Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8355801.1

Orthogroup ID

OG0002848

Physical Location & Seq

Genomic Coordinates Forward (+)

134 .. 709

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8355801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgacatcttttttaacatgtttgttgaagactcaactgcggctggaagctttttacacgttcaatgaaagatttgcaaaaatacgtagcaagagaatcaagaaagctgtcaaaggtatcactggagatcaaccctcggaattgatgaatgctgcttcacaagaaggttctaatagtagaaagaagagaagtgtaagtactgatgaagctggggttgacaattcagataaatctttagtcggaacagagaaaaccacacttagaaatcagagcaattctaaggggaaatcaactcgtaagcagtcaagtaaaaggcaggctgctgagggtggacaaaccaatagaaaatcagttgcaaatggaagaggcagaggaagaggaagaggtacaagcagggtactgggaagaggaaagagaaaagtagattccagctctccagaaactcaaaacacttctaatgatggtgaagaagatgatgagttggaagttcatatggcaacatttgaaagctcagaggaagtgcgcagggtaagcttcacaatttgttttgttccatttatatttcagtttctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

191

Amino Acids

21.21

Weight (kDa)

10.09

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28030 AT3G28030 AT3G28030 AT3G28030
fragaria_vesca	FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430
malus_domestica	MD17G1038000.v1.1
prunus_persica	Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1
pyrus_communis	pycom17g03420
rosa_chinensis	RchiOBHm_Chr2g0170851
rosa_laevigata	RLG00000021986
rosa_multiflora	Rmu_co8355801.1_g000001 Rmu_sc0009938.1_g000007 Rmu_sc0032006.1_g000001 Rmu_sc0035429.1_g000001 Rmu_sc0042424.1_g000002
rosa_roxburghii	Rroxscaffold_2G00081030
rosa_rugosa	Rorug02G0551800
rosa_samantha	Rh2AG624500 Rh2BG635100 Rh2CG603900 Rh2DG646700
rosa_wichuraiana	Rw2G051730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	524
AciI	CCGC	1 cut(s)	40
AfaI	GTAC	3 cut(s)	199, 388, 399
AflIII	ACRYGT	2 cut(s)	17, 57
AgsI	TTSAA	3 cut(s)	28, 64, 506
AluBI	AGCT	6 cut(s)	50, 107, 209, 432, 510, 534
AluI	AGCT	6 cut(s)	50, 107, 209, 432, 510, 534
ApeKI	GCWGC	2 cut(s)	152, 320
AspLEI	GCGC	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	476
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BbsI	GAAGAC	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	139, 307
BccI	CCATC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	41, 153, 321
BlsI	GCNGC	3 cut(s)	42, 154, 322
BmcAI	AGTACT	1 cut(s)	199
BmrI	ACTGGG	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	144, 420
Bpu10I	CCTNAGC	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	127, 405
BseDI	CCNNGG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	315, 525
BseNI	ACTGG	2 cut(s)	127, 405
BseXI	GCAGC	2 cut(s)	139, 307
BseYI	CCCAGC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	40
BspCNI	CTCAG	2 cut(s)	316, 524
BsrI	ACTGG	2 cut(s)	127, 405
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	127
Bst6I	CTCTTC	5 cut(s)	179, 358, 370, 376, 400
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	260, 279, 324, 511
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	21
BstSNI	TACGTA	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	139, 307
BstV2I	GAAGAC	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	525
Csp6I	GTAC	3 cut(s)	198, 387, 398
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	8 cut(s)	43, 50, 107, 209, 320, 432, 510, 534
CviKI_1	RGCY	8 cut(s)	43, 50, 107, 209, 320, 432, 510, 534
CviQI	GTAC	3 cut(s)	198, 387, 398
DdeI	CTNAG	4 cut(s)	260, 279, 324, 511
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eam1104I	CTCTTC	5 cut(s)	179, 358, 370, 376, 400
EarI	CTCTTC	5 cut(s)	179, 358, 370, 376, 400
Eco105I	TACGTA	1 cut(s)	86
FaeI	CATG	1 cut(s)	21
FaiI	YATR	4 cut(s)	19, 492, 494, 560
FatI	CATG	1 cut(s)	17
FauNDI	CATATG	1 cut(s)	492
Fnu4HI	GCNGC	3 cut(s)	41, 153, 321
Fsp4HI	GCNGC	3 cut(s)	41, 153, 321
FspI	TGCGCA	1 cut(s)	524
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	3 cut(s)	41, 153, 321
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	144, 420
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	2 cut(s)	48, 532
HinfI	GANTC	3 cut(s)	31, 96, 425
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	217, 332
Hpy188I	TCNGA	5 cut(s)	139, 226, 242, 270, 514
Hpy188III	TCNNGA	2 cut(s)	100, 437
Hpy8I	GTNNAC	2 cut(s)	217, 332
HpyAV	CCTTC	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	59, 85
HpyCH4V	TGCA	2 cut(s)	77, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	531
HpyF3I	CTNAG	4 cut(s)	260, 279, 324, 511
HpySE526I	ACGT	2 cut(s)	59, 85
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	9 cut(s)	29, 108, 195, 302, 379, 386, 442, 450, 511
Lsp1109I	GCAGC	2 cut(s)	139, 307
MaeII	ACGT	2 cut(s)	59, 85
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	8 cut(s)	40, 196, 375, 387, 393, 417, 479, 482
MluCI	AATT	4 cut(s)	140, 220, 274, 540
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	220, 462
MnlI	CCTC	8 cut(s)	145, 319, 359, 365, 371, 377, 401, 508
MseI	TTAA	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	531
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	21
NsbI	TGCGCA	1 cut(s)	524
NspI	RCATGY	1 cut(s)	21
PciI	ACATGT	1 cut(s)	17
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	96, 425
PkrI	GCNGC	3 cut(s)	42, 154, 322
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	86
PscI	ACATGT	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	209
RsaI	GTAC	3 cut(s)	199, 388, 399
RsaNI	GTAC	3 cut(s)	198, 387, 398
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	3 cut(s)	41, 153, 321
Sau3AI	GATC	1 cut(s)	127
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	1 cut(s)	25
SnaBI	TACGTA	1 cut(s)	86
Sse9I	AATT	4 cut(s)	140, 220, 274, 540
SsiI	CCGC	1 cut(s)	40
TaiI	ACGT	2 cut(s)	62, 88
TasI	AATT	4 cut(s)	140, 220, 274, 540
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	96, 425
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	2 cut(s)	152, 320
TspDTI	ATGAA	4 cut(s)	81, 161, 219, 479
TspRI	CASTG	1 cut(s)	127
XceI	RCATGY	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.