RLG00000022014

Protein farnesyltransferase subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
79975928 .. 79980951
5024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022014

Sequence Viewer

Length: 1344 bp
ATGGAGTTCCCAGTCGCAACGAAGACTCAGCACGAGCAATGGATGGTCGAGAATCAGGTCTTCCGGAAATACAACCTCTTTGAGGACCTCCCGCACCACGCCCAAACCCTAATGCTGGAACTTCGGCGGGATGAGCACATAGAGTACTTGATGAGAGGTCTGAGAGGTCTGCCTCCTTCGTTTTCAGTTTTGGATGCCAATCGACCATGGATGTGTTACTGGATTTTGCACTCATTGGCTTTACTGGGAGAGTTGGTTGACGATGAACTGGAAAATAGCACCATTGACTTCCTTAGCCGGTGTCAGGACCCAAATGGTGGATATGGCGGCGGGCCTGGACAGATGCCACATCTTGCAACAACTTATGCTGCAGTCAATTCACTGATTACTCTGGGTGGTCATAAAGCTCTTTCATCAATTAATAGATGTGAACTATACATGTTTCTGCAGCGAATGAAGCATCCAAGCGGGGGCTTCAGGATGCATGATGCTGGAGAAATTGATGTTCGGGCTTGCTACACTGCCATTTCTGTAGCAAGTGTTTTGAACATTTTGGATCGAGAACTGGTTGATAATGTTGGAAGTTACATCTTAAGTTGTCAGACTTATGAAGGTGGTATATCTGGGGAACCTGGTTCTGAAGCTCATGGTGGGTACACCTTTTGTGGGCTGGCAACAATGATTCTGATCAATGAGGTCAACTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAGGTGCATTTGCATTAGTACAAAGAATACCTTCAGTTAGTGAGGAGGAAATTGTGCTACCGGATGTGGGACACTGCACTTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGCTGGCAACAGTTCTGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGACATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGGTACATACTTTTATGCACACAGGCAGAGAATGGTGGACTGATAGACAAACCTGGCAAATCTAGAGATTTTTATCACACATGTTATTGCCTAAGTGGTCTCTCTGTATGTCAACATATCTGCTCAGATGCTGACTCTCCAGTTTTGCCTAGAGCAGTTACGGGTCCCTACTCCAATCTGTTGGAACCGATTCATCCCCTCTTCAATGTCGTCTTAGATCAGTATCATGAAGCGCGGGAATTCTTCACGACACACCAGGCACCATTCAACTCCAAGGTTCTCCATTAA

Protein Analysis

448

Amino Acids

49.98

Weight (kDa)

5.45

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 41 - 422 2.4e-111 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1315
AccB7I CCANNNNNTGG 1 cut(s) 317
AccI GTMKAC 1 cut(s) 1020
AccII CGCG 1 cut(s) 1291
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 8 cut(s) 92, 127, 327, 330, 468, 1031, 1057, 1291
AclWI GGATC 1 cut(s) 564
AcsI RAATTY 1 cut(s) 1295
AcuI CTGAAG 5 cut(s) 460, 660, 831, 954, 972
AfaI GTAC 4 cut(s) 146, 656, 834, 1061
AfiI CCNNNNNNNGG 7 cut(s) 82, 115, 304, 317, 470, 666, 881
AflII CTTAAG 1 cut(s) 592
AflIII ACRYGT 2 cut(s) 438, 1136
AgsI TTSAA 4 cut(s) 547, 961, 1261, 1324
AjnI CCWGG 4 cut(s) 334, 631, 1108, 1311
AluBI AGCT 3 cut(s) 407, 644, 938
AluI AGCT 3 cut(s) 407, 644, 938
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 1160
AlwI GGATC 1 cut(s) 564
AlwNI CAGNNNCTG 1 cut(s) 1187
Aor13HI TCCGGA 1 cut(s) 63
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 368, 448, 1054
ApoI RAATTY 1 cut(s) 1295
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 2 cut(s) 844, 1245
AspLEI GCGC 1 cut(s) 1291
AspS9I GGNCC 4 cut(s) 85, 307, 332, 1220
AvaII GGWCC 3 cut(s) 85, 307, 1220
BanI GGYRCC 1 cut(s) 1315
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 29, 52
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 355, 460, 1066
BccI CCATC 2 cut(s) 37, 785
BciT130I CCWGG 4 cut(s) 336, 633, 1110, 1313
BciVI GTATCC 1 cut(s) 892
BclI TGATCA 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 1160
BfaI CTAG 3 cut(s) 717, 1119, 1206
BfmI CTRYAG 3 cut(s) 369, 446, 531
BfrI CTTAAG 1 cut(s) 592
BfuI GTATCC 1 cut(s) 892
BisI GCNGC 5 cut(s) 328, 369, 449, 1031, 1055
BlsI GCNGC 5 cut(s) 329, 370, 450, 1032, 1056
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 4 cut(s) 336, 633, 1110, 1313
Bme18I GGWCC 3 cut(s) 85, 307, 1220
BmgT120I GGNCC 4 cut(s) 85, 307, 332, 1220
BmiI GGNNCC 7 cut(s) 309, 630, 966, 1221, 1222, 1242, 1317
BmrFI CCNGG 4 cut(s) 336, 633, 1110, 1313
BmrI ACTGGG 2 cut(s) 5, 254
BmsI GCATC 6 cut(s) 184, 333, 469, 471, 478, 1174
BmuI ACTGGG 2 cut(s) 5, 254
BpiI GAAGAC 2 cut(s) 29, 52
BpmI CTGGAG 2 cut(s) 513, 1179
Bpu10I CCTNAGC 1 cut(s) 293
BsaBI GATNNNNATC 4 cut(s) 198, 686, 1128, 1278
BsaI GGTCTC 1 cut(s) 1160
BsaJI CCNNGG 2 cut(s) 206, 1329
BsaWI WCCGGW 2 cut(s) 63, 874
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 7 cut(s) 82, 115, 304, 317, 470, 666, 881
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 7 cut(s) 11, 224, 249, 273, 570, 974, 1196
Bse3DI GCAATG 3 cut(s) 44, 1044, 1049
Bse8I GATNNNNATC 4 cut(s) 198, 686, 1128, 1278
BseAI TCCGGA 1 cut(s) 63
BseBI CCWGG 4 cut(s) 336, 633, 1110, 1313
BseDI CCNNGG 2 cut(s) 206, 1329
BseGI GGATG 8 cut(s) 48, 136, 199, 216, 460, 486, 883, 1249
BseJI GATNNNNATC 4 cut(s) 198, 686, 1128, 1278
BseLI CCNNNNNNNGG 7 cut(s) 82, 115, 304, 317, 470, 666, 881
BseMI GCAATG 3 cut(s) 44, 1044, 1049
BseMII CTCAG 3 cut(s) 41, 152, 1194
BseNI ACTGG 7 cut(s) 11, 224, 249, 273, 570, 974, 1196
BseRI GAGGAG 1 cut(s) 872
BseXI GCAGC 3 cut(s) 355, 460, 1066
BsgI GTGCAG 1 cut(s) 874
Bsh1236I CGCG 1 cut(s) 1291
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 1315
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 3 cut(s) 64, 298, 875
BslFI GGGAC 2 cut(s) 897, 1206
BslI CCNNNNNNNGG 7 cut(s) 82, 115, 304, 317, 470, 666, 881
BsmAI GTCTC 1 cut(s) 1160
BsmFI GGGAC 2 cut(s) 897, 1206
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 1160
Bsp1286I GDGCHC 1 cut(s) 138
Bsp13I TCCGGA 1 cut(s) 63
Bsp143I GATC 3 cut(s) 556, 687, 1273
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 8 cut(s) 92, 127, 327, 330, 468, 1031, 1057, 1291
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 40, 153, 1193
BspEI TCCGGA 1 cut(s) 63
BspFNI CGCG 1 cut(s) 1291
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 7 cut(s) 309, 630, 966, 1221, 1222, 1242, 1317
BspMAI CTGCAG 2 cut(s) 373, 450
BspPI GGATC 1 cut(s) 564
BspT107I GGYRCC 1 cut(s) 1315
BspTI CTTAAG 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 1160
BsrDI GCAATG 3 cut(s) 44, 1044, 1049
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 7 cut(s) 11, 224, 249, 273, 570, 974, 1196
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 206, 1329
BssMI GATC 3 cut(s) 556, 687, 1273
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 206, 1329
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 4 cut(s) 336, 633, 1110, 1313
Bst4CI ACNGT 2 cut(s) 704, 947
Bst6I CTCTTC 1 cut(s) 1262
BstAFI CTTAAG 1 cut(s) 592
BstC8I GCNNGC 4 cut(s) 332, 514, 672, 940
BstDEI CTNAG 6 cut(s) 27, 161, 293, 1148, 1180, 1270
BstDSI CCRYGG 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 8 cut(s) 48, 136, 199, 216, 460, 486, 883, 1249
BstFNI CGCG 1 cut(s) 1291
BstHHI GCGC 1 cut(s) 1291
BstKTI GATC 3 cut(s) 559, 690, 1276
BstMAI GTCTC 1 cut(s) 1160
BstMBI GATC 3 cut(s) 556, 687, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 133, 457
BstNI CCWGG 4 cut(s) 336, 633, 1110, 1313
BstNSI RCATGY 2 cut(s) 442, 1140
BstSCI CCNGG 4 cut(s) 334, 631, 1108, 1311
BstSFI CTRYAG 3 cut(s) 369, 446, 531
BstUI CGCG 1 cut(s) 1291
BstV1I GCAGC 3 cut(s) 355, 460, 1066
BstV2I GAAGAC 2 cut(s) 29, 52
BstXI CCANNNNNNTGG 1 cut(s) 1237
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 8 cut(s) 48, 136, 199, 216, 460, 486, 883, 1249
BtsI GCAGTG 2 cut(s) 519, 886
BtsIMutI CAGTG 4 cut(s) 380, 519, 886, 981
Cac8I GCNNGC 4 cut(s) 332, 514, 672, 940
CaiI CAGNNNCTG 1 cut(s) 1187
CciI TCATGA 1 cut(s) 1282
CfoI GCGC 1 cut(s) 1291
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 85, 307, 332, 1220
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 4 cut(s) 145, 655, 833, 1060
CviAII CATG 8 cut(s) 207, 439, 485, 647, 1024, 1040, 1137, 1283
CviQI GTAC 4 cut(s) 145, 655, 833, 1060
DdeI CTNAG 6 cut(s) 27, 161, 293, 1148, 1180, 1270
DpnI GATC 3 cut(s) 558, 689, 1275
DpnII GATC 3 cut(s) 556, 687, 1273
Eam1104I CTCTTC 1 cut(s) 1262
EarI CTCTTC 1 cut(s) 1262
Eco130I CCWWGG 2 cut(s) 206, 1329
Eco31I GGTCTC 1 cut(s) 1160
Eco47I GGWCC 3 cut(s) 85, 307, 1220
Eco57I CTGAAG 5 cut(s) 460, 660, 831, 954, 972
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoO109I RGGNCCY 3 cut(s) 85, 307, 1220
EcoRI GAATTC 1 cut(s) 1295
EcoRII CCWGG 4 cut(s) 334, 631, 1108, 1311
EcoT14I CCWWGG 2 cut(s) 206, 1329
EcoT22I ATGCAT 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 206, 1329
FaeI CATG 8 cut(s) 210, 442, 488, 650, 1027, 1043, 1140, 1286
FalI AAGNNNNNCTT 4 cut(s) 829, 861, 953, 985
FaqI GGGAC 2 cut(s) 897, 1206
FatI CATG 8 cut(s) 206, 438, 484, 646, 1023, 1039, 1136, 1282
FauI CCCGC 5 cut(s) 99, 120, 323, 461, 1284
FbaI TGATCA 1 cut(s) 687
FblI GTMKAC 1 cut(s) 1020
Fnu4HI GCNGC 5 cut(s) 328, 369, 449, 1031, 1055
FokI GGATG 8 cut(s) 55, 143, 206, 223, 447, 493, 890, 1236
Fsp4HI GCNGC 5 cut(s) 328, 369, 449, 1031, 1055
FspBI CTAG 3 cut(s) 717, 1119, 1206
GlaI GCGC 1 cut(s) 1290
GluI GCNGC 5 cut(s) 328, 369, 449, 1031, 1055
GsuI CTGGAG 2 cut(s) 513, 1179
HaeIII GGCC 1 cut(s) 334
HapII CCGG 3 cut(s) 64, 298, 875
HhaI GCGC 1 cut(s) 1291
Hin1II CATG 8 cut(s) 210, 442, 488, 650, 1027, 1043, 1140, 1286
Hin6I GCGC 1 cut(s) 1289
HinP1I GCGC 1 cut(s) 1289
HincII GTYRAC 3 cut(s) 259, 700, 1169
HindII GTYRAC 3 cut(s) 259, 700, 1169
HinfI GANTC 5 cut(s) 25, 52, 682, 1190, 1246
HpaII CCGG 3 cut(s) 64, 298, 875
Hpy166II GTNNAC 7 cut(s) 259, 431, 657, 700, 1021, 1094, 1169
Hpy188I TCNGA 7 cut(s) 162, 603, 640, 687, 934, 952, 1183
Hpy188III TCNNGA 8 cut(s) 49, 64, 305, 478, 560, 1119, 1283, 1303
Hpy8I GTNNAC 7 cut(s) 259, 431, 657, 700, 1021, 1094, 1169
HpyAV CCTTC 6 cut(s) 186, 605, 745, 855, 947, 955
HpyCH4III ACNGT 2 cut(s) 704, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 457
HpyF3I CTNAG 6 cut(s) 27, 161, 293, 1148, 1180, 1270
Hsp92II CATG 8 cut(s) 210, 442, 488, 650, 1027, 1043, 1140, 1286
HspAI GCGC 1 cut(s) 1289
KflI GGGWCCC 1 cut(s) 1220
Kpn2I TCCGGA 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 3 cut(s) 556, 687, 1273
Lsp1109I GCAGC 3 cut(s) 355, 460, 1066
LweI GCATC 6 cut(s) 184, 333, 469, 471, 478, 1174
MabI ACCWGGT 1 cut(s) 631
MaeI CTAG 3 cut(s) 717, 1119, 1206
MaeIII GTNAC 3 cut(s) 215, 584, 1213
MalI GATC 3 cut(s) 558, 689, 1275
MboI GATC 3 cut(s) 556, 687, 1273
MboII GAAGA 4 cut(s) 34, 52, 1249, 1291
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 7 cut(s) 376, 417, 498, 723, 864, 979, 1295
MlyI GAGTC 2 cut(s) 19, 1184
MmeI TCCRAC 2 cut(s) 559, 1218
Mph1103I ATGCAT 1 cut(s) 486
MroI TCCGGA 1 cut(s) 63
MroXI GAANNNNTTC 2 cut(s) 844, 1245
MseI TTAA 3 cut(s) 420, 593, 1342
MslI CAYNNNNRTG 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 1057
MspCI CTTAAG 1 cut(s) 592
MspI CCGG 3 cut(s) 64, 298, 875
MspR9I CCNGG 4 cut(s) 336, 633, 1110, 1313
MvaI CCWGG 4 cut(s) 336, 633, 1110, 1313
MvnI CGCG 1 cut(s) 1291
MwoI GCNNNNNNNGC 2 cut(s) 133, 457
NcoI CCATGG 1 cut(s) 206
NdeII GATC 3 cut(s) 556, 687, 1273
NlaIII CATG 8 cut(s) 210, 442, 488, 650, 1027, 1043, 1140, 1286
NlaIV GGNNCC 7 cut(s) 309, 630, 966, 1221, 1222, 1242, 1317
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 2 cut(s) 442, 1140
PagI TCATGA 1 cut(s) 1282
PciI ACATGT 2 cut(s) 438, 1136
PdmI GAANNNNTTC 2 cut(s) 844, 1245
PfeI GAWTC 3 cut(s) 52, 682, 1246
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 5 cut(s) 329, 370, 450, 1032, 1056
PleI GAGTC 2 cut(s) 19, 1184
PpsI GAGTC 2 cut(s) 19, 1184
PpuMI RGGWCCY 3 cut(s) 85, 307, 1220
PscI ACATGT 2 cut(s) 438, 1136
PshBI ATTAAT 1 cut(s) 420
Psp5II RGGWCCY 3 cut(s) 85, 307, 1220
Psp6I CCWGG 4 cut(s) 334, 631, 1108, 1311
PspGI CCWGG 4 cut(s) 334, 631, 1108, 1311
PspN4I GGNNCC 7 cut(s) 309, 630, 966, 1221, 1222, 1242, 1317
PspPI GGNCC 4 cut(s) 85, 307, 332, 1220
PspPPI RGGWCCY 3 cut(s) 85, 307, 1220
PstI CTGCAG 2 cut(s) 373, 450
PstNI CAGNNNCTG 1 cut(s) 1187
RsaI GTAC 4 cut(s) 146, 656, 834, 1061
RsaNI GTAC 4 cut(s) 145, 655, 833, 1060
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 3 cut(s) 420, 593, 1342
SatI GCNGC 5 cut(s) 328, 369, 449, 1031, 1055
Sau3AI GATC 3 cut(s) 556, 687, 1273
Sau96I GGNCC 4 cut(s) 85, 307, 332, 1220
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 2 cut(s) 19, 1184
ScrFI CCNGG 4 cut(s) 336, 633, 1110, 1313
SduI GDGCHC 1 cut(s) 138
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 6 cut(s) 184, 333, 469, 471, 478, 1174
SfcI CTRYAG 3 cut(s) 369, 446, 531
SinI GGWCC 3 cut(s) 85, 307, 1220
SmiMI CAYNNNNRTG 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 7 cut(s) 376, 417, 498, 723, 864, 979, 1295
SsiI CCGC 8 cut(s) 92, 127, 327, 330, 468, 1031, 1057, 1291
SspMI CTAG 3 cut(s) 717, 1119, 1206
StyD4I CCNGG 4 cut(s) 334, 631, 1108, 1311
StyI CCWWGG 2 cut(s) 206, 1329
TaaI ACNGT 2 cut(s) 704, 947
TaqI TCGA 4 cut(s) 48, 202, 559, 742
TasI AATT 7 cut(s) 376, 417, 498, 723, 864, 979, 1295
TatI WGTACW 2 cut(s) 144, 832
TauI GCSGC 2 cut(s) 330, 1033
TfiI GAWTC 3 cut(s) 52, 682, 1246
Tru1I TTAA 3 cut(s) 420, 593, 1342
Tru9I TTAA 3 cut(s) 420, 593, 1342
TscAI CASTG 4 cut(s) 387, 526, 893, 981
TseI GCWGC 3 cut(s) 368, 448, 1054
TspDTI ATGAA 7 cut(s) 279, 402, 470, 624, 1040, 1238, 1299
TspRI CASTG 4 cut(s) 387, 526, 893, 981
Van91I CCANNNNNTGG 1 cut(s) 317
Vha464I CTTAAG 1 cut(s) 592
VpaK11BI GGWCC 3 cut(s) 85, 307, 1220
VspI ATTAAT 1 cut(s) 420
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 1 cut(s) 1295
XbaI TCTAGA 1 cut(s) 1118
XceI RCATGY 2 cut(s) 442, 1140
XmiI GTMKAC 1 cut(s) 1020
XmnI GAANNNNTTC 2 cut(s) 844, 1245
XspI CTAG 3 cut(s) 717, 1119, 1206
ZrmI AGTACT 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.