Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035429.1

Orthogroup ID

OG0002848

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 778

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035429.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atgggagtccacggtctctgggaactcctctcccccgtcggccgccgcgtctccgtcgagaccttagccggaagaagactcgccatcgacgcgagcatatggatggttcagttcatgaaggcaatgcgcgacgagaagggagagatggtccgcaacgcgcatttgctcggcttctttcgccggatttgcaagctactctacctgcggaccaagccggtgtttgttttcgacggcggaacgccggcgctcaagcgccgcactgtgatcgctcgcaggagacagcgggagaattctcaggctaagctccggaaaaccgccgagaaattgcttctcaatcatcttaagtcggcgaggctgaaagacttggctgaggatattaagaaccagagggagaatcaaaagaatgatgtcaagggtaaggaagtttcggataaagctggtagttcggggagtggtgatttagaaatgaatgatttggccttaaagcgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

163

Amino Acids

18.6

Weight (kDa)

10.56

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28030 AT3G28030 AT3G28030 AT3G28030
fragaria_vesca	FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430
malus_domestica	MD17G1038000.v1.1
prunus_persica	Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1
pyrus_communis	pycom17g03420
rosa_chinensis	RchiOBHm_Chr2g0170851
rosa_laevigata	RLG00000021986
rosa_multiflora	Rmu_co8355801.1_g000001 Rmu_sc0009938.1_g000007 Rmu_sc0032006.1_g000001 Rmu_sc0035429.1_g000001 Rmu_sc0042424.1_g000002
rosa_roxburghii	Rroxscaffold_2G00081030
rosa_rugosa	Rorug02G0551800
rosa_samantha	Rh2AG624500 Rh2BG635100 Rh2CG603900 Rh2DG646700
rosa_wichuraiana	Rw2G051730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccII	CGCG	4 cut(s)	48, 92, 129, 158
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	8 cut(s)	43, 46, 151, 205, 234, 256, 283, 315
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	289
AflII	CTTAAG	1 cut(s)	341
AluBI	AGCT	3 cut(s)	193, 304, 437
AluI	AGCT	3 cut(s)	193, 304, 437
Alw26I	GTCTC	4 cut(s)	20, 53, 55, 271
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	2 cut(s)	40, 477
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	4 cut(s)	129, 160, 247, 255
AspS9I	GGNCC	2 cut(s)	148, 207
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	148, 207
BbsI	GAAGAC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	369
BccI	CCATC	3 cut(s)	92, 97, 139
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BcoDI	GTCTC	4 cut(s)	20, 53, 55, 271
BfoI	RGCGCY	2 cut(s)	248, 256
BfrI	CTTAAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	3 cut(s)	43, 46, 256
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	3 cut(s)	44, 47, 257
Bme18I	GGWCC	2 cut(s)	148, 207
BmgT120I	GGNCC	2 cut(s)	148, 207
BpiI	GAAGAC	1 cut(s)	82
Bpu10I	CCTNAGC	2 cut(s)	64, 369
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	233
BsaI	GGTCTC	2 cut(s)	20, 53
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse118I	RCCGGY	2 cut(s)	214, 241
Bse3DI	GCAATG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	308, 360
BseRI	GAGGAG	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	40
Bsh1236I	CGCG	4 cut(s)	48, 92, 129, 158
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	42, 479
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	5 cut(s)	69, 181, 215, 242, 307
BsmAI	GTCTC	4 cut(s)	20, 53, 55, 271
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	42, 479
Bso31I	GGTCTC	2 cut(s)	20, 53
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	264
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	8 cut(s)	43, 46, 151, 205, 234, 256, 283, 315
BspANI	GGCC	2 cut(s)	42, 479
BspCNI	CTCAG	2 cut(s)	307, 361
BspEI	TCCGGA	1 cut(s)	306
BspFNI	CGCG	4 cut(s)	48, 92, 129, 158
BspHI	TCATGA	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	20, 53
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	214, 241
BssAI	RCCGGY	2 cut(s)	214, 241
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	14, 262
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	94, 191, 243, 271
BstDEI	CTNAG	4 cut(s)	64, 294, 300, 369
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	4 cut(s)	48, 92, 129, 158
BstH2I	RGCGCY	2 cut(s)	248, 256
BstHHI	GCGC	4 cut(s)	129, 160, 247, 255
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	4 cut(s)	20, 53, 55, 271
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 177, 186, 211
BstUI	CGCG	4 cut(s)	48, 92, 129, 158
BstV2I	GAAGAC	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	42, 479
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	94, 191, 243, 271
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	4 cut(s)	129, 160, 247, 255
Cfr10I	RCCGGY	2 cut(s)	214, 241
Cfr13I	GGNCC	2 cut(s)	148, 207
CseI	GACGC	2 cut(s)	37, 98
CviAII	CATG	1 cut(s)	115
DdeI	CTNAG	4 cut(s)	64, 294, 300, 369
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	40
EagI	CGGCCG	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	249
EclXI	CGGCCG	1 cut(s)	40
Eco31I	GGTCTC	2 cut(s)	20, 53
Eco47I	GGWCC	2 cut(s)	148, 207
Eco52I	CGGCCG	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	118
FaiI	YATR	3 cut(s)	98, 100, 116
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	276
FauNDI	CATATG	1 cut(s)	98
Fnu4HI	GCNGC	3 cut(s)	43, 46, 256
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	43, 46, 256
GlaI	GCGC	4 cut(s)	128, 159, 246, 254
GluI	GCNGC	3 cut(s)	43, 46, 256
HaeII	RGCGCY	2 cut(s)	248, 256
HaeIII	GGCC	2 cut(s)	42, 479
HapII	CCGG	5 cut(s)	69, 181, 215, 242, 307
HgaI	GACGC	2 cut(s)	37, 98
HhaI	GCGC	4 cut(s)	129, 160, 247, 255
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	4 cut(s)	127, 158, 245, 253
HinP1I	GCGC	4 cut(s)	127, 158, 245, 253
HinfI	GANTC	3 cut(s)	6, 78, 394
HpaII	CCGG	5 cut(s)	69, 181, 215, 242, 307
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	3 cut(s)	58, 115, 307
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	5 cut(s)	41, 59, 92, 134, 233
HpyAV	CCTTC	2 cut(s)	112, 130
HpyCH4III	ACNGT	2 cut(s)	14, 262
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 177, 186, 211
HpyF3I	CTNAG	4 cut(s)	64, 294, 300, 369
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	4 cut(s)	127, 158, 245, 253
Kpn2I	TCCGGA	1 cut(s)	306
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	309
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	2 cut(s)	84, 87
MluCI	AATT	2 cut(s)	289, 323
MlyI	GAGTC	2 cut(s)	15, 72
MnlI	CCTC	4 cut(s)	38, 345, 364, 381
MreI	CGCCGGCG	1 cut(s)	241
MroI	TCCGGA	1 cut(s)	306
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	3 cut(s)	342, 378, 482
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	283
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	5 cut(s)	69, 181, 215, 242, 307
MvnI	CGCG	4 cut(s)	48, 92, 129, 158
MwoI	GCNNNNNNNGC	4 cut(s)	89, 177, 186, 211
NaeI	GCCGGC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	1 cut(s)	264
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	118
NmeAIII	GCCGAG	2 cut(s)	147, 343
PagI	TCATGA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	3 cut(s)	44, 47, 257
PleI	GAGTC	2 cut(s)	14, 72
PpsI	GAGTC	2 cut(s)	14, 72
PspPI	GGNCC	2 cut(s)	148, 207
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	342, 378, 482
SatI	GCNGC	3 cut(s)	43, 46, 256
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	148, 207
SchI	GAGTC	2 cut(s)	15, 72
SetI	ASST	5 cut(s)	65, 195, 204, 306, 439
SgrAI	CRCCGGYG	1 cut(s)	241
SinI	GGWCC	2 cut(s)	148, 207
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	248, 341
SmoI	CTYRAG	2 cut(s)	248, 341
Sse9I	AATT	2 cut(s)	289, 323
SsiI	CCGC	8 cut(s)	43, 46, 151, 205, 234, 256, 283, 315
TaaI	ACNGT	2 cut(s)	14, 262
TaqI	TCGA	3 cut(s)	57, 87, 228
TasI	AATT	2 cut(s)	289, 323
TauI	GCSGC	3 cut(s)	45, 48, 258
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	3 cut(s)	342, 378, 482
Tru9I	TTAA	3 cut(s)	342, 378, 482
TscAI	CASTG	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	103, 131, 482
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	148, 207
XapI	RAATTY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.