MD17G1038000.v1.1

DNA repair protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
2766068 .. 2774885
8818 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1038000.v1.1.491

Sequence Viewer

Length: 4965 bp
ATGGGAGTCCACGGTCTCTGGGAACTACTGGCCCCCGTCGGCCGCCGCGTCTCTGTCGAAACTCTAGCCGGAAGAAGACTCGCAATCGATGCGAGCATATGGATGATACAGTTCATGAAGGCAATGCGGGACGAGAAGGGAGAGATGGTCCGCAACGCGCATTTGCTCGGCTTCTTCCGCCGAATTTGCAAGCTGCTGTACCTGCGGACCAAGCCGGTGTTTGTGTTTGACGGCGGAACCCCGGCCCTCAAGCGCCGGACTGTGATCGCTCGGAGAAGACAACGGGAGAACGCCCAGTCCAAGCTTCGCAAGACCGCCGAGAAATTGCTTCTTAATCATCTTAAGGTGATGAGGCTGAAAGACTTGGCTGCGGATATCAAGAACCAGAGGCAGAAGAATGATGCCGAGGGTAAAGAAGGTCTAACAAATCAGACCGGTAGGATGGCGGATAATAGTTTTGAAGAAGACGACTTGGGTTTGCTGAGTAGCAACCAGGAAAAGCTGGATGAAATGTTGGCAGCATCCATCCAGGCCGAGGAAGAAGGGGGTTTTATAAAGAATGCATCACAATCTACTGCTGCTGAGGATGGTGAAGAAGATGATGAAGAGATGATACTACCAGAGATGGATGGTGAAGTTGATCCAGCTGTATTAGCTAGTTTGCCTTCATCAATGCAACATAGACTTCTTTTGCAGAAAAATAAGGAGGAAAATGATGCTAAGGGTAAGAAGATTTTGTCAGATGAAACTGAGATGTTGGGTATCAATTCAGAAAACTTCGACACAGTCTCAAGGAGTTGCAATCAAGAGATGATAGATGAAATGATTGCTGCGTCTATTGCGGCAGAGAAGGATGCTGGTGTAACTAATAATGCGTCAACATCAACTGCTTCTATTCTTGTGGGGGACGATATCTATGAAGATGACGATGCCGATGAAGAGATGATATTGCCTGCACTGCATGGTGAAGTTGATCCAGCTGTATTAGCTGCATTGCCCCCATCAATGCAACTCAATCTTCTTGTTCAAATTAGAGAGAGGTTGATGGCGGAAAACAGACAGAAGTATCAGAAAGTCAAAAAGGACCCTGAAAAGTTCTCTGAGCTGCAAATACAATCCTATCTTAAAACTGTTGCTTTTCGTCGCGAGATAGATCAAGTACAGAAAGCTGCCTCTGGGAGAGGGGTTAGTGGTGTGCAGAGTTCACGAATAGCCTCTGAAGCCCACAGAGAATTTATCTTTTCTTCATCATTTACTGGTGATAAACAAGTACTTGCATCTGCAAGAGCTGATAGAAATGGAGAAAAGCAACAAGCACCCAAAGAGTGTCCTTCAAAATTCAGGAACAGTGCTTCGTCTACCAGTAATGTGACTGGATCAGCTCCAGATGAATCCACAAGTGTTTTTGATGACAACATTGAGACATATTTGGATGAGAGGGGCCATCTTCGAGTCAGTAGAGTGAGAGCTATGGGGATGCGTATGACCCGTGATTTACAGAGGAACTTGGATTTGATGAAGGAGATTGAACGGGAGAAAACAATTGCAAACAAGACGACTGACACTAGGGATATGCTCAACGAAAATAGCATTGACATTTTGAAAAGTTCACGTAGATATAGAACAGTCACAGAAATACCAAGAGGTGATAATGGTGATTCTGTTGATACTGGAGGGGTGAGAAAGCATCCTGGTCAGAACAAGGTTGACTCCTCACTTGGTGATAATAACTCAAATGACAGAAATAATCAGTCTATGTTAAAACTTGAAACTCCTATAGAAATATCTATTGAAGACAATGGCGAGAGCAAGTCATTTGATGGTGATCATGATTTTTTTGCTTCGTTAGTAGCAGGAAATCCTGTAACTATTGATGCTAATGATATATTAAAAAAGCATTTTTCTGGGTCTGACTCAGACTGTGACTGGGAGGAAGGGATTGTTGAAGCAAAAGGTAGCAGTTTTCCTAATGACTCTGAAGTTAAAAGTAAGGTGCCAGGCGATATTAATGATGACAGTGAAGTGGAATGGGAGGAAGGAGTTTGTGGTAGTGCTGAAAATACCTCATCTGTTCCTGGTGAGCATGGAAAAACAAATTCTAAAGGTTATTTCGAAGAAGAGGCTAGTTTGCAGGAGGCAATACGGAGAAGTCTTGAGGATATGGGGAGTGACAAGGGTAATTATGGATCACCTGCTGATGAAAAGTTGCAATGTTTTGGAGGAGAGGCTCATAAAGGTGCTGAATGTATTGATAGAGAAATTAAGATAGTTGAACCAGTTTTGTTGGGGAAGATTGGTACTCAACAAAATGAATCATCCTGTGACATTGGTGATGGAGTCAAAAAGACGAACTTGGGTTCTCCTCCAGCACAAGCAATGCAGAATGTAAGTGAAAAGGAAAATTTCTGTGGAGGAGTGCAATGCACAGCATCTATTACTCCGTCAGCGACAAAGGAGGTCCATGTGATTACTGAACAAGTATTGGGTACTTTCCATGGTGATGGTGGTTTATCCACCTTTCCCGAGAACATTGAAAAAAATAATGCTTATTCTTCGGATGCCTTGTCAGGTGATGCTACTGGTTGGGTTGATGATCAGAAGACTGAAGTTGAAGCTGAGTCATCTTGTCATTTAGTTGAGATGGCTAACTCTGAGTCATTGACAAAAAAGATAACAAATGACAGTGATGCTGACAAAAAATGGGGCAAGGAAAAGAGCCATGACATTTGTTTTCAGGAAAGTGAGCACAGTTGGGACATATCTTCTCTCAAGGGTGATGAGAATGCACGTATGGAAGCCACAGAGGCTGATTTGGAGGAGGAAATGCTAATTCTAGACCAAGAATGTATGGATCTGGGTGATGAGCGAAGAAGGCTTGAACGTAACGTAGAATCTGTCAGCAGTGAAATGTTCACCGAATGTCAGGAGCTACTGCAAATTTTTGGTATACCATACATTATTGCACCAATGGAAGCAGAAGCCCAGTGTGCGTATATGGAACTTGCCAACCTTGTTGATGGTGTGGTAACTGATGATTCTGATGTGTTCTTGTTTGGGGCACGAAGTGTTTACAAAAATATATTCGACGATCGGAAGTATGTTGAGACATATTTCATGAAGGATGTTGAGAATGAGCTTGGCCTAAGCAGAGAGAAATTAATTCGTATGGCACTTCTTCTTGGAAGTGATTATACTGAAGGAGTTAGTGGGATCGGCATTGTCAATGCTATGGAAGTTGTAAATGCATTTCCTGAGGAGGATGGCCTCCATAAATTCCGGGATTGGATTGAATCACCAGATCCTACCATTCTAGGGACGTTTGATGGAGAAATAGGATCTAATGCAAAGAAAAGGGGGTCTAAATTTGGAGATAAGGATATCAATACGAAGAGCGGTATGGAAGAAGTCTCTGAGCAAAATAGTTGTCACGGACAAGAGCACCAGCAGTCAGCTGATCTTATTGAAGAAACAAAGCAAACTTTCATGGATAAGCATAGAAAAGTGAGCAAAAATTGGCATATTCCCCCCACTTTCCCAAGTGAAGCAGTGACTTCTGCTTATATTTGTCCACAGGTGGACAAATCAACTGAACCCTTCACATGGGGAAAGCCAGATCATTTTTTTCTTCGCAAATTATGTTCGGAAAAGTTTGGCTGGGCTAGCCAGAAGGCAGATGAATTGCTAATACCTGTTCTGAACGAGTACAACAAACGCGAGACTCAACTGCGGCTGGAAGCTTTTTACACTTTTAATGAAAGATTTGCAAAAATTCGTAGTAAGAGAATCAAGAAAGCTGTAAAAGGAATTGCAGGAAATCAATCTTCAGAGTTGGTGGATGATGCTGCACATAAAGTTTCAAGAAGCAGAAAGAAGAGAACCACAAGTACTGATGAAGCTGGGAATAACAAATCAGAGAAACTGTCAGAGGGAACAGATAAAAGTGTTCTTAAGAAGCAGAGCGATTCTAAGGGAAAATCAACAGCTAAGCAGTCGAGGAAAAGGAGGACCACTGAAGAGCCTGCTCCATCTAAGCGACCAAAGCCTGCTGAAGCTGGACGATCAACCAATAGAAAATTGCATGCGAATGGAAACGAAAGAGGAAGAGGCAGGAGGGTATTAGGAAGTGGAAAGGAAAAGGTAAATCCCAATTTTGAAGTATCTGAAACCAGCTCTGGCAATGGTGATGACGATAATGATGGGATGGACCTTCATACCGATACAATAGAAGGGTTGGGAGAAATGCGCAGGTCTGGGCGTCTGCGGAAGCCTGTAAATTACACAGTCGATGACTTAGACGTTGATGATCTTGGTGAGCCACTAGATCACAGTAATGCAAAATGCTCCAATGCAGAGACAGGGGAACAAGTTATATCTCGGGATGAAGGAAAATGCGAAGAAAGTGCTTCTTCTCTCAGCGAAAAGAAACAGCAGAATGAAGGGAACTTGTCTCCCAATGTGGGCCTGCATAAAGATTATCTTGAAACAGGAGGTGGGTTCTGCCCGGTTGAAGATGAAACTGGTGAACCAGGTTTAAGCCAACATGGTGATCCTTCTTTCGGGGCTGAGGTTTCTGAAGACTACCTTAAGACAGGAGGGGGGTTTTGCGGAGATGAAAGTGAGACTGGTAATGACCAAGATGGAATTCGTGTTCAAACGAAAACAACAGCTTCAGAGAATTCTGATCTTCCCAGTTTCTCTGGCATTGTCAACATGGTTGATCTTGGTCATATTTCATCTCAATCCAGCATCGGCAACAAAAGACCATTAGTCGGATTTCAAAGTAGTGAGAGGACAGATGCCTATGATACCGAACAGAATATAAATCATGAGACTGCTACAATTACCGATGATCAAACGAAGGTCAATGCGTCATTGCCGGAAAATAGCGTGGATAATTCTCGGCAGCCATCCGGGGGAGCTCTGAGTGCAATGCCTTTCCTGAGGAAAAAAAGGAGGAAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1655

Amino Acids

182.8

Weight (kDa)

4.95

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XPG_N PF00752 1 - 97 2.3e-29 XPG N-terminal domain
XPG_I PF00867 982 - 1063 2.1e-27 XPG I-region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
AarI CACCTGC 1 cut(s) 2200
Acc16I TGCGCA 1 cut(s) 4244
Acc36I ACCTGC 3 cut(s) 210, 2200, 4236
AccB1I GGYRCC 1 cut(s) 1993
AccBSI CCGCTC 1 cut(s) 3393
AccI GTMKAC 2 cut(s) 1358, 2947
AccII CGCG 4 cut(s) 48, 158, 1146, 3714
AclWI GGATC 9 cut(s) 635, 968, 1384, 2194, 2859, 3218, 3293, 3343, 4541
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 9 cut(s) 1239, 1998, 2625, 3216, 3807, 4032, 4068, 4593, 4653
AcyI GRCGYC 1 cut(s) 4255
AdeI CACNNNGTG 2 cut(s) 1721, 3065
AfaI GTAC 7 cut(s) 200, 1161, 1272, 2299, 2488, 3704, 3886
AfiI CCNNNNNNNGG 7 cut(s) 535, 3312, 3600, 4457, 4556, 4769, 4913
AflII CTTAAG 3 cut(s) 341, 3947, 4583
AgeI ACCGGT 1 cut(s) 434
AhdI GACNNNNNGTC 1 cut(s) 4766
AjnI CCWGG 6 cut(s) 492, 528, 1690, 1996, 2074, 4525
AjuI GAANNNNNNNTTGG 2 cut(s) 4626, 4658
AloI GAACNNNNNNTCC 4 cut(s) 281, 313, 4632, 4664
Alw21I GWGCWC 3 cut(s) 2748, 3441, 4921
AlwI GGATC 9 cut(s) 635, 968, 1384, 2194, 2859, 3218, 3293, 3343, 4541
AlwNI CAGNNNCTG 1 cut(s) 2807
Ama87I CYCGRG 2 cut(s) 2522, 4374
AoxI GGCC 8 cut(s) 30, 40, 243, 531, 1441, 3139, 3262, 4459
ArsI GACNNNNNNTTYG 2 cut(s) 3409, 3441
AseI ATTAAT 2 cut(s) 2007, 3158
AsiGI ACCGGT 1 cut(s) 434
AspLEI GCGC 3 cut(s) 160, 255, 4245
AsuC2I CCSGG 4 cut(s) 242, 3278, 4502, 4912
AsuII TTCGAA 1 cut(s) 2112
AsuNHI GCTAGC 1 cut(s) 3659
AvaI CYCGRG 2 cut(s) 2522, 4374
AvaII GGWCC 6 cut(s) 148, 207, 1084, 2458, 4005, 4204
AxyI CCTNAGG 2 cut(s) 3252, 4940
BaeGI GKGCMC 1 cut(s) 3061
BaeI ACNNNNGTAYC 2 cut(s) 1049, 1082
BanI GGYRCC 1 cut(s) 1993
BanII GRGCYC 1 cut(s) 4921
BarI GAAGNNNNNNTAC 4 cut(s) 597, 629, 3175, 3207
BbsI GAAGAC 6 cut(s) 82, 283, 471, 1800, 2606, 4581
Bbv12I GWGCWC 3 cut(s) 2748, 3441, 4921
BbvCI CCTCAGC 2 cut(s) 582, 4563
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 4382, 4416
BciT130I CCWGG 6 cut(s) 494, 530, 1692, 1998, 2076, 4527
BclI TGATCA 3 cut(s) 1825, 2593, 4849
BcnI CCSGG 4 cut(s) 242, 3278, 4502, 4912
BfaI CTAG 8 cut(s) 65, 657, 1566, 2124, 2834, 3311, 3660, 4319
BfmI CTRYAG 1 cut(s) 1776
BfoI RGCGCY 1 cut(s) 256
BfrI CTTAAG 3 cut(s) 341, 3947, 4583
BfuAI ACCTGC 3 cut(s) 210, 2200, 4236
BglI GCCNNNNNGGC 1 cut(s) 2804
BlpI GCTNAGC 1 cut(s) 3984
BmcAI AGTACT 2 cut(s) 1272, 3886
Bme18I GGWCC 6 cut(s) 148, 207, 1084, 2458, 4005, 4204
BmeRI GACNNNNNGTC 1 cut(s) 4766
BmeT110I CYCGRG 2 cut(s) 2522, 4374
BmiI GGNNCC 5 cut(s) 33, 238, 1086, 1442, 1995
BmrI ACTGGG 4 cut(s) 289, 1936, 2977, 4683
BmtI GCTAGC 1 cut(s) 3663
BmuI ACTGGG 4 cut(s) 289, 1936, 2977, 4683
BpiI GAAGAC 6 cut(s) 82, 283, 471, 1800, 2606, 4581
BpmI CTGGAG 3 cut(s) 1368, 1692, 2349
Bpu10I CCTNAGC 4 cut(s) 582, 720, 3143, 4563
Bpu1102I GCTNAGC 1 cut(s) 3984
Bpu14I TTCGAA 1 cut(s) 2112
BpuEI CTTGAG 4 cut(s) 233, 775, 2174, 2753
BpuMI CCSGG 4 cut(s) 242, 3278, 4502, 4912
Bsa29I ATCGAT 1 cut(s) 87
BsaAI YACGTR 2 cut(s) 1613, 2789
BsaBI GATNNNNATC 1 cut(s) 1824
BsaHI GRCGYC 1 cut(s) 4255
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 6 cut(s) 10, 240, 405, 534, 2494, 4911
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 7 cut(s) 535, 3312, 3600, 4457, 4556, 4769, 4913
Bse118I RCCGGY 2 cut(s) 214, 434
Bse21I CCTNAGG 2 cut(s) 3252, 4940
Bse3DI GCAATG 8 cut(s) 129, 992, 2216, 2382, 2426, 4183, 4871, 4935
Bse8I GATNNNNATC 1 cut(s) 1824
BseBI CCWGG 6 cut(s) 494, 530, 1692, 1998, 2076, 4527
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 6 cut(s) 10, 240, 405, 534, 2494, 4911
BseJI GATNNNNATC 1 cut(s) 1824
BseLI CCNNNNNNNGG 7 cut(s) 535, 3312, 3600, 4457, 4556, 4769, 4913
BseMI GCAATG 8 cut(s) 129, 992, 2216, 2382, 2426, 4183, 4871, 4935
BseRI GAGGAG 6 cut(s) 1702, 2235, 2352, 2427, 2831, 3269
BseSI GKGCMC 1 cut(s) 3061
BseX3I CGGCCG 1 cut(s) 40
BseYI CCCAGC 2 cut(s) 3654, 3896
BsgI GTGCAG 3 cut(s) 939, 1217, 3828
Bsh1236I CGCG 4 cut(s) 48, 158, 1146, 3714
Bsh1285I CGRYCG 2 cut(s) 43, 3091
BshFI GGCC 8 cut(s) 32, 42, 245, 533, 1443, 3141, 3264, 4461
BshNI GGYRCC 1 cut(s) 1993
BshTI ACCGGT 1 cut(s) 434
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 2 cut(s) 43, 3091
BsiHKAI GWGCWC 3 cut(s) 2748, 3441, 4921
BsiHKCI CYCGRG 2 cut(s) 2522, 4374
BsiSI CCGG 9 cut(s) 69, 215, 242, 256, 435, 3277, 4502, 4877, 4911
BslFI GGGAC 4 cut(s) 143, 920, 2768, 3328
BslI CCNNNNNNNGG 7 cut(s) 535, 3312, 3600, 4457, 4556, 4769, 4913
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 4 cut(s) 143, 920, 2768, 3328
BsmI GAATGC 2 cut(s) 565, 2788
BsnI GGCC 8 cut(s) 32, 42, 245, 533, 1443, 3141, 3264, 4461
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 2 cut(s) 2522, 4374
Bsp119I TTCGAA 1 cut(s) 2112
Bsp1286I GDGCHC 4 cut(s) 2748, 3061, 3441, 4921
Bsp1720I GCTNAGC 1 cut(s) 3984
Bsp19I CCATGG 1 cut(s) 2494
Bsp68I TCGCGA 1 cut(s) 1146
BspANI GGCC 8 cut(s) 32, 42, 245, 533, 1443, 3141, 3264, 4461
BspDI ATCGAT 1 cut(s) 87
BspFNI CGCG 4 cut(s) 48, 158, 1146, 3714
BspHI TCATGA 4 cut(s) 114, 1828, 3114, 4825
BspLI GGNNCC 5 cut(s) 33, 238, 1086, 1442, 1995
BspMI ACCTGC 3 cut(s) 210, 2200, 4236
BspOI GCTAGC 1 cut(s) 3663
BspPI GGATC 9 cut(s) 635, 968, 1384, 2194, 2859, 3218, 3293, 3343, 4541
BspQI GCTCTTC 2 cut(s) 3383, 4008
BspT104I TTCGAA 1 cut(s) 2112
BspT107I GGYRCC 1 cut(s) 1993
BspTI CTTAAG 3 cut(s) 341, 3947, 4583
BspTNI GGTCTC 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 3393
BsrDI GCAATG 8 cut(s) 129, 992, 2216, 2382, 2426, 4183, 4871, 4935
BsrFI RCCGGY 2 cut(s) 214, 434
BssAI RCCGGY 2 cut(s) 214, 434
BssECI CCNNGG 6 cut(s) 10, 240, 405, 534, 2494, 4911
BssNAI GTATAC 1 cut(s) 2948
BssNI GRCGYC 1 cut(s) 4255
BssT1I CCWWGG 1 cut(s) 2494
Bst1107I GTATAC 1 cut(s) 2948
Bst2UI CCWGG 6 cut(s) 494, 530, 1692, 1998, 2076, 4527
Bst6I CTCTTC 7 cut(s) 600, 933, 2112, 3383, 3866, 4008, 4096
BstACI GRCGYC 1 cut(s) 4255
BstAFI CTTAAG 3 cut(s) 341, 3947, 4583
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBAI YACGTR 2 cut(s) 1613, 2789
BstBI TTCGAA 1 cut(s) 2112
BstC8I GCNNGC 8 cut(s) 94, 191, 954, 3661, 4020, 4044, 4080, 4463
BstDSI CCRYGG 2 cut(s) 10, 2494
BstFNI CGCG 4 cut(s) 48, 158, 1146, 3714
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 3 cut(s) 160, 255, 4245
BstMCI CGRYCG 2 cut(s) 43, 3091
BstNI CCWGG 6 cut(s) 494, 530, 1692, 1998, 2076, 4527
BstNSI RCATGY 1 cut(s) 4082
BstSFI CTRYAG 1 cut(s) 1776
BstSLI GKGCMC 1 cut(s) 3061
BstUI CGCG 4 cut(s) 48, 158, 1146, 3714
BstV2I GAAGAC 6 cut(s) 82, 283, 471, 1800, 2606, 4581
BstX2I RGATCY 3 cut(s) 2851, 3298, 3335
BstXI CCANNNNNNTGG 1 cut(s) 2501
BstYI RGATCY 3 cut(s) 2851, 3298, 3335
BstZ17I GTATAC 1 cut(s) 2948
BstZI CGGCCG 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 87
Bsu36I CCTNAGG 2 cut(s) 3252, 4940
BsuRI GGCC 8 cut(s) 32, 42, 245, 533, 1443, 3141, 3264, 4461
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 2 cut(s) 10, 2494
BtsI GCAGTG 3 cut(s) 956, 2908, 3552
BtsIMutI CAGTG 8 cut(s) 956, 1354, 2023, 2689, 2908, 2990, 3552, 4008
BtuMI TCGCGA 1 cut(s) 1146
BveI ACCTGC 3 cut(s) 210, 2200, 4236
Cac8I GCNNGC 8 cut(s) 94, 191, 954, 3661, 4020, 4044, 4080, 4463
CaiI CAGNNNCTG 1 cut(s) 2807
CciI TCATGA 4 cut(s) 114, 1828, 3114, 4825
CfoI GCGC 3 cut(s) 160, 255, 4245
Cfr10I RCCGGY 2 cut(s) 214, 434
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 5 cut(s) 37, 822, 864, 4244, 4857
CsiI ACCWGGT 1 cut(s) 4525
Csp6I GTAC 7 cut(s) 199, 1160, 1271, 2298, 2487, 3703, 3885
CspAI ACCGGT 1 cut(s) 434
CviQI GTAC 7 cut(s) 199, 1160, 1271, 2298, 2487, 3703, 3885
DraIII CACNNNGTG 2 cut(s) 1721, 3065
DriI GACNNNNNGTC 1 cut(s) 4766
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 7 cut(s) 600, 933, 2112, 3383, 3866, 4008, 4096
Eam1105I GACNNNNNGTC 1 cut(s) 4766
EarI CTCTTC 7 cut(s) 600, 933, 2112, 3383, 3866, 4008, 4096
EciI GGCGGA 4 cut(s) 167, 249, 461, 1064
Ecl136II GAGCTC 1 cut(s) 4919
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 2494
Eco24I GRGCYC 1 cut(s) 4921
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 3 cut(s) 376, 913, 3379
Eco47I GGWCC 6 cut(s) 148, 207, 1084, 2458, 4005, 4204
Eco52I CGGCCG 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 4919
Eco57I CTGAAG 9 cut(s) 1239, 1998, 2625, 3216, 3807, 4032, 4068, 4593, 4653
Eco81I CCTNAGG 2 cut(s) 3252, 4940
Eco88I CYCGRG 2 cut(s) 2522, 4374
EcoICRI GAGCTC 1 cut(s) 4919
EcoO109I RGGNCCY 1 cut(s) 1084
EcoRI GAATTC 2 cut(s) 4641, 4675
EcoRII CCWGG 6 cut(s) 492, 528, 1690, 1996, 2074, 4525
EcoRV GATATC 3 cut(s) 376, 913, 3379
EcoT14I CCWWGG 1 cut(s) 2494
EcoT22I ATGCAT 2 cut(s) 565, 3247
EcoT38I GRGCYC 1 cut(s) 4921
ErhI CCWWGG 1 cut(s) 2494
Esp3I CGTCTC 1 cut(s) 55
FalI AAGNNNNNCTT 8 cut(s) 2336, 2368, 4390, 4422, 4461, 4493, 4566, 4598
FaqI GGGAC 4 cut(s) 143, 920, 2768, 3328
FauI CCCGC 1 cut(s) 120
FauNDI CATATG 1 cut(s) 98
FbaI TGATCA 3 cut(s) 1825, 2593, 4849
FblI GTMKAC 2 cut(s) 1358, 2947
FriOI GRGCYC 1 cut(s) 4921
FspBI CTAG 8 cut(s) 65, 657, 1566, 2124, 2834, 3311, 3660, 4319
FspI TGCGCA 1 cut(s) 4244
GlaI GCGC 3 cut(s) 159, 254, 4244
GsaI CCCAGC 2 cut(s) 3658, 3900
GsuI CTGGAG 3 cut(s) 1368, 1692, 2349
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 8 cut(s) 32, 42, 245, 533, 1443, 3141, 3264, 4461
HapII CCGG 9 cut(s) 69, 215, 242, 256, 435, 3277, 4502, 4877, 4911
HgaI GACGC 5 cut(s) 37, 822, 864, 4244, 4857
HhaI GCGC 3 cut(s) 160, 255, 4245
Hin1I GRCGYC 1 cut(s) 4255
Hin6I GCGC 3 cut(s) 158, 253, 4243
HinP1I GCGC 3 cut(s) 158, 253, 4243
HincII GTYRAC 3 cut(s) 879, 1708, 4708
HindII GTYRAC 3 cut(s) 879, 1708, 4708
HindIII AAGCTT 2 cut(s) 302, 3735
HpaII CCGG 9 cut(s) 69, 215, 242, 256, 435, 3277, 4502, 4877, 4911
Hpy99I CGWCG 3 cut(s) 41, 1146, 3089
HpyCH4IV ACGT 6 cut(s) 1612, 2788, 2881, 2886, 3317, 4296
HpySE526I ACGT 6 cut(s) 1612, 2788, 2881, 2886, 3317, 4296
Hsp92I GRCGYC 1 cut(s) 4255
HspAI GCGC 3 cut(s) 158, 253, 4243
Ksp22I TGATCA 3 cut(s) 1825, 2593, 4849
LguI GCTCTTC 2 cut(s) 3383, 4008
LmnI GCTCC 5 cut(s) 1387, 2926, 4027, 4346, 4916
MabI ACCWGGT 1 cut(s) 4525
MaeI CTAG 8 cut(s) 65, 657, 1566, 2124, 2834, 3311, 3660, 4319
MaeII ACGT 6 cut(s) 1612, 2788, 2881, 2886, 3317, 4296
MbiI CCGCTC 1 cut(s) 3393
MfeI CAATTG 1 cut(s) 1542
MflI RGATCY 3 cut(s) 2851, 3298, 3335
MhlI GDGCHC 4 cut(s) 2748, 3061, 3441, 4921
MmeI TCCRAC 1 cut(s) 4750
Mph1103I ATGCAT 2 cut(s) 565, 3247
MslI CAYNNNNRTG 5 cut(s) 101, 2235, 2499, 4083, 4329
MspA1I CMGCKG 3 cut(s) 647, 980, 3452
MspCI CTTAAG 3 cut(s) 341, 3947, 4583
MspI CCGG 9 cut(s) 69, 215, 242, 256, 435, 3277, 4502, 4877, 4911
MunI CAATTG 1 cut(s) 1542
Mva1269I GAATGC 2 cut(s) 565, 2788
MvaI CCWGG 6 cut(s) 494, 530, 1692, 1998, 2076, 4527
MvnI CGCG 4 cut(s) 48, 158, 1146, 3714
NciI CCSGG 4 cut(s) 242, 3278, 4502, 4912
NcoI CCATGG 1 cut(s) 2494
NdeI CATATG 1 cut(s) 98
NheI GCTAGC 1 cut(s) 3659
NlaIV GGNNCC 5 cut(s) 33, 238, 1086, 1442, 1995
NmeAIII GCCGAG 5 cut(s) 147, 343, 430, 559, 4879
NmuCI GTSAC 7 cut(s) 1369, 1627, 1922, 2168, 2321, 3425, 3547
NruI TCGCGA 1 cut(s) 1146
NsbI TGCGCA 1 cut(s) 4244
NsiI ATGCAT 2 cut(s) 565, 3247
NspI RCATGY 1 cut(s) 4082
NspV TTCGAA 1 cut(s) 2112
PaeI GCATGC 1 cut(s) 4082
PagI TCATGA 4 cut(s) 114, 1828, 3114, 4825
PaqCI CACCTGC 1 cut(s) 2200
PciSI GCTCTTC 2 cut(s) 3383, 4008
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 565, 2788
PfeI GAWTC 8 cut(s) 1391, 1658, 2312, 2891, 3035, 3290, 3783, 3962
PflFI GACNNNGTC 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 3276
PinAI ACCGGT 1 cut(s) 434
Ple19I CGATCG 1 cut(s) 3091
Ppu21I YACGTR 2 cut(s) 1613, 2789
PpuMI RGGWCCY 1 cut(s) 1084
PshBI ATTAAT 2 cut(s) 2007, 3158
PsiI TTATAA 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 4921
Psp5II RGGWCCY 1 cut(s) 1084
Psp6I CCWGG 6 cut(s) 492, 528, 1690, 1996, 2074, 4525
PspFI CCCAGC 2 cut(s) 3654, 3896
PspGI CCWGG 6 cut(s) 492, 528, 1690, 1996, 2074, 4525
PspN4I GGNNCC 5 cut(s) 33, 238, 1086, 1442, 1995
PspPPI RGGWCCY 1 cut(s) 1084
PsrI GAACNNNNNNTAC 2 cut(s) 3868, 3900
PstNI CAGNNNCTG 1 cut(s) 2807
PsuI RGATCY 3 cut(s) 2851, 3298, 3335
PsyI GACNNNGTC 1 cut(s) 785
PvuI CGATCG 1 cut(s) 3091
PvuII CAGCTG 3 cut(s) 647, 980, 3452
RruI TCGCGA 1 cut(s) 1146
RsaI GTAC 7 cut(s) 200, 1161, 1272, 2299, 2488, 3704, 3886
RsaNI GTAC 7 cut(s) 199, 1160, 1271, 2298, 2487, 3703, 3885
RseI CAYNNNNRTG 5 cut(s) 101, 2235, 2499, 4083, 4329
SacI GAGCTC 1 cut(s) 4921
SapI GCTCTTC 2 cut(s) 3383, 4008
ScaI AGTACT 2 cut(s) 1272, 3886
SduI GDGCHC 4 cut(s) 2748, 3061, 3441, 4921
SexAI ACCWGGT 1 cut(s) 4525
SfcI CTRYAG 1 cut(s) 1776
SfuI TTCGAA 1 cut(s) 2112
SinI GGWCC 6 cut(s) 148, 207, 1084, 2458, 4005, 4204
SmiMI CAYNNNNRTG 5 cut(s) 101, 2235, 2499, 4083, 4329
SmlI CTYRAG 7 cut(s) 248, 341, 790, 2153, 2768, 3947, 4583
SmoI CTYRAG 7 cut(s) 248, 341, 790, 2153, 2768, 3947, 4583
SphI GCATGC 1 cut(s) 4082
SspMI CTAG 8 cut(s) 65, 657, 1566, 2124, 2834, 3311, 3660, 4319
SstI GAGCTC 1 cut(s) 4921
StyI CCWWGG 1 cut(s) 2494
TaiI ACGT 6 cut(s) 1615, 2791, 2884, 2889, 3320, 4299
TaqI TCGA 8 cut(s) 57, 87, 780, 1450, 2112, 3084, 3992, 4284
TatI WGTACW 4 cut(s) 1159, 1270, 3702, 3884
TauI GCSGC 4 cut(s) 45, 48, 845, 3730
TfiI GAWTC 8 cut(s) 1391, 1658, 2312, 2891, 3035, 3290, 3783, 3962
TscAI CASTG 8 cut(s) 963, 1354, 2023, 2689, 2908, 2990, 3552, 4015
TseFI GTSAC 7 cut(s) 1369, 1627, 1922, 2168, 2321, 3425, 3547
Tsp45I GTSAC 7 cut(s) 1369, 1627, 1922, 2168, 2321, 3425, 3547
TspGWI ACGGA 3 cut(s) 2158, 2430, 3444
TspRI CASTG 8 cut(s) 963, 1354, 2023, 2689, 2908, 2990, 3552, 4015
Tth111I GACNNNGTC 1 cut(s) 785
Vha464I CTTAAG 3 cut(s) 341, 3947, 4583
VpaK11BI GGWCC 6 cut(s) 148, 207, 1084, 2458, 4005, 4204
VspI ATTAAT 2 cut(s) 2007, 3158
XbaI TCTAGA 1 cut(s) 2833
XceI RCATGY 1 cut(s) 4082
XcmI CCANNNNNNNNNTGG 1 cut(s) 2501
XmiI GTMKAC 2 cut(s) 1358, 2947
XspI CTAG 8 cut(s) 65, 657, 1566, 2124, 2834, 3311, 3660, 4319
ZrmI AGTACT 2 cut(s) 1272, 3886
Zsp2I ATGCAT 2 cut(s) 565, 3247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.