Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009107

Physical Location & Seq

Genomic Coordinates Reverse (-)

29738733 .. 29742863

Gene Structure 4131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGGCGTCGGAGGTTCCCGTAGCAACAGTGACTCAGCGCAGCCAAAAGAGTGTAGAGAGCCAAGTCGGTCGTATCTACGAAGGCTTCGCCAAACTTCCCCCGGACGCCCAATTTCGAATGTTGGAACTTAAGCGTGAGAATCACATAGATTACCTAAAAGGGGGTCTCAGACAACTCCCAAGCTCCTTCTGCATTTTGGATGCCCTTCGACCGTGGGTTTGCTTTTGGAATTTGCACTCATTGGCTTTACTAGGAGAGTCTTTTGACGCCCAATTGCAAAACAACATCGTTGATTTCCTTTGCCGTTGTCAGGACCCAAATGGTGGTTATGGTGGCGGACCTGGACAGATGCCACATCTTGCAACAACTTATGCTGCTGTCTGTTCACTCGTTACTCTGGGTGGTCATAAAGCTCTTTCGTCAATTAATAGAAGTGAAATGTGCATGTTTCTACGACAAATGAAACACCCAAGTGGCGGCTTCAGGATTCATGATGGTGGAGAAATTGATGTCCGGGCCTGCTACGCTGCAATTTCTGTAGCAAGTATTTTGAACATTTTGGATGATGAACTCGTGCAGAATGTTGGAAACTACATCTTGAGTTGTCAGACTTATGAAGGTGGCATTTCTGCAGAACCTGGTACTGAAGCTCATGGCGGGTACACCTTCTGTGGGGTGGCAACGATGATTATGATCAATCAGGTCAATCAACTGGACTTGCCGAGACTAATTGATTGGTTGGTATTTCAACAAGGGAAGGAGTGCGGATTTAAGGGGAGGACTAATAAATTGGTTGATTGCTGCTACTCCTTCTGGCAGGGAGGTACTTTTGCATTACTACAAAGAGCATGTTCAACTATTGATCAACAACTGGTGATCCCCGTTGGGGGCAATACTTTTGAAGTAAATTTCAATGATATTGGTCATAATTTTGTAAAGAGAAGGGTAGAAATGGAGCCACTTTTTGATGGACGTGCATTGCAGCTATACTTACTTTTATGCTCACAGGAGGAGAATGGTGGATTAAAAGACAAACCTGGGAAATCCAGAGACTTCTATCACACGTGTTATGCTCTAAGTGGTCTTTCTGTAAGTCTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

369

Amino Acids

40.75

Weight (kDa)

5.86

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40280 AT5G40280
fragaria_vesca	FvH4_6g50640
malus_domestica	MD09G1034200.v1.1 MD17G1034700.v1.1
prunus_persica	Prupe.3G284100_v2.0.a1 Prupe.6G347800_v2.0.a1 Prupe.6G347800_v2.0.a1
pyrus_communis	pycom111g02720 pycom17g03200
rosa_chinensis	RchiOBHm_Chr2g0171441
rosa_laevigata	RLG00000022014
rosa_multiflora	Rmu_sc0030144.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080650
rosa_rugosa	Rorug02G0554300.1 Rorug02G0554400
rosa_samantha	Rh2AG628600 Rh2BG639000 Rh2CG607700 Rh2DG650100 Rh2DG656100
rosa_wichuraiana	Rw2G052070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	4 cut(s)	339, 480, 660, 768
AclWI	GGATC	1 cut(s)	874
AcsI	RAATTY	2 cut(s)	232, 910
AcuI	CTGAAG	2 cut(s)	469, 669
AcvI	CACGTG	1 cut(s)	1068
AcyI	GRCGYC	3 cut(s)	8, 108, 270
AfaI	GTAC	3 cut(s)	646, 665, 829
AfiI	CCNNNNNNNGG	7 cut(s)	163, 313, 326, 479, 675, 889, 890
AflII	CTTAAG	1 cut(s)	131
AflIII	ACRYGT	2 cut(s)	1065, 1067
AgsI	TTSAA	5 cut(s)	556, 752, 858, 905, 916
AjiI	CACGTC	1 cut(s)	977
AjnI	CCWGG	3 cut(s)	343, 640, 1039
AleI	CACNNNNGTG	1 cut(s)	474
AluBI	AGCT	4 cut(s)	186, 416, 653, 988
AluI	AGCT	4 cut(s)	186, 416, 653, 988
Alw26I	GTCTC	4 cut(s)	173, 721, 1047, 1103
AlwI	GGATC	1 cut(s)	874
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	5 cut(s)	42, 377, 530, 804, 985
ApoI	RAATTY	2 cut(s)	232, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AseI	ATTAAT	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	316, 341, 519
AsuC2I	CCSGG	2 cut(s)	104, 518
AsuHPI	GGTGA	1 cut(s)	889
AsuII	TTCGAA	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	316, 341
BauI	CACGAG	1 cut(s)	575
BbrPI	CACGTG	1 cut(s)	1068
BbvI	GCAGC	5 cut(s)	54, 364, 517, 791, 997
BccI	CCATC	2 cut(s)	491, 965
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	3 cut(s)	345, 642, 1041
BclI	TGATCA	2 cut(s)	696, 865
BcnI	CCSGG	2 cut(s)	104, 518
BcoDI	GTCTC	4 cut(s)	173, 721, 1047, 1103
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	540, 633
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	6 cut(s)	43, 378, 481, 531, 805, 986
BlsI	GCNGC	6 cut(s)	44, 379, 482, 532, 806, 987
Bme1390I	CCNGG	5 cut(s)	104, 345, 518, 642, 1041
Bme18I	GGWCC	2 cut(s)	316, 341
BmgBI	CACGTC	1 cut(s)	977
BmgT120I	GGNCC	3 cut(s)	316, 341, 519
BmiI	GGNNCC	3 cut(s)	18, 318, 960
BmrFI	CCNGG	5 cut(s)	104, 345, 518, 642, 1041
BmsI	GCATC	2 cut(s)	193, 342
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	622
BpuMI	CCSGG	2 cut(s)	104, 518
BsaAI	YACGTR	1 cut(s)	1068
BsaBI	GATNNNNATC	1 cut(s)	695
BsaHI	GRCGYC	3 cut(s)	8, 108, 270
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	102, 215, 1040
Bsc4I	CCNNNNNNNGG	7 cut(s)	163, 313, 326, 479, 675, 889, 890
Bse1I	ACTGG	2 cut(s)	720, 879
Bse3DI	GCAATG	1 cut(s)	980
Bse8I	GATNNNNATC	1 cut(s)	695
BseBI	CCWGG	3 cut(s)	345, 642, 1041
BseDI	CCNNGG	3 cut(s)	102, 215, 1040
BseGI	GGATG	2 cut(s)	208, 571
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	7 cut(s)	163, 313, 326, 479, 675, 889, 890
BseMI	GCAATG	1 cut(s)	980
BseMII	CTCAG	2 cut(s)	50, 184
BseNI	ACTGG	2 cut(s)	720, 879
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	5 cut(s)	54, 364, 517, 791, 997
BsgI	GTGCAG	1 cut(s)	599
Bsh1285I	CGRYCG	2 cut(s)	73, 215
BshFI	GGCC	1 cut(s)	521
BsiEI	CGRYCG	2 cut(s)	73, 215
BsiSI	CCGG	2 cut(s)	104, 517
BslI	CCNNNNNNNGG	7 cut(s)	163, 313, 326, 479, 675, 889, 890
BsmAI	GTCTC	4 cut(s)	173, 721, 1047, 1103
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	696, 865, 879
BspACI	CCGC	4 cut(s)	339, 480, 660, 768
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	2 cut(s)	49, 183
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	18, 318, 960
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	1 cut(s)	874
BspT104I	TTCGAA	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	980
BsrI	ACTGG	2 cut(s)	720, 879
BssECI	CCNNGG	3 cut(s)	102, 215, 1040
BssMI	GATC	3 cut(s)	696, 865, 879
BssNI	GRCGYC	3 cut(s)	8, 108, 270
BssSI	CACGAG	1 cut(s)	575
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	3 cut(s)	345, 642, 1041
Bst4CI	ACNGT	2 cut(s)	31, 216
BstACI	GRCGYC	3 cut(s)	8, 108, 270
BstAFI	CTTAAG	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	1068
BstBI	TTCGAA	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	3 cut(s)	36, 170, 1079
BstDSI	CCRYGG	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	208, 571
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	699, 868, 882
BstMAI	GTCTC	4 cut(s)	173, 721, 1047, 1103
BstMBI	GATC	3 cut(s)	696, 865, 879
BstMCI	CGRYCG	2 cut(s)	73, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 527
BstNI	CCWGG	3 cut(s)	345, 642, 1041
BstNSI	RCATGY	2 cut(s)	451, 855
BstSCI	CCNGG	5 cut(s)	102, 343, 516, 640, 1039
BstSFI	CTRYAG	2 cut(s)	540, 633
BstV1I	GCAGC	5 cut(s)	54, 364, 517, 791, 997
BsuRI	GGCC	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	977
BtsCI	GGATG	2 cut(s)	208, 571
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	523
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	316, 341, 519
CseI	GACGC	2 cut(s)	116, 278
CsiI	ACCWGGT	1 cut(s)	640
Csp6I	GTAC	3 cut(s)	645, 664, 828
CviAII	CATG	4 cut(s)	448, 494, 656, 852
CviQI	GTAC	3 cut(s)	645, 664, 828
DdeI	CTNAG	3 cut(s)	36, 170, 1079
DpnI	GATC	3 cut(s)	698, 867, 881
DpnII	GATC	3 cut(s)	696, 865, 879
EciI	GGCGGA	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	316, 341
Eco57I	CTGAAG	2 cut(s)	469, 669
Eco72I	CACGTG	1 cut(s)	1068
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	343, 640, 1039
FaeI	CATG	4 cut(s)	451, 497, 659, 855
FatI	CATG	4 cut(s)	447, 493, 655, 851
FauI	CCCGC	1 cut(s)	653
FbaI	TGATCA	2 cut(s)	696, 865
Fnu4HI	GCNGC	6 cut(s)	43, 378, 481, 531, 805, 986
FokI	GGATG	2 cut(s)	215, 578
Fsp4HI	GCNGC	6 cut(s)	43, 378, 481, 531, 805, 986
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	6 cut(s)	43, 378, 481, 531, 805, 986
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	2 cut(s)	104, 517
HgaI	GACGC	2 cut(s)	116, 278
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	3 cut(s)	8, 108, 270
Hin1II	CATG	4 cut(s)	451, 497, 659, 855
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	34, 142, 260, 490
HpaII	CCGG	2 cut(s)	104, 517
HphI	GGTGA	1 cut(s)	889
Hpy166II	GTNNAC	2 cut(s)	389, 666
Hpy188I	TCNGA	3 cut(s)	13, 173, 612
Hpy188III	TCNNGA	5 cut(s)	314, 487, 494, 601, 1050
Hpy8I	GTNNAC	2 cut(s)	389, 666
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	8 cut(s)	77, 199, 218, 614, 679, 754, 823, 939
HpyCH4III	ACNGT	2 cut(s)	31, 216
HpyCH4IV	ACGT	2 cut(s)	976, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 527
HpyF3I	CTNAG	3 cut(s)	36, 170, 1079
HpySE526I	ACGT	2 cut(s)	976, 1067
Hsp92I	GRCGYC	3 cut(s)	8, 108, 270
Hsp92II	CATG	4 cut(s)	451, 497, 659, 855
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	2 cut(s)	696, 865
Kzo9I	GATC	3 cut(s)	696, 865, 879
LmnI	GCTCC	2 cut(s)	191, 958
Lsp1109I	GCAGC	5 cut(s)	54, 364, 517, 791, 997
LweI	GCATC	2 cut(s)	193, 342
MabI	ACCWGGT	1 cut(s)	640
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	2 cut(s)	976, 1067
MaeIII	GTNAC	2 cut(s)	31, 394
MalI	GATC	3 cut(s)	698, 867, 881
MboI	GATC	3 cut(s)	696, 865, 879
MfeI	CAATTG	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	28, 269
MmeI	TCCRAC	2 cut(s)	105, 568
MnlI	CCTC	4 cut(s)	7, 774, 818, 1006
MseI	TTAA	4 cut(s)	132, 429, 774, 1028
MslI	CAYNNNNRTG	2 cut(s)	474, 498
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	2 cut(s)	104, 517
MspR9I	CCNGG	5 cut(s)	104, 345, 518, 642, 1041
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	3 cut(s)	345, 642, 1041
MwoI	GCNNNNNNNGC	2 cut(s)	192, 527
NciI	CCSGG	2 cut(s)	104, 518
NdeII	GATC	3 cut(s)	696, 865, 879
NlaIII	CATG	4 cut(s)	451, 497, 659, 855
NlaIV	GGNNCC	3 cut(s)	18, 318, 960
NmeAIII	GCCGAG	1 cut(s)	750
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	2 cut(s)	451, 855
NspV	TTCGAA	1 cut(s)	118
OliI	CACNNNNGTG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	142, 490
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	6 cut(s)	44, 379, 482, 532, 806, 987
PleI	GAGTC	2 cut(s)	28, 268
PmaCI	CACGTG	1 cut(s)	1068
PmlI	CACGTG	1 cut(s)	1068
PpsI	GAGTC	2 cut(s)	28, 268
Ppu21I	YACGTR	1 cut(s)	1068
PpuMI	RGGWCCY	1 cut(s)	316
PshBI	ATTAAT	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	3 cut(s)	343, 640, 1039
PspCI	CACGTG	1 cut(s)	1068
PspGI	CCWGG	3 cut(s)	343, 640, 1039
PspN4I	GGNNCC	3 cut(s)	18, 318, 960
PspPI	GGNCC	3 cut(s)	316, 341, 519
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	641
RsaI	GTAC	3 cut(s)	646, 665, 829
RsaNI	GTAC	3 cut(s)	645, 664, 828
RseI	CAYNNNNRTG	2 cut(s)	474, 498
SaqAI	TTAA	4 cut(s)	132, 429, 774, 1028
SatI	GCNGC	6 cut(s)	43, 378, 481, 531, 805, 986
Sau3AI	GATC	3 cut(s)	696, 865, 879
Sau96I	GGNCC	3 cut(s)	316, 341, 519
SchI	GAGTC	2 cut(s)	28, 269
ScrFI	CCNGG	5 cut(s)	104, 345, 518, 642, 1041
SexAI	ACCWGGT	1 cut(s)	640
SfaNI	GCATC	2 cut(s)	193, 342
SfcI	CTRYAG	2 cut(s)	540, 633
SfuI	TTCGAA	1 cut(s)	118
SinI	GGWCC	2 cut(s)	316, 341
SmiMI	CAYNNNNRTG	2 cut(s)	474, 498
SmlI	CTYRAG	2 cut(s)	131, 601
SmoI	CTYRAG	2 cut(s)	131, 601
SsiI	CCGC	4 cut(s)	339, 480, 660, 768
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	5 cut(s)	102, 343, 516, 640, 1039
TaaI	ACNGT	2 cut(s)	31, 216
TaiI	ACGT	2 cut(s)	979, 1070
TaqI	TCGA	2 cut(s)	118, 211
TaqII	GACCGA	1 cut(s)	59
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	142, 490
Tru1I	TTAA	4 cut(s)	132, 429, 774, 1028
Tru9I	TTAA	4 cut(s)	132, 429, 774, 1028
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	5 cut(s)	42, 377, 530, 804, 985
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	479, 482, 585, 633
TspRI	CASTG	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	316, 341
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	2 cut(s)	232, 910
XceI	RCATGY	2 cut(s)	451, 855
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.