288	2.1e-91	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40280 AT5G40280
fragaria_vesca	FvH4_6g50640
malus_domestica	MD09G1034200.v1.1 MD17G1034700.v1.1
prunus_persica	Prupe.3G284100_v2.0.a1 Prupe.6G347800_v2.0.a1 Prupe.6G347800_v2.0.a1
pyrus_communis	pycom111g02720 pycom17g03200
rosa_chinensis	RchiOBHm_Chr2g0171441
rosa_laevigata	RLG00000022014
rosa_multiflora	Rmu_sc0030144.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080650
rosa_rugosa	Rorug02G0554300.1 Rorug02G0554400
rosa_samantha	Rh2AG628600 Rh2BG639000 Rh2CG607700 Rh2DG650100 Rh2DG656100
rosa_wichuraiana	Rw2G052070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	7 cut(s)	127, 318, 327, 330, 448, 468, 889
AclWI	GGATC	1 cut(s)	564
AcuI	CTGAAG	5 cut(s)	460, 660, 831, 954, 972
AcyI	GRCGYC	1 cut(s)	886
AdeI	CACNNNGTG	1 cut(s)	142
AfaI	GTAC	4 cut(s)	146, 437, 656, 958
AfiI	CCNNNNNNNGG	8 cut(s)	82, 115, 304, 317, 470, 666, 881, 895
AflII	CTTAAG	1 cut(s)	592
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	82, 547
AjiI	CACGTC	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	334, 631
AluBI	AGCT	2 cut(s)	407, 644
AluI	AGCT	2 cut(s)	407, 644
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	564
Aor13HI	TCCGGA	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	368
AseI	ATTAAT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	844
AspS9I	GGNCC	3 cut(s)	85, 307, 332
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	85, 307, 332
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	29, 52
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	3 cut(s)	37, 785, 970
BciT130I	CCWGG	2 cut(s)	336, 633
BciVI	GTATCC	1 cut(s)	892
BclI	TGATCA	1 cut(s)	687
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	2 cut(s)	369, 531
BfrI	CTTAAG	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	892
BisI	GCNGC	4 cut(s)	328, 369, 449, 889
BlsI	GCNGC	4 cut(s)	329, 370, 450, 890
Bme1390I	CCNGG	2 cut(s)	336, 633
Bme18I	GGWCC	3 cut(s)	85, 307, 332
BmgBI	CACGTC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	85, 307, 332
BmiI	GGNNCC	2 cut(s)	309, 630
BmrFI	CCNGG	2 cut(s)	336, 633
BmrI	ACTGGG	2 cut(s)	5, 254
BmsI	GCATC	4 cut(s)	184, 333, 471, 478
BmuI	ACTGGG	2 cut(s)	5, 254
BpiI	GAAGAC	2 cut(s)	29, 52
BpmI	CTGGAG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	293
BsaBI	GATNNNNATC	2 cut(s)	198, 686
BsaHI	GRCGYC	1 cut(s)	886
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	3 cut(s)	63, 874, 980
Bsc4I	CCNNNNNNNGG	8 cut(s)	82, 115, 304, 317, 470, 666, 881, 895
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	5 cut(s)	11, 224, 249, 273, 570
Bse3DI	GCAATG	1 cut(s)	44
Bse8I	GATNNNNATC	2 cut(s)	198, 686
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	336, 633
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	6 cut(s)	48, 136, 199, 216, 486, 883
BseJI	GATNNNNATC	2 cut(s)	198, 686
BseLI	CCNNNNNNNGG	8 cut(s)	82, 115, 304, 317, 470, 666, 881, 895
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	4 cut(s)	41, 152, 980, 998
BseNI	ACTGG	5 cut(s)	11, 224, 249, 273, 570
BseRI	GAGGAG	1 cut(s)	872
BseXI	GCAGC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	4 cut(s)	64, 298, 875, 981
BslFI	GGGAC	1 cut(s)	897
BslI	CCNNNNNNNGG	8 cut(s)	82, 115, 304, 317, 470, 666, 881, 895
BsmFI	GGGAC	1 cut(s)	897
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	556, 687
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	7 cut(s)	127, 318, 327, 330, 448, 468, 889
BspCNI	CTCAG	4 cut(s)	40, 153, 979, 999
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	309, 630
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	5 cut(s)	11, 224, 249, 273, 570
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	556, 687
BssNI	GRCGYC	1 cut(s)	886
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	336, 633
Bst4CI	ACNGT	3 cut(s)	142, 435, 947
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	886
BstAFI	CTTAAG	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	868
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	174, 514, 672
BstDEI	CTNAG	5 cut(s)	27, 161, 293, 966, 1007
BstDSI	CCRYGG	1 cut(s)	206
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	6 cut(s)	48, 136, 199, 216, 486, 883
BstKTI	GATC	2 cut(s)	559, 690
BstMBI	GATC	2 cut(s)	556, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 324, 868
BstNI	CCWGG	2 cut(s)	336, 633
BstSCI	CCNGG	2 cut(s)	334, 631
BstSFI	CTRYAG	2 cut(s)	369, 531
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	2 cut(s)	29, 52
BsuI	GTATCC	1 cut(s)	892
BtgI	CCRYGG	1 cut(s)	206
BtrI	CACGTC	1 cut(s)	428
BtsCI	GGATG	6 cut(s)	48, 136, 199, 216, 486, 883
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	147, 380, 519
Cac8I	GCNNGC	3 cut(s)	174, 514, 672
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	3 cut(s)	85, 307, 332
CseI	GACGC	1 cut(s)	894
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	4 cut(s)	145, 436, 655, 957
CviAII	CATG	3 cut(s)	207, 485, 647
CviJI	RGCY	8 cut(s)	239, 297, 407, 474, 512, 644, 670, 1006
CviKI_1	RGCY	8 cut(s)	239, 297, 407, 474, 512, 644, 670, 1006
CviQI	GTAC	4 cut(s)	145, 436, 655, 957
DdeI	CTNAG	5 cut(s)	27, 161, 293, 966, 1007
DpnI	GATC	2 cut(s)	558, 689
DpnII	GATC	2 cut(s)	556, 687
DraIII	CACNNNGTG	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	2 cut(s)	333, 345
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	3 cut(s)	85, 307, 332
Eco57I	CTGAAG	5 cut(s)	460, 660, 831, 954, 972
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoO109I	RGGNCCY	2 cut(s)	85, 307
EcoRII	CCWGG	2 cut(s)	334, 631
EcoT14I	CCWWGG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	210, 488, 650
FaiI	YATR	9 cut(s)	208, 324, 366, 402, 486, 609, 620, 648, 929
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	1 cut(s)	897
FatI	CATG	3 cut(s)	206, 484, 646
FauI	CCCGC	2 cut(s)	120, 461
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	4 cut(s)	328, 369, 449, 889
FokI	GGATG	6 cut(s)	55, 143, 206, 223, 493, 890
Fsp4HI	GCNGC	4 cut(s)	328, 369, 449, 889
FspBI	CTAG	1 cut(s)	717
GluI	GCNGC	4 cut(s)	328, 369, 449, 889
GsuI	CTGGAG	1 cut(s)	513
HapII	CCGG	4 cut(s)	64, 298, 875, 981
HgaI	GACGC	1 cut(s)	894
Hin1I	GRCGYC	1 cut(s)	886
Hin1II	CATG	3 cut(s)	210, 488, 650
HincII	GTYRAC	2 cut(s)	259, 943
HindII	GTYRAC	2 cut(s)	259, 943
HinfI	GANTC	3 cut(s)	25, 52, 682
HpaII	CCGG	4 cut(s)	64, 298, 875, 981
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	6 cut(s)	145, 259, 431, 438, 657, 943
Hpy188I	TCNGA	6 cut(s)	162, 603, 640, 687, 934, 952
Hpy188III	TCNNGA	5 cut(s)	49, 64, 305, 478, 560
Hpy8I	GTNNAC	6 cut(s)	145, 259, 431, 438, 657, 943
HpyAV	CCTTC	5 cut(s)	605, 745, 855, 947, 992
HpyCH4III	ACNGT	3 cut(s)	142, 435, 947
HpyCH4IV	ACGT	2 cut(s)	427, 440
HpyCH4V	TGCA	6 cut(s)	229, 356, 371, 484, 821, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 324, 868
HpyF3I	CTNAG	5 cut(s)	27, 161, 293, 966, 1007
HpySE526I	ACGT	2 cut(s)	427, 440
Hsp92I	GRCGYC	1 cut(s)	886
Hsp92II	CATG	3 cut(s)	210, 488, 650
Kpn2I	TCCGGA	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	556, 687
LmnI	GCTCC	1 cut(s)	859
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	4 cut(s)	184, 333, 471, 478
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	2 cut(s)	427, 440
MaeIII	GTNAC	2 cut(s)	215, 584
MalI	GATC	2 cut(s)	558, 689
MboI	GATC	2 cut(s)	556, 687
MboII	GAAGA	3 cut(s)	34, 52, 70
MfeI	CAATTG	1 cut(s)	700
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	6 cut(s)	376, 417, 498, 700, 723, 864
MlyI	GAGTC	2 cut(s)	19, 61
MmeI	TCCRAC	1 cut(s)	559
Mph1103I	ATGCAT	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	844
MseI	TTAA	2 cut(s)	420, 593
MslI	CAYNNNNRTG	1 cut(s)	211
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	4 cut(s)	64, 298, 875, 981
MspR9I	CCNGG	2 cut(s)	336, 633
MunI	CAATTG	1 cut(s)	700
MvaI	CCWGG	2 cut(s)	336, 633
MwoI	GCNNNNNNNGC	3 cut(s)	133, 324, 868
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	556, 687
NlaIII	CATG	3 cut(s)	210, 488, 650
NlaIV	GGNNCC	2 cut(s)	309, 630
NsiI	ATGCAT	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	1 cut(s)	682
PkrI	GCNGC	4 cut(s)	329, 370, 450, 890
PleI	GAGTC	2 cut(s)	19, 60
PpsI	GAGTC	2 cut(s)	19, 60
PpuMI	RGGWCCY	2 cut(s)	85, 307
PshBI	ATTAAT	1 cut(s)	420
Psp5II	RGGWCCY	2 cut(s)	85, 307
Psp6I	CCWGG	2 cut(s)	334, 631
PspGI	CCWGG	2 cut(s)	334, 631
PspN4I	GGNNCC	2 cut(s)	309, 630
PspPI	GGNCC	3 cut(s)	85, 307, 332
PspPPI	RGGWCCY	2 cut(s)	85, 307
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	4 cut(s)	146, 437, 656, 958
RsaNI	GTAC	4 cut(s)	145, 436, 655, 957
RseI	CAYNNNNRTG	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	420, 593
SatI	GCNGC	4 cut(s)	328, 369, 449, 889
Sau3AI	GATC	2 cut(s)	556, 687
Sau96I	GGNCC	3 cut(s)	85, 307, 332
SchI	GAGTC	2 cut(s)	19, 61
ScrFI	CCNGG	2 cut(s)	336, 633
SduI	GDGCHC	1 cut(s)	138
SexAI	ACCWGGT	1 cut(s)	631
SfaNI	GCATC	4 cut(s)	184, 333, 471, 478
SfcI	CTRYAG	2 cut(s)	369, 531
SinI	GGWCC	3 cut(s)	85, 307, 332
SmiMI	CAYNNNNRTG	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	6 cut(s)	376, 417, 498, 700, 723, 864
SsiI	CCGC	7 cut(s)	127, 318, 327, 330, 448, 468, 889
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	2 cut(s)	334, 631
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	142, 435, 947
TaiI	ACGT	2 cut(s)	430, 443
TaqI	TCGA	3 cut(s)	48, 202, 742
TasI	AATT	6 cut(s)	376, 417, 498, 700, 723, 864
TatI	WGTACW	2 cut(s)	144, 435
TauI	GCSGC	3 cut(s)	330, 451, 891
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	2 cut(s)	420, 593
Tru9I	TTAA	2 cut(s)	420, 593
TscAI	CASTG	3 cut(s)	147, 387, 526
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	4 cut(s)	279, 402, 470, 624
TspRI	CASTG	3 cut(s)	147, 387, 526
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	85, 307, 332
VspI	ATTAAT	1 cut(s)	420
XagI	CCTNNNNNAGG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	1 cut(s)	717
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.